Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0001_J13
(402 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC13D6.02c |byr3||zinc finger protein Byr3|Schizosaccharomyces... 85 3e-18
SPAC683.02c ||SPAC694.01c|zf-CCHC type zinc finger protein|Schiz... 47 1e-06
SPBP35G2.08c |air1||zinc knuckle TRAMP complex subunit Air1|Schi... 38 6e-04
SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyc... 37 0.001
SPBC31F10.10c |||zf-MYND type zinc finger protein|Schizosaccharo... 27 0.82
SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces pom... 27 0.82
SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharom... 27 0.82
SPBP8B7.15c |||ubiquitin-protein ligase E3 RBBP6 family |Schizos... 27 1.4
SPAC328.02 |||Ariadne homolog|Schizosaccharomyces pombe|chr 1|||... 26 1.9
SPAC13A11.04c |ubp8||ubiquitin C-terminal hydrolase Ubp8|Schizos... 26 1.9
SPCC18.03 |||shuttle craft like transcriptional regulator|Schizo... 26 2.5
SPAPB17E12.10c |||SAM-dependent methyltransferase|Schizosaccharo... 25 4.4
SPBC1604.14c |shk1|pak1, orb2|PAK-related kinase Shk1|Schizosacc... 25 5.8
>SPAC13D6.02c |byr3||zinc finger protein Byr3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 179
Score = 85.4 bits (202), Expect = 3e-18
Identities = 38/85 (44%), Positives = 45/85 (52%), Gaps = 1/85 (1%)
Frame = +2
Query: 149 CYKCNRTGHFAREC-TQGGVGARDAGFNRQREKCFKCNRTGHFARDCKEEADRCYRCNGT 325
CYKC R GH AR+C T G G +R C+ C GH ARDC +CY C
Sbjct: 85 CYKCGRVGHIARDCRTNGQQSGGRFGGHRSNMNCYACGSYGHQARDCTMGV-KCYSCGKI 143
Query: 326 GHIARECAQSPDEPSCYNCNKTGHI 400
GH + EC Q+ D CY CN+ GHI
Sbjct: 144 GHRSFECQQASDGQLCYKCNQPGHI 168
Score = 76.6 bits (180), Expect = 1e-15
Identities = 35/89 (39%), Positives = 45/89 (50%), Gaps = 5/89 (5%)
Frame = +2
Query: 149 CYKCNRTGHFARECTQGGVGARDAGFNRQREKCFKCNRTGHFARDCKE--EADRCYRCNG 322
CY C GH ARECT+G + C+ CN+TGH A +C E + CY C
Sbjct: 19 CYNCGENGHQARECTKGSI-------------CYNCNQTGHKASECTEPQQEKTCYACGT 65
Query: 323 TGHIARECAQSPDE---PSCYNCNKTGHI 400
GH+ R+C SP+ CY C + GHI
Sbjct: 66 AGHLVRDCPSSPNPRQGAECYKCGRVGHI 94
Score = 70.1 bits (164), Expect = 1e-13
Identities = 42/113 (37%), Positives = 52/113 (46%), Gaps = 28/113 (24%)
Frame = +2
Query: 143 SVCYKCNRTGHFARECTQ----------GGVG--ARDAGFN---RQREKCFKCNRTGHFA 277
S+CY CN+TGH A ECT+ G G RD + RQ +C+KC R GH A
Sbjct: 36 SICYNCNQTGHKASECTEPQQEKTCYACGTAGHLVRDCPSSPNPRQGAECYKCGRVGHIA 95
Query: 278 RDCKEEADR-------------CYRCNGTGHIARECAQSPDEPSCYNCNKTGH 397
RDC+ + CY C GH AR+C CY+C K GH
Sbjct: 96 RDCRTNGQQSGGRFGGHRSNMNCYACGSYGHQARDCTMG---VKCYSCGKIGH 145
