Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0001_J14
(470 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g50010.1 68414.m05612 tubulin alpha-2/alpha-4 chain (TUA2) id... 274 3e-74
At1g04820.1 68414.m00478 tubulin alpha-2/alpha-4 chain (TUA4) ne... 274 3e-74
At4g14960.2 68417.m02299 tubulin alpha-6 chain (TUA6) nearly ide... 272 6e-74
At4g14960.1 68417.m02298 tubulin alpha-6 chain (TUA6) nearly ide... 272 6e-74
At5g19780.1 68418.m02351 tubulin alpha-3/alpha-5 chain (TUA5) ne... 262 6e-71
At5g19770.1 68418.m02350 tubulin alpha-3/alpha-5 chain (TUA3) ne... 262 6e-71
At1g64740.1 68414.m07340 tubulin alpha-1 chain (TUA1) nearly ide... 250 5e-67
At5g12250.1 68418.m01439 tubulin beta-6 chain (TUB6) nearly iden... 146 7e-36
At1g75780.1 68414.m08801 tubulin beta-1 chain (TUB1) nearly iden... 140 3e-34
At5g62700.1 68418.m07868 tubulin beta-2/beta-3 chain (TUB3) near... 139 8e-34
At5g62690.1 68418.m07867 tubulin beta-2/beta-3 chain (TUB2) near... 139 8e-34
At4g20890.1 68417.m03029 tubulin beta-9 chain (TUB9) nearly iden... 139 8e-34
At2g29550.1 68415.m03589 tubulin beta-7 chain (TUB7) identical t... 139 8e-34
At5g23860.1 68418.m02801 tubulin beta-8 chain (TUB8) (TUBB8) ide... 139 1e-33
At1g20010.1 68414.m02506 tubulin beta-5 chain (TUB5) nearly iden... 139 1e-33
At5g44340.1 68418.m05429 tubulin beta-4 chain (TUB4) nearly iden... 133 5e-32
At3g61650.1 68416.m06909 tubulin gamma-1 chain / gamma-1 tubulin... 91 3e-19
At5g05620.1 68418.m00612 tubulin gamma-2 chain / gamma-2 tubulin... 91 3e-19
At1g35420.1 68414.m04394 dienelactone hydrolase family protein l... 30 0.91
At1g75400.1 68414.m08759 expressed protein 28 2.8
At1g25510.1 68414.m03168 aspartyl protease family protein contai... 28 2.8
At5g04660.1 68418.m00474 cytochrome P450, putative cytochrome P4... 27 4.8
At1g18260.1 68414.m02277 suppressor of lin-12-like protein-relat... 27 4.8
At5g65510.1 68418.m08241 ovule development protein, putative sim... 27 6.4
At1g66970.1 68414.m07615 glycerophosphoryl diester phosphodieste... 27 6.4
At3g11960.2 68416.m01476 cleavage and polyadenylation specificit... 27 8.5
At3g11960.1 68416.m01475 cleavage and polyadenylation specificit... 27 8.5
At2g29090.1 68415.m03536 cytochrome P450 family protein similar ... 27 8.5
At1g61140.1 68414.m06888 SNF2 domain-containing protein / helica... 27 8.5
>At1g50010.1 68414.m05612 tubulin alpha-2/alpha-4 chain (TUA2)
identical to tubulin alpha-2/alpha-4 chain SP|P29510
GB:P29510 from [Arabidopsis thaliana]
Length = 450
Score = 274 bits (671), Expect = 3e-74
Identities = 124/155 (80%), Positives = 139/155 (89%)
Frame = +2
Query: 5 EVPTDKTIGGGDDSFNTFFSETGAGKHVPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLIT 184
++P+DKT+GGGDD+FNTFFSETGAGKHVPRAVFVDLEPTV+DEVRTGTYRQLFHPEQLI+
Sbjct: 35 QMPSDKTVGGGDDAFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLIS 94
