Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0001_J13
(402 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g36020.1 68417.m05128 cold-shock DNA-binding family protein c... 81 2e-16
At2g17870.1 68415.m02070 cold-shock DNA-binding family protein c... 72 2e-13
At1g75560.1 68414.m08781 zinc knuckle (CCHC-type) family protein... 64 4e-11
At3g43590.1 68416.m04638 zinc knuckle (CCHC-type) family protein... 61 3e-10
At3g42860.1 68416.m04491 zinc knuckle (CCHC-type) family protein... 56 7e-09
At2g37340.3 68415.m04580 splicing factor RSZ33 (RSZ33) nearly id... 52 2e-07
At2g37340.2 68415.m04579 splicing factor RSZ33 (RSZ33) nearly id... 52 2e-07
At2g37340.1 68415.m04581 splicing factor RSZ33 (RSZ33) nearly id... 52 2e-07
At3g53500.2 68416.m05907 zinc knuckle (CCHC-type) family protein... 51 3e-07
At3g53500.1 68416.m05906 zinc knuckle (CCHC-type) family protein... 51 3e-07
At2g21060.1 68415.m02500 cold-shock DNA-binding family protein /... 48 2e-06
At5g52380.1 68418.m06499 zinc knuckle (CCHC-type) family protein... 46 1e-05
At4g38680.1 68417.m05477 cold-shock DNA-binding family protein c... 46 1e-05
At5g36240.1 68418.m04372 zinc knuckle (CCHC-type) family protein... 44 3e-05
At2g24590.1 68415.m02936 splicing factor, putative similar to to... 39 0.001
At4g31580.1 68417.m04485 splicing factor RSZp22 (RSZP22) / 9G8-l... 39 0.001
At3g26420.1 68416.m03295 glycine-rich RNA-binding protein simila... 39 0.001
At1g60650.2 68414.m06828 glycine-rich RNA-binding protein, putat... 38 0.003
At1g60650.1 68414.m06827 glycine-rich RNA-binding protein, putat... 38 0.003
At1g54490.1 68414.m06215 5'-3' exoribonuclease (XRN4) identical ... 37 0.004
At5g04280.1 68418.m00421 glycine-rich RNA-binding protein 37 0.006
At1g23860.2 68414.m03010 splicing factor RSZp21 (RSZP21) / 9G8-l... 36 0.008
At1g23860.1 68414.m03009 splicing factor RSZp21 (RSZP21) / 9G8-l... 36 0.008
At5g20220.1 68418.m02407 zinc knuckle (CCHC-type) family protein... 35 0.023
At2g12880.1 68415.m01404 zinc knuckle (CCHC-type) family protein... 34 0.031
At3g02820.1 68416.m00274 zinc knuckle (CCHC-type) family protein... 33 0.071
At3g55340.1 68416.m06146 RNA recognition motif (RRM)-containing ... 32 0.16
At1g75660.1 68414.m08789 5'-3' exoribonuclease (XRN3) identical ... 32 0.16
At5g49930.1 68418.m06182 zinc knuckle (CCHC-type) family protein... 31 0.38
At5g48030.1 68418.m05935 DNAJ heat shock protein, mitochondriall... 30 0.50
At4g17410.1 68417.m02607 expressed protein 30 0.50
At3g31950.1 68416.m04046 hypothetical protein 30 0.66
At1g53720.1 68414.m06113 cyclophilin-RNA interacting protein, pu... 30 0.66
At5g43260.1 68418.m05286 chaperone protein dnaJ-related similar ... 29 0.88
At5g26820.1 68418.m03200 ferroportin-related low similarity to f... 29 1.2
At3g10400.1 68416.m01246 RNA recognition motif (RRM)-containing ... 29 1.2
At5g47430.1 68418.m05844 expressed protein 29 1.5
At5g43630.1 68418.m05333 zinc knuckle (CCHC-type) family protein... 29 1.5
At5g42540.1 68418.m05178 5'-3' exoribonuclease (XRN2) identical ... 29 1.5