Score = 62.9 bits (146), Expect = 2e-11
Identities = 24/57 (42%), Positives = 31/57 (54%)
Frame = +2
Query: 230 RQREKCFKCNRTGHFARDCKEEADRCYRCNGTGHIARECAQSPDEPSCYNCNKTGHI 400
R +C+ C GH AR+C + CY CN TGH A EC + E +CY C GH+
Sbjct: 14 RPGPRCYNCGENGHQARECTK-GSICYNCNQTGHKASECTEPQQEKTCYACGTAGHL 69
Score = 54.8 bits (126), Expect = 5e-09
Identities = 27/72 (37%), Positives = 37/72 (51%), Gaps = 2/72 (2%)
Frame = +2
Query: 137 SSSVCYKCNRTGHFARECTQGGVGARDAGFNRQREKCFKCNRTGHFARDCKEEAD--RCY 310
S+ CY C GH AR+CT G KC+ C + GH + +C++ +D CY
Sbjct: 114 SNMNCYACGSYGHQARDCTMG-------------VKCYSCGKIGHRSFECQQASDGQLCY 160
Query: 311 RCNGTGHIAREC 346
+CN GHIA C
Sbjct: 161 KCNQPGHIAVNC 172
Score = 30.7 bits (66), Expect = 0.088
Identities = 10/16 (62%), Positives = 12/16 (75%)
Frame = +2
Query: 146 VCYKCNRTGHFARECT 193
+CYKCN+ GH A CT
Sbjct: 158 LCYKCNQPGHIAVNCT 173
>SPAC683.02c ||SPAC694.01c|zf-CCHC type zinc finger
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 218
Score = 47.2 bits (107), Expect = 1e-06
Identities = 22/63 (34%), Positives = 33/63 (52%), Gaps = 6/63 (9%)
Frame = +2
Query: 230 RQREK-CFKCNRTGHFARDCKEEADR---CYRCNGTGHIARECA-QSPDE-PSCYNCNKT 391
R R+K CF C + GH +DC E D C+RC H C+ + P + C+ C++
Sbjct: 73 RNRDKFCFACRQQGHIVQDCPEAKDNVSICFRCGSKEHSLNACSKKGPLKFAKCFICHEN 132
Query: 392 GHI 400
GH+
Sbjct: 133 GHL 135
Score = 41.1 bits (92), Expect = 6e-05
Identities = 19/74 (25%), Positives = 35/74 (47%), Gaps = 4/74 (5%)
Frame = +2
Query: 149 CYKCNRTGHFARECTQGGVGARDAGFNRQREKCFKCNRTGHFARDCKEEAD----RCYRC 316
C+ C + GH ++C + A+D CF+C H C ++ +C+ C
Sbjct: 79 CFACRQQGHIVQDCPE----AKD-----NVSICFRCGSKEHSLNACSKKGPLKFAKCFIC 129
Query: 317 NGTGHIARECAQSP 358
+ GH++ +C Q+P
Sbjct: 130 HENGHLSGQCEQNP 143
Score = 37.5 bits (83), Expect = 8e-04
Identities = 20/82 (24%), Positives = 37/82 (45%), Gaps = 7/82 (8%)
Frame = +2
Query: 128 SKMSSSVCYKCNRTGHFARECTQGGVGARDAGFNRQREKCFKCNRTGHFARDCKE----- 292
+K + S+C++C H C++ G + KCF C+ GH + C++
Sbjct: 95 AKDNVSICFRCGSKEHSLNACSKKGP--------LKFAKCFICHENGHLSGQCEQNPKGL 146
Query: 293 --EADRCYRCNGTGHIARECAQ 352
+ C C+ H+A++C Q
Sbjct: 147 YPKGGCCKFCSSVHHLAKDCDQ 168
>SPBP35G2.08c |air1||zinc knuckle TRAMP complex subunit
Air1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 313
Score = 37.9 bits (84), Expect = 6e-04
Identities = 23/79 (29%), Positives = 32/79 (40%), Gaps = 10/79 (12%)
Frame = +2
Query: 140 SSVCYKCNRTGHFARECTQ---GGVGARDAGFNRQ---REKCFKCNRTGHFARDCKEEAD 301
S VC+ C GH +++C GA D + + +KC C GH A C E
Sbjct: 86 SIVCHNCKGNGHISKDCPHVLCTTCGAIDDHISVRCPWTKKCMNCGLLGHIAARCSEPRK 145