Query: 185 GKEDAANNYARGHYTIGKEIVDLVLDRIRKLADQCTGLQGFLIFHXXXXXXXXXXXXLLM 364
GKEDAANN+ARGHYTIGKEIVDL LDRIRKLAD CTGLQGFL+F+ LL+
Sbjct: 95 GKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFNAVGGGTGSGLGSLLL 154
Query: 365 ERLSVDYGKKSKLEFAIYPAPQVSTAVVEPYNSIL 469
ERLSVDYGKKSKL F +YP+PQVST+VVEPYNS+L
Sbjct: 155 ERLSVDYGKKSKLGFTVYPSPQVSTSVVEPYNSVL 189
>At1g04820.1 68414.m00478 tubulin alpha-2/alpha-4 chain (TUA4)
nearly identical to SP:P29510 Tubulin alpha-2/alpha-4
chain from [Arabidopsis thaliana]
Length = 450
Score = 274 bits (671), Expect = 3e-74
Identities = 124/155 (80%), Positives = 139/155 (89%)
Frame = +2
Query: 5 EVPTDKTIGGGDDSFNTFFSETGAGKHVPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLIT 184
++P+DKT+GGGDD+FNTFFSETGAGKHVPRAVFVDLEPTV+DEVRTGTYRQLFHPEQLI+
Sbjct: 35 QMPSDKTVGGGDDAFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLIS 94
Query: 185 GKEDAANNYARGHYTIGKEIVDLVLDRIRKLADQCTGLQGFLIFHXXXXXXXXXXXXLLM 364
GKEDAANN+ARGHYTIGKEIVDL LDRIRKLAD CTGLQGFL+F+ LL+
Sbjct: 95 GKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFNAVGGGTGSGLGSLLL 154
Query: 365 ERLSVDYGKKSKLEFAIYPAPQVSTAVVEPYNSIL 469
ERLSVDYGKKSKL F +YP+PQVST+VVEPYNS+L
Sbjct: 155 ERLSVDYGKKSKLGFTVYPSPQVSTSVVEPYNSVL 189
>At4g14960.2 68417.m02299 tubulin alpha-6 chain (TUA6) nearly
identical to SP|P29511 Tubulin alpha-6 chain
{Arabidopsis thaliana}
Length = 450
Score = 272 bits (668), Expect = 6e-74
Identities = 124/155 (80%), Positives = 138/155 (89%)
Frame = +2
Query: 5 EVPTDKTIGGGDDSFNTFFSETGAGKHVPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLIT 184
++P DKT+GGGDD+FNTFFSETGAGKHVPRAVFVDLEPTV+DEVRTGTYRQLFHPEQLI+
Sbjct: 35 QMPGDKTVGGGDDAFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLIS 94
Query: 185 GKEDAANNYARGHYTIGKEIVDLVLDRIRKLADQCTGLQGFLIFHXXXXXXXXXXXXLLM 364
GKEDAANN+ARGHYTIGKEIVDL LDRIRKLAD CTGLQGFL+F+ LL+
Sbjct: 95 GKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFNAVGGGTGSGLGSLLL 154
Query: 365 ERLSVDYGKKSKLEFAIYPAPQVSTAVVEPYNSIL 469
ERLSVDYGKKSKL F +YP+PQVST+VVEPYNS+L
Sbjct: 155 ERLSVDYGKKSKLGFTVYPSPQVSTSVVEPYNSVL 189
>At4g14960.1 68417.m02298 tubulin alpha-6 chain (TUA6) nearly
identical to SP|P29511 Tubulin alpha-6 chain
{Arabidopsis thaliana}
Length = 427
Score = 272 bits (668), Expect = 6e-74
Identities = 124/155 (80%), Positives = 138/155 (89%)
Frame = +2
Query: 5 EVPTDKTIGGGDDSFNTFFSETGAGKHVPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLIT 184
++P DKT+GGGDD+FNTFFSETGAGKHVPRAVFVDLEPTV+DEVRTGTYRQLFHPEQLI+
Sbjct: 35 QMPGDKTVGGGDDAFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLIS 94
Query: 185 GKEDAANNYARGHYTIGKEIVDLVLDRIRKLADQCTGLQGFLIFHXXXXXXXXXXXXLLM 364
GKEDAANN+ARGHYTIGKEIVDL LDRIRKLAD CTGLQGFL+F+ LL+
Sbjct: 95 GKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFNAVGGGTGSGLGSLLL 154
Query: 365 ERLSVDYGKKSKLEFAIYPAPQVSTAVVEPYNSIL 469
ERLSVDYGKKSKL F +YP+PQVST+VVEPYNS+L