At5g05660.1 68418.m00622 zinc finger (NF-X1 type) family protein... 29 1.5
At1g54930.1 68414.m06273 zinc knuckle (CCHC-type) family protein... 29 1.5
At5g38600.1 68418.m04669 proline-rich spliceosome-associated (PS... 28 2.0
At1g10450.1 68414.m01176 paired amphipathic helix repeat-contain... 28 2.0
At1g67210.2 68414.m07647 proline-rich spliceosome-associated (PS... 27 3.5
At1g67210.1 68414.m07646 proline-rich spliceosome-associated (PS... 27 3.5
At1g26260.2 68414.m03204 basic helix-loop-helix (bHLH) family pr... 27 3.5
At1g26260.1 68414.m03203 basic helix-loop-helix (bHLH) family pr... 27 3.5
At5g34870.1 68418.m04106 zinc knuckle (CCHC-type) family protein... 27 4.7
At5g13920.1 68418.m01628 zinc knuckle (CCHC-type) family protein... 27 4.7
At4g30996.1 68417.m04401 expressed protein 27 4.7
At4g06479.1 68417.m00885 hypothetical protein 27 4.7
At3g24070.1 68416.m03023 zinc knuckle (CCHC-type) family protein... 27 4.7
At2g24640.1 68415.m02943 ubiquitin carboxyl-terminal hydrolase f... 27 4.7
At2g15180.1 68415.m01731 zinc knuckle (CCHC-type) family protein... 27 4.7
At5g60740.1 68418.m07621 ABC transporter family protein similar ... 27 6.2
At5g32482.1 68418.m03835 zinc knuckle (CCHC-type) family protein... 27 6.2
At2g30470.1 68415.m03711 transcriptional factor B3 family protei... 27 6.2
At1g31930.2 68414.m03924 extra-large guanine nucleotide binding ... 27 6.2
At1g31930.1 68414.m03923 extra-large guanine nucleotide binding ... 27 6.2
At1g10170.1 68414.m01147 NF-X1 type zinc finger family protein c... 27 6.2
At5g26742.1 68418.m03161 DEAD box RNA helicase (RH3) nearly iden... 26 8.2
At4g10630.1 68417.m01737 glutaredoxin family protein contains Pf... 26 8.2
At1g71010.1 68414.m08192 phosphatidylinositol-4-phosphate 5-kina... 26 8.2
At1g28210.2 68414.m03463 DNAJ heat shock protein, putative stron... 26 8.2
At1g28210.1 68414.m03462 DNAJ heat shock protein, putative stron... 26 8.2
>At4g36020.1 68417.m05128 cold-shock DNA-binding family protein
contains Pfam domains, PF00313: 'Cold-shock' DNA-binding
domain and PF00098: Zinc knuckle
Length = 299
Score = 81.4 bits (192), Expect = 2e-16
Identities = 37/91 (40%), Positives = 47/91 (51%), Gaps = 8/91 (8%)
Frame = +2
Query: 149 CYKCNRTGHFARECTQGGVGARDAGFNRQREKCFKCNRTGHFARDC--KEEADR-CYRCN 319
CY C GHFAR+CTQ C+ C GH ARDC K + R CY+C
Sbjct: 200 CYTCGDVGHFARDCTQKVAAGNVRSGGGGSGTCYSCGGVGHIARDCATKRQPSRGCYQCG 259
Query: 320 GTGHIARECAQ-----SPDEPSCYNCNKTGH 397
G+GH+AR+C Q ++ +CY C K GH
Sbjct: 260 GSGHLARDCDQRGSGGGGNDNACYKCGKEGH 290
Score = 79.4 bits (187), Expect = 8e-16
Identities = 41/107 (38%), Positives = 54/107 (50%), Gaps = 16/107 (14%)
Frame = +2
Query: 128 SKMSSSVCYKCNRTGHFARECTQGGVGARD--AGFNRQREKCFKCNRTGHFARDCKEE-- 295
+K + CY C GH AR+CTQ VG D + C+ C GHFARDC ++
Sbjct: 159 TKGGNDGCYTCGDVGHVARDCTQKSVGNGDQRGAVKGGNDGCYTCGDVGHFARDCTQKVA 218
Query: 296 ----------ADRCYRCNGTGHIARECAQSPDEPS--CYNCNKTGHI 400
+ CY C G GHIAR+CA + +PS CY C +GH+
Sbjct: 219 AGNVRSGGGGSGTCYSCGGVGHIARDCA-TKRQPSRGCYQCGGSGHL 264