Query: 302 R----CYRCNGTGHIAREC 346
R C C+ H + C
Sbjct: 146 RGPRVCRTCHTDTHTSSTC 164
Score = 28.7 bits (61), Expect = 0.36
Identities = 11/30 (36%), Positives = 18/30 (60%)
Frame = +2
Query: 257 NRTGHFARDCKEEADRCYRCNGTGHIAREC 346
+R +F D E+ C+ C G GHI+++C
Sbjct: 74 SRGRYFGSD-PSESIVCHNCKGNGHISKDC 102
>SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 587
Score = 36.7 bits (81), Expect = 0.001
Identities = 16/50 (32%), Positives = 21/50 (42%), Gaps = 5/50 (10%)
Frame = +2
Query: 233 QREKCFKCNRTGHFARDCKEEADR-----CYRCNGTGHIARECAQSPDEP 367
+ + C C GH DC E + C C GHIAR+C +P
Sbjct: 307 ENQVCQNCGNVGHRRFDCPERINHTMNIVCRHCGSIGHIARDCPVRDQQP 356
Score = 26.2 bits (55), Expect = 1.9
Identities = 14/49 (28%), Positives = 18/49 (36%)
Frame = +2
Query: 140 SSVCYKCNRTGHFARECTQGGVGARDAGFNRQREKCFKCNRTGHFARDC 286
+ VC C GH +C + + C C GH ARDC
Sbjct: 308 NQVCQNCGNVGHRRFDCP-------ERINHTMNIVCRHCGSIGHIARDC 349
>SPBC31F10.10c |||zf-MYND type zinc finger
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 574
Score = 27.5 bits (58), Expect = 0.82
Identities = 9/24 (37%), Positives = 17/24 (70%)
Frame = +2
Query: 227 NRQREKCFKCNRTGHFARDCKEEA 298
+RQ KC +C RT + +++C+ +A
Sbjct: 492 SRQFAKCRRCRRTKYCSKECQHQA 515
>SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces
pombe|chr 1||Partial|Manual
Length = 1887
Score = 27.5 bits (58), Expect = 0.82
Identities = 9/16 (56%), Positives = 10/16 (62%)
Frame = +2
Query: 143 SVCYKCNRTGHFAREC 190
S CYKC + H REC
Sbjct: 1804 STCYKCGKADHNLREC 1819
Score = 27.1 bits (57), Expect = 1.1
Identities = 9/26 (34%), Positives = 11/26 (42%)
Frame = +2
Query: 269 HFARDCKEEADRCYRCNGTGHIAREC 346
H + C CY+C H REC
Sbjct: 1794 HTGKACPVRLSTCYKCGKADHNLREC 1819
Score = 25.0 bits (52), Expect = 4.4
Identities = 7/15 (46%), Positives = 10/15 (66%)
Frame = +2
Query: 245 CFKCNRTGHFARDCK 289
C+KC + H R+CK
Sbjct: 1806 CYKCGKADHNLRECK 1820
>SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1919
Score = 27.5 bits (58), Expect = 0.82
Identities = 9/16 (56%), Positives = 10/16 (62%)
Frame = +2
Query: 143 SVCYKCNRTGHFAREC 190
S CYKC + H REC
Sbjct: 1804 STCYKCGKADHNLREC 1819
Score = 27.1 bits (57), Expect = 1.1
Identities = 9/26 (34%), Positives = 11/26 (42%)
Frame = +2
Query: 269 HFARDCKEEADRCYRCNGTGHIAREC 346
H + C CY+C H REC
Sbjct: 1794 HTGKACPVRLSTCYKCGKADHNLREC 1819
Score = 25.0 bits (52), Expect = 4.4
Identities = 7/15 (46%), Positives = 10/15 (66%)
Frame = +2
Query: 245 CFKCNRTGHFARDCK 289
C+KC + H R+CK
Sbjct: 1806 CYKCGKADHNLRECK 1820