Sbjct: 155 ERLSVDYGKKSKLGFTVYPSPQVSTSVVEPYNSVL 189
>At5g19780.1 68418.m02351 tubulin alpha-3/alpha-5 chain (TUA5)
nearly identical to SP|P20363 Tubulin alpha-3/alpha-5
chain {Arabidopsis thaliana}
Length = 450
Score = 262 bits (643), Expect = 6e-71
Identities = 120/154 (77%), Positives = 134/154 (87%)
Frame = +2
Query: 8 VPTDKTIGGGDDSFNTFFSETGAGKHVPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITG 187
+P+D T+G D+FNTFFSETGAGKHVPRAVFVDLEPTV+DEVRTGTYRQLFHPEQLI+G
Sbjct: 36 MPSDTTVGVAHDAFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLISG 95
Query: 188 KEDAANNYARGHYTIGKEIVDLVLDRIRKLADQCTGLQGFLIFHXXXXXXXXXXXXLLME 367
KEDAANN+ARGHYT+GKEIVDL LDR+RKLAD CTGLQGFL+F+ LL+E
Sbjct: 96 KEDAANNFARGHYTVGKEIVDLCLDRVRKLADNCTGLQGFLVFNAVGGGTGSGLGSLLLE 155
Query: 368 RLSVDYGKKSKLEFAIYPAPQVSTAVVEPYNSIL 469
RLSVDYGKKSKL F IYP+PQVSTAVVEPYNS+L
Sbjct: 156 RLSVDYGKKSKLGFTIYPSPQVSTAVVEPYNSVL 189
>At5g19770.1 68418.m02350 tubulin alpha-3/alpha-5 chain (TUA3)
nearly identical to SP|P20363 Tubulin alpha-3/alpha-5
chain {Arabidopsis thaliana}
Length = 450
Score = 262 bits (643), Expect = 6e-71
Identities = 120/154 (77%), Positives = 134/154 (87%)
Frame = +2
Query: 8 VPTDKTIGGGDDSFNTFFSETGAGKHVPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITG 187
+P+D T+G D+FNTFFSETGAGKHVPRAVFVDLEPTV+DEVRTGTYRQLFHPEQLI+G
Sbjct: 36 MPSDTTVGVAHDAFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLISG 95
Query: 188 KEDAANNYARGHYTIGKEIVDLVLDRIRKLADQCTGLQGFLIFHXXXXXXXXXXXXLLME 367
KEDAANN+ARGHYT+GKEIVDL LDR+RKLAD CTGLQGFL+F+ LL+E
Sbjct: 96 KEDAANNFARGHYTVGKEIVDLCLDRVRKLADNCTGLQGFLVFNAVGGGTGSGLGSLLLE 155
Query: 368 RLSVDYGKKSKLEFAIYPAPQVSTAVVEPYNSIL 469
RLSVDYGKKSKL F IYP+PQVSTAVVEPYNS+L
Sbjct: 156 RLSVDYGKKSKLGFTIYPSPQVSTAVVEPYNSVL 189
>At1g64740.1 68414.m07340 tubulin alpha-1 chain (TUA1) nearly
identical to SP|P11139 Tubulin alpha-1 chain
{Arabidopsis thaliana}
Length = 450
Score = 250 bits (611), Expect = 5e-67
Identities = 112/154 (72%), Positives = 132/154 (85%)
Frame = +2
Query: 8 VPTDKTIGGGDDSFNTFFSETGAGKHVPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITG 187
+P+D T+G D+FNTFFSET +G+HVPRAVF+DLEPTV+DEVRTGTYRQLFHPEQLI+G
Sbjct: 36 MPSDSTVGACHDAFNTFFSETSSGQHVPRAVFLDLEPTVIDEVRTGTYRQLFHPEQLISG 95
Query: 188 KEDAANNYARGHYTIGKEIVDLVLDRIRKLADQCTGLQGFLIFHXXXXXXXXXXXXLLME 367
KEDAANN+ARGHYT+G+EIVD L+R+RKLAD CTGLQGFL+F+ LL+E
Sbjct: 96 KEDAANNFARGHYTVGREIVDTCLERLRKLADNCTGLQGFLVFNAVGGGTGSGLGSLLLE 155
Query: 368 RLSVDYGKKSKLEFAIYPAPQVSTAVVEPYNSIL 469
RLSVD+GKKSKL F IYP+PQVSTAVVEPYNS+L
Sbjct: 156 RLSVDFGKKSKLGFTIYPSPQVSTAVVEPYNSVL 189
>At5g12250.1 68418.m01439 tubulin beta-6 chain (TUB6) nearly
identical to SP|P29514 Tubulin beta-6 chain {Arabidopsis
thaliana}
Length = 449
Score = 146 bits (354), Expect = 7e-36
Identities = 64/156 (41%), Positives = 97/156 (62%), Gaps = 3/156 (1%)
Frame = +2