>SPBP8B7.15c |||ubiquitin-protein ligase E3 RBBP6 family
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 482
Score = 26.6 bits (56), Expect = 1.4
Identities = 13/46 (28%), Positives = 22/46 (47%), Gaps = 4/46 (8%)
Frame = +2
Query: 245 CFKCNRTGHFARDCKEEADRCY----RCNGTGHIARECAQSPDEPS 370
C++C + GH+ + C AD Y R T I R ++ + P+
Sbjct: 185 CYRCGQKGHWIQACPTNADPNYDGKPRVKRTTGIPRSFLKNVERPA 230
Score = 25.4 bits (53), Expect = 3.3
Identities = 6/15 (40%), Positives = 11/15 (73%)
Frame = +2
Query: 146 VCYKCNRTGHFAREC 190
+CY+C + GH+ + C
Sbjct: 184 ICYRCGQKGHWIQAC 198
>SPAC328.02 |||Ariadne homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 504
Score = 26.2 bits (55), Expect = 1.9
Identities = 9/24 (37%), Positives = 10/24 (41%)
Frame = -2
Query: 386 CCSCSTTARRGSARTHALCAPCHY 315
C CSTT + H C C Y
Sbjct: 291 CPKCSTTIEKNGGCNHMTCKKCKY 314
>SPAC13A11.04c |ubp8||ubiquitin C-terminal hydrolase
Ubp8|Schizosaccharomyces pombe|chr 1|||Manual
Length = 449
Score = 26.2 bits (55), Expect = 1.9
Identities = 10/18 (55%), Positives = 13/18 (72%)
Frame = -2
Query: 164 CCTCSIRLNSFSIRCITC 111
C TC R+N SIRC++C
Sbjct: 38 CSTCK-RINKRSIRCLSC 54
>SPCC18.03 |||shuttle craft like transcriptional
regulator|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1077
Score = 25.8 bits (54), Expect = 2.5
Identities = 9/24 (37%), Positives = 11/24 (45%)
Frame = -2
Query: 326 PCHYICSNGQPPPCSRAQSARCGC 255
PC +C G PPC+ C C
Sbjct: 293 PCPLLCHPGPCPPCTATVEKFCLC 316
>SPAPB17E12.10c |||SAM-dependent
methyltransferase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 301
Score = 25.0 bits (52), Expect = 4.4
Identities = 11/33 (33%), Positives = 14/33 (42%)
Frame = +2
Query: 224 FNRQREKCFKCNRTGHFARDCKEEADRCYRCNG 322
F CFKC + F K+E Y C+G
Sbjct: 257 FAEDLSMCFKCVKKIQFKTKIKDELYAVYFCSG 289
>SPBC1604.14c |shk1|pak1, orb2|PAK-related kinase
Shk1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 658
Score = 24.6 bits (51), Expect = 5.8
Identities = 11/28 (39%), Positives = 18/28 (64%)
Frame = -1
Query: 267 PVRLHLKHFSRCRLKPASRAPTPPCVHS 184
PVR ++ R +LKP+ AP PP +++
Sbjct: 29 PVRYEVEDDLR-KLKPSRTAPKPPAINT 55
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,343,996
Number of Sequences: 5004
Number of extensions: 22845
Number of successful extensions: 111
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 55
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 81
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 136158338
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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