Query: 11 PTDKTIGGGD---DSFNTFFSETGAGKHVPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLI 181
PT + +G D + N +++E G++VPRA+ +DLEP +D VRTG Y Q+F P+ +
Sbjct: 32 PTGRYVGNSDLQLERVNVYYNEASCGRYVPRAILMDLEPGTMDSVRTGPYGQIFRPDNFV 91
Query: 182 TGKEDAANNYARGHYTIGKEIVDLVLDRIRKLADQCTGLQGFLIFHXXXXXXXXXXXXLL 361
G+ A NN+A+GHYT G E++D VLD +RK A+ C LQGF + H LL
Sbjct: 92 FGQSGAGNNWAKGHYTEGAELIDAVLDVVRKEAENCDCLQGFQVCHSLGGGTGSGMGTLL 151
Query: 362 MERLSVDYGKKSKLEFAIYPAPQVSTAVVEPYNSIL 469
+ ++ +Y + L F+++P+P+VS VVEPYN+ L
Sbjct: 152 ISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATL 187
>At1g75780.1 68414.m08801 tubulin beta-1 chain (TUB1) nearly
identical to SP|P12411 Tubulin beta-1 chain {Arabidopsis
thaliana}
Length = 447
Score = 140 bits (340), Expect = 3e-34
Identities = 59/143 (41%), Positives = 91/143 (63%)
Frame = +2
Query: 41 DSFNTFFSETGAGKHVPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARG 220
+ N +++E G++VPRAV +DLEP +D +R+G Y Q+F P+ + G+ A NN+A+G
Sbjct: 46 ERINVYYNEASGGRYVPRAVLMDLEPGTMDSIRSGPYGQIFRPDNFVFGQSGAGNNWAKG 105
Query: 221 HYTIGKEIVDLVLDRIRKLADQCTGLQGFLIFHXXXXXXXXXXXXLLMERLSVDYGKKSK 400
HYT G E++D VLD +RK A+ C LQGF + H LL+ ++ +Y +
Sbjct: 106 HYTEGAELIDAVLDVVRKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMM 165
Query: 401 LEFAIYPAPQVSTAVVEPYNSIL 469
L F+++P+P+VS VVEPYN+ L
Sbjct: 166 LTFSVFPSPKVSDTVVEPYNATL 188
>At5g62700.1 68418.m07868 tubulin beta-2/beta-3 chain (TUB3) nearly
identical to SP|P29512 Tubulin beta-2/beta-3 chain
{Arabidopsis thaliana}
Length = 450
Score = 139 bits (337), Expect = 8e-34
Identities = 63/156 (40%), Positives = 94/156 (60%), Gaps = 3/156 (1%)
Frame = +2
Query: 11 PTDKTIGGGD---DSFNTFFSETGAGKHVPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLI 181
PT + G D + N +++E G+ VPRAV +DLEP +D +R+G Y Q F P+ +
Sbjct: 32 PTGRYTGDSDLQLERINVYYNEASCGRFVPRAVLMDLEPGTMDSLRSGPYGQTFRPDNFV 91
Query: 182 TGKEDAANNYARGHYTIGKEIVDLVLDRIRKLADQCTGLQGFLIFHXXXXXXXXXXXXLL 361
G+ A NN+A+GHYT G E++D VLD +RK A+ C LQGF + H LL
Sbjct: 92 FGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHSLGGGTGSGMGTLL 151
Query: 362 MERLSVDYGKKSKLEFAIYPAPQVSTAVVEPYNSIL 469
+ ++ +Y + L F+++P+P+VS VVEPYN+ L
Sbjct: 152 ISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATL 187
>At5g62690.1 68418.m07867 tubulin beta-2/beta-3 chain (TUB2) nearly
identical to SP|P29512 Tubulin beta-2/beta-3 chain
{Arabidopsis thaliana}
Length = 450
Score = 139 bits (337), Expect = 8e-34
Identities = 63/156 (40%), Positives = 94/156 (60%), Gaps = 3/156 (1%)
Frame = +2
Query: 11 PTDKTIGGGD---DSFNTFFSETGAGKHVPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLI 181
PT + G D + N +++E G+ VPRAV +DLEP +D +R+G Y Q F P+ +
Sbjct: 32 PTGRYTGDSDLQLERINVYYNEASCGRFVPRAVLMDLEPGTMDSLRSGPYGQTFRPDNFV 91
Query: 182 TGKEDAANNYARGHYTIGKEIVDLVLDRIRKLADQCTGLQGFLIFHXXXXXXXXXXXXLL 361
G+ A NN+A+GHYT G E++D VLD +RK A+ C LQGF + H LL
Sbjct: 92 FGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHSLGGGTGSGMGTLL 151
Query: 362 MERLSVDYGKKSKLEFAIYPAPQVSTAVVEPYNSIL 469
+ ++ +Y + L F+++P+P+VS VVEPYN+ L
Sbjct: 152 ISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATL 187
>At4g20890.1 68417.m03029 tubulin beta-9 chain (TUB9) nearly
identical to SP|P29517 Tubulin beta-9 chain {Arabidopsis
thaliana}
Length = 444
Score = 139 bits (337), Expect = 8e-34
Identities = 59/143 (41%), Positives = 91/143 (63%)
Frame = +2
Query: 41 DSFNTFFSETGAGKHVPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARG 220
+ N +F+E GK+VPRAV +DLEP +D +R+G + Q+F P+ + G+ A NN+A+G
Sbjct: 45 ERINVYFNEASGGKYVPRAVLMDLEPGTMDSLRSGPFGQIFRPDNFVFGQSGAGNNWAKG 104
Query: 221 HYTIGKEIVDLVLDRIRKLADQCTGLQGFLIFHXXXXXXXXXXXXLLMERLSVDYGKKSK 400
HYT G E++D VLD +RK A+ C LQGF + H LL+ ++ +Y +
Sbjct: 105 HYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMM 164
Query: 401 LEFAIYPAPQVSTAVVEPYNSIL 469
+ F+++P+P+VS VVEPYN+ L
Sbjct: 165 MTFSVFPSPKVSDTVVEPYNATL 187
>At2g29550.1 68415.m03589 tubulin beta-7 chain (TUB7) identical to
GB:M84704 SP|P29515 Tubulin beta-7 chain {Arabidopsis
thaliana}
Length = 449
Score = 139 bits (337), Expect = 8e-34
Identities = 59/140 (42%), Positives = 90/140 (64%)
Frame = +2
Query: 50 NTFFSETGAGKHVPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYT 229
N +++E G++VPRAV +DLEP +D VR+G Y Q+F P+ + G+ A NN+A+GHYT
Sbjct: 48 NVYYNEASCGRYVPRAVLMDLEPGTMDSVRSGPYGQIFRPDNFVFGQSGAGNNWAKGHYT 107
Query: 230 IGKEIVDLVLDRIRKLADQCTGLQGFLIFHXXXXXXXXXXXXLLMERLSVDYGKKSKLEF 409
G E++D VLD +RK A+ C LQGF + H LL+ ++ +Y + + F
Sbjct: 108 EGAELIDSVLDVVRKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMMTF 167
Query: 410 AIYPAPQVSTAVVEPYNSIL 469
+++P+P+VS VVEPYN+ L
Sbjct: 168 SVFPSPKVSDTVVEPYNATL 187
>At5g23860.1 68418.m02801 tubulin beta-8 chain (TUB8) (TUBB8)
identical to SP|P29516 Tubulin beta-8 chain {Arabidopsis
thaliana}; supporting cDNA gi|15451225|gb|AY054693.1|
Length = 449
Score = 139 bits (336), Expect = 1e-33
Identities = 60/140 (42%), Positives = 89/140 (63%)
Frame = +2
Query: 50 NTFFSETGAGKHVPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYT 229
N +++E G+ VPRAV +DLEP +D VR+G Y Q+F P+ + G+ A NN+A+GHYT
Sbjct: 48 NVYYNEASCGRFVPRAVLMDLEPGTMDSVRSGPYGQIFRPDNFVFGQSGAGNNWAKGHYT 107
Query: 230 IGKEIVDLVLDRIRKLADQCTGLQGFLIFHXXXXXXXXXXXXLLMERLSVDYGKKSKLEF 409
G E++D VLD +RK A+ C LQGF + H LL+ ++ +Y + L F
Sbjct: 108 EGAELIDSVLDVVRKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMLTF 167
Query: 410 AIYPAPQVSTAVVEPYNSIL 469
+++P+P+VS VVEPYN+ L
Sbjct: 168 SVFPSPKVSDTVVEPYNATL 187
>At1g20010.1 68414.m02506 tubulin beta-5 chain (TUB5) nearly
identical to SP|P29513 Tubulin beta-5 chain {Arabidopsis
thaliana}
Length = 449
Score = 139 bits (336), Expect = 1e-33
Identities = 58/143 (40%), Positives = 91/143 (63%)
Frame = +2
Query: 41 DSFNTFFSETGAGKHVPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARG 220
+ N +++E G++VPRAV +DLEP +D +R+G + Q+F P+ + G+ A NN+A+G
Sbjct: 46 ERINVYYNEASGGRYVPRAVLMDLEPGTMDSIRSGPFGQIFRPDNFVFGQSGAGNNWAKG 105
Query: 221 HYTIGKEIVDLVLDRIRKLADQCTGLQGFLIFHXXXXXXXXXXXXLLMERLSVDYGKKSK 400
HYT G E++D VLD +RK A+ C LQGF + H LL+ ++ +Y +
Sbjct: 106 HYTEGAELIDAVLDVVRKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMM 165
Query: 401 LEFAIYPAPQVSTAVVEPYNSIL 469
L F+++P+P+VS VVEPYN+ L
Sbjct: 166 LTFSVFPSPKVSDTVVEPYNATL 188
>At5g44340.1 68418.m05429 tubulin beta-4 chain (TUB4) nearly
identical to SP|P24636 Tubulin beta-4 chain {Arabidopsis
thaliana}
Length = 444
Score = 133 bits (322), Expect = 5e-32
Identities = 57/143 (39%), Positives = 90/143 (62%)
Frame = +2
Query: 41 DSFNTFFSETGAGKHVPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARG 220
+ + +F+E GK+VPRAV +DLEP +D +R+G + Q+F P+ + G+ A NN+A+G
Sbjct: 45 ERIDVYFNEASGGKYVPRAVLMDLEPGTMDSLRSGPFGQIFRPDNFVFGQSGAGNNWAKG 104
Query: 221 HYTIGKEIVDLVLDRIRKLADQCTGLQGFLIFHXXXXXXXXXXXXLLMERLSVDYGKKSK 400
HYT G E++D VLD +RK A+ LQGF + H LL+ ++ +Y +
Sbjct: 105 HYTEGAELIDSVLDVVRKEAENSDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMM 164
Query: 401 LEFAIYPAPQVSTAVVEPYNSIL 469
+ F+++P+P+VS VVEPYN+ L
Sbjct: 165 MTFSVFPSPKVSDTVVEPYNATL 187
>At3g61650.1 68416.m06909 tubulin gamma-1 chain / gamma-1 tubulin
(TUBG1) identical to SP|P38557 Tubulin gamma-1 chain
(Gamma-1 tubulin) {Arabidopsis thaliana}
Length = 474
Score = 91.5 bits (217), Expect = 3e-19
Identities = 47/148 (31%), Positives = 80/148 (54%), Gaps = 3/148 (2%)
Frame = +2
Query: 35 GDDSFNTFFSETGAGKHVPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKE--DAANN 208
G D + FF + ++PRA+ +DLEP V++ ++ G YR L++ E + A NN
Sbjct: 44 GGDRKDVFFYQADDQHYIPRALLIDLEPRVINGIQNGDYRNLYNHENIFVADHGGGAGNN 103
Query: 209 YARGHYTIGKEIVDLVLDRIRKLADQCTGLQGFLIFHXXXXXXXXXXXXLLMERLSVDYG 388
+A G++ GK + + ++D I + AD L+GF++ H L+E L+ Y
Sbjct: 104 WASGYHQ-GKGVEEEIMDMIDREADGSDSLEGFVLCHSIAGGTGSGMGSYLLETLNDRYS 162
Query: 389 KKSKLEFAIYP-APQVSTAVVEPYNSIL 469
KK ++++P + S VV+PYNS+L
Sbjct: 163 KKLVQTYSVFPNQMETSDVVVQPYNSLL 190
>At5g05620.1 68418.m00612 tubulin gamma-2 chain / gamma-2 tubulin
(TUBG2) identical to SP|P38558 Tubulin gamma-2 chain
(Gamma-2 tubulin) {Arabidopsis thaliana}
Length = 474
Score = 91.1 bits (216), Expect = 3e-19
Identities = 47/148 (31%), Positives = 80/148 (54%), Gaps = 3/148 (2%)
Frame = +2
Query: 35 GDDSFNTFFSETGAGKHVPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKE--DAANN 208
G D + FF + ++PRA+ +DLEP V++ ++ G YR L++ E + A NN
Sbjct: 44 GGDRKDVFFYQADDQHYIPRALLIDLEPRVINGIQNGEYRNLYNHENIFLSDHGGGAGNN 103
Query: 209 YARGHYTIGKEIVDLVLDRIRKLADQCTGLQGFLIFHXXXXXXXXXXXXLLMERLSVDYG 388
+A G++ GK + + ++D I + AD L+GF++ H L+E L+ Y
Sbjct: 104 WASGYHQ-GKGVEEEIMDMIDREADGSDSLEGFVLCHSIAGGTGSGMGSYLLETLNDRYS 162
Query: 389 KKSKLEFAIYP-APQVSTAVVEPYNSIL 469
KK ++++P + S VV+PYNS+L
Sbjct: 163 KKLVQTYSVFPNQMETSDVVVQPYNSLL 190
>At1g35420.1 68414.m04394 dienelactone hydrolase family protein low
similarity to dienelactone hydrolase [Rhodococcus
opacus] GI:23094407; contains Pfam profile PF01738:
Dienelactone hydrolase family
Length = 310
Score = 29.9 bits (64), Expect = 0.91
Identities = 22/57 (38%), Positives = 29/57 (50%)
Frame = -2
Query: 349 ETRTGATTERVEDEESLEACALVSEFADAVEDQVYDFLSNGVVTTSIVVCGILLTSD 179
ET GA V+D+E EAC LV+ +V D V +L V + G+LL SD
Sbjct: 63 ETSDGAINVEVDDDEEEEACELVNGTEVSV-DGVEGYLLTAVKNNN--GTGLLLLSD 116
>At1g75400.1 68414.m08759 expressed protein
Length = 455
Score = 28.3 bits (60), Expect = 2.8
Identities = 13/30 (43%), Positives = 19/30 (63%)
Frame = +3
Query: 18 TRPSGVETTPSTRSSARPELASTFPVPSSS 107
T P G TP+++ SA PE+++ VP SS
Sbjct: 83 TPPDGHLGTPASQKSATPEMSTNSMVPPSS 112
>At1g25510.1 68414.m03168 aspartyl protease family protein contains
Pfam domain, PF00026: eukaryotic aspartyl protease
Length = 483
Score = 28.3 bits (60), Expect = 2.8
Identities = 12/47 (25%), Positives = 25/47 (53%), Gaps = 2/47 (4%)
Frame = -2
Query: 181 DKLFWMKQLSVCASADLVNY--SGFKIDEDGTGNVLASSGLAEERVE 47
D +++ + +L+ S F++DE G+G ++ SG A R++
Sbjct: 326 DTFYYLGLTGISVGGELLQIPQSSFEMDESGSGGIIIDSGTAVTRLQ 372
>At5g04660.1 68418.m00474 cytochrome P450, putative cytochrome P450
77A3p, Glycine max., PIR:T05948
Length = 512
Score = 27.5 bits (58), Expect = 4.8
Identities = 15/45 (33%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
Frame = +2
Query: 68 TGAGKHVPRAVFVDLE-PTVVDEVRTGTYRQLFHPEQLITGKEDA 199
T AG +P V V++ P + ++ R + F P++ + GKEDA
Sbjct: 392 TLAGYDIPAGVNVEVYLPGISEDPRIWNNPKKFDPDRFMLGKEDA 436
>At1g18260.1 68414.m02277 suppressor of lin-12-like protein-related
/ sel-1 protein-related similar to Sel-1 homolog
precursor (Suppressor of lin-12-like protein)
(Sel-1L)(SP:Q9UBV2) {Homo sapiens}
Length = 678
Score = 27.5 bits (58), Expect = 4.8
Identities = 12/45 (26%), Positives = 23/45 (51%)
Frame = +2
Query: 38 DDSFNTFFSETGAGKHVPRAVFVDLEPTVVDEVRTGTYRQLFHPE 172
+D N+ + G G+ F + EP +E+ G++R +F P+
Sbjct: 34 NDDLNSGGDDNGVGESSDFDEFGESEPKSEEELDPGSWRSIFEPD 78
>At5g65510.1 68418.m08241 ovule development protein, putative
similar to AINTEGUMENTA (GI:1209099) [Arabidopsis
thaliana]
Length = 437
Score = 27.1 bits (57), Expect = 6.4
Identities = 16/49 (32%), Positives = 23/49 (46%)
Frame = +1
Query: 214 SWSLHHWKGNRRLGPRPHPQTR*PMHRPPGIPHLPLVRWWHRFWFHFSP 360
S S H ++L P P + P P GIP P V ++H+ +F P
Sbjct: 365 SSSSDHNLQQQQLLPSSSPSDQNPNSIPCGIPFEPSVLYYHQNFFQHYP 413
>At1g66970.1 68414.m07615 glycerophosphoryl diester
phosphodiesterase family protein contains Pfam PF03009 :
Glycerophosphoryl diester phosphodiesterase family
Length = 763
Score = 27.1 bits (57), Expect = 6.4
Identities = 19/74 (25%), Positives = 30/74 (40%)
Frame = -2
Query: 418 IDSELQFRLLAVVNGESLHEERSETRTGATTERVEDEESLEACALVSEFADAVEDQVYDF 239
I+ +F V+N +S+ TG T VE + + V F + Q YDF
Sbjct: 578 IEDIKKFANAVVINKDSVFPNSDSFLTGQTNV-VERLQKSQLPVYVELFRNEFVSQAYDF 636
Query: 238 LSNGVVTTSIVVCG 197
S+ V + + G
Sbjct: 637 FSDATVEINAYIYG 650
>At3g11960.2 68416.m01476 cleavage and polyadenylation specificity
factor (CPSF) A subunit C-terminal domain-containing
protein similar to Splicing factor 3B subunit 3
(Spliceosome associatedprotein 130) (SAP 130) (SF3b130)
(Pre-mRNA splicing factor SF3b 130kDa subunit)
(SP:Q15393) [Homo sapiens]; contains Pfam PF03178 : CPSF
A subunit region
Length = 1329
Score = 26.6 bits (56), Expect = 8.5
Identities = 14/29 (48%), Positives = 19/29 (65%), Gaps = 1/29 (3%)
Frame = -2
Query: 154 SVCASADLVNYSGFKIDEDGTGNV-LASS 71
S+C+S D +Y G K+DE T + LASS
Sbjct: 989 SLCSSPDDYSYDGIKLDEAETWQLRLASS 1017
>At3g11960.1 68416.m01475 cleavage and polyadenylation specificity
factor (CPSF) A subunit C-terminal domain-containing
protein similar to Splicing factor 3B subunit 3
(Spliceosome associatedprotein 130) (SAP 130) (SF3b130)
(Pre-mRNA splicing factor SF3b 130kDa subunit)
(SP:Q15393) [Homo sapiens]; contains Pfam PF03178 : CPSF
A subunit region
Length = 1379
Score = 26.6 bits (56), Expect = 8.5
Identities = 14/29 (48%), Positives = 19/29 (65%), Gaps = 1/29 (3%)
Frame = -2
Query: 154 SVCASADLVNYSGFKIDEDGTGNV-LASS 71
S+C+S D +Y G K+DE T + LASS
Sbjct: 1047 SLCSSPDDYSYDGIKLDEAETWQLRLASS 1075
>At2g29090.1 68415.m03536 cytochrome P450 family protein similar to
Cytochrome P450 88A3 (SP:O23051) [Arabidopsis thaliana];
similar to taxane 13-alpha-hydroxylase (GI:17148242)
[Taxus cuspidata].
Length = 482
Score = 26.6 bits (56), Expect = 8.5
Identities = 18/57 (31%), Positives = 24/57 (42%)
Frame = -2
Query: 412 SELQFRLLAVVNGESLHEERSETRTGATTERVEDEESLEACALVSEFADAVEDQVYD 242
S QF + + E+ +TR T RV E A L F +AV+D YD
Sbjct: 321 SREQFSIRQKIKKENRRISWEDTRKMPLTTRVIQETLRAASVLSFTFREAVQDVEYD 377
>At1g61140.1 68414.m06888 SNF2 domain-containing protein / helicase
domain-containing protein / zinc finger protein-related
similar to ATPase [Homo sapiens] GI:531196; contains
Pfam profiles PF00271: Helicase conserved C-terminal
domain, PF00176: SNF2 family N-terminal domain, PF00097:
Zinc finger, C3HC4 type (RING finger)
Length = 1287
Score = 26.6 bits (56), Expect = 8.5
Identities = 11/29 (37%), Positives = 15/29 (51%)
Frame = +2
Query: 377 VDYGKKSKLEFAIYPAPQVSTAVVEPYNS 463
+D+ + F P VS A V+PYNS
Sbjct: 285 IDFSSARGISFKFESNPSVSPACVKPYNS 313
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,133,528
Number of Sequences: 28952
Number of extensions: 245304
Number of successful extensions: 863
Number of sequences better than 10.0: 29
Number of HSP's better than 10.0 without gapping: 833
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 859
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 801831960
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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