Score = 72.1 bits (169), Expect = 1e-13
Identities = 37/108 (34%), Positives = 47/108 (43%), Gaps = 24/108 (22%)
Frame = +2
Query: 149 CYKCNRTGHFARECTQGGVGARDAGFNRQREKCFKCNRTGHFARDCKEEA---------- 298
CY C TGHFAR+CT G G + + C+ C GH ARDC +++
Sbjct: 134 CYNCGDTGHFARDCTSAGNGDQRGATKGGNDGCYTCGDVGHVARDCTQKSVGNGDQRGAV 193
Query: 299 ----DRCYRCNGTGHIARECAQ----------SPDEPSCYNCNKTGHI 400
D CY C GH AR+C Q +CY+C GHI
Sbjct: 194 KGGNDGCYTCGDVGHFARDCTQKVAAGNVRSGGGGSGTCYSCGGVGHI 241
Score = 70.1 bits (164), Expect = 5e-13
Identities = 38/109 (34%), Positives = 45/109 (41%), Gaps = 24/109 (22%)
Frame = +2
Query: 143 SVCYKCNRTGHFARECTQGGVGARDAGFNRQREKCFKCNRTGHFARDC------------ 286
S CY C GH +++C GG G +R E C+ C TGHFARDC
Sbjct: 100 SGCYNCGELGHISKDCGIGGGGGGGERRSRGGEGCYNCGDTGHFARDCTSAGNGDQRGAT 159
Query: 287 KEEADRCYRCNGTGHIARECAQSP------------DEPSCYNCNKTGH 397
K D CY C GH+AR+C Q CY C GH
Sbjct: 160 KGGNDGCYTCGDVGHVARDCTQKSVGNGDQRGAVKGGNDGCYTCGDVGH 208
Score = 52.0 bits (119), Expect = 1e-07
Identities = 24/56 (42%), Positives = 31/56 (55%)
Frame = +2
Query: 131 KMSSSVCYKCNRTGHFARECTQGGVGARDAGFNRQREKCFKCNRTGHFARDCKEEA 298
+ S CY+C +GH AR+C Q G G G N C+KC + GHFAR+C A
Sbjct: 249 RQPSRGCYQCGGSGHLARDCDQRGSG---GGGN--DNACYKCGKEGHFARECSSVA 299
>At2g17870.1 68415.m02070 cold-shock DNA-binding family protein
contains Pfam domains, PF00313: 'Cold-shock' DNA-binding
domain and PF00098: Zinc knuckle
Length = 301
Score = 71.7 bits (168), Expect = 2e-13
Identities = 37/105 (35%), Positives = 44/105 (41%), Gaps = 21/105 (20%)
Frame = +2
Query: 149 CYKCNRTGHFARECTQGGVGARDAGFNRQREKCFKCNRTGHFARDCK------------- 289
CY C GHFAR+C Q G G G C+ C GH A+DC+
Sbjct: 132 CYMCGDVGHFARDCRQSG-GGNSGGGGGGGRPCYSCGEVGHLAKDCRGGSGGNRYGGGGG 190
Query: 290 --EEADRCYRCNGTGHIARECAQS------PDEPSCYNCNKTGHI 400
D CY C G GH AR+C Q+ +CY C GHI
Sbjct: 191 RGSGGDGCYMCGGVGHFARDCRQNGGGNVGGGGSTCYTCGGVGHI 235
Score = 70.9 bits (166), Expect = 3e-13
Identities = 35/101 (34%), Positives = 45/101 (44%), Gaps = 17/101 (16%)
Frame = +2
Query: 149 CYKCNRTGHFARECTQGGVGARDAGFNRQR---EKCFKCNRTGHFARDCKEEA------- 298
CY C GH A++C G G R G + + C+ C GHFARDC++
Sbjct: 163 CYSCGEVGHLAKDCRGGSGGNRYGGGGGRGSGGDGCYMCGGVGHFARDCRQNGGGNVGGG 222
Query: 299 -DRCYRCNGTGHIARECAQSPDEP------SCYNCNKTGHI 400
CY C G GHIA+ C +CY C TGH+
Sbjct: 223 GSTCYTCGGVGHIAKVCTSKIPSGGGGGGRACYECGGTGHL 263
Score = 64.9 bits (151), Expect = 2e-11
Identities = 35/99 (35%), Positives = 43/99 (43%), Gaps = 16/99 (16%)
Frame = +2
Query: 149 CYKCNRTGHFARECTQGGVGARDAGFNRQREKCFKCNRTGHFARDCKEE--------ADR 304
CY C GHFAR+C Q G G G C+ C GH A+ C +
Sbjct: 198 CYMCGGVGHFARDCRQNGGGNVGGG----GSTCYTCGGVGHIAKVCTSKIPSGGGGGGRA 253
Query: 305 CYRCNGTGHIARECAQSPDEPS--------CYNCNKTGH 397
CY C GTGH+AR+C + S C+ C K GH
Sbjct: 254 CYECGGTGHLARDCDRRGSGSSGGGGGSNKCFICGKEGH 292
Score = 60.1 bits (139), Expect = 5e-10
Identities = 31/95 (32%), Positives = 43/95 (45%), Gaps = 15/95 (15%)
Frame = +2
Query: 107 LNKLYI*SKMSSSVCYKCNRTGHFARECTQGGVGARDAGFNRQRE----KCFKCNRTGHF 274
LNK S+ S C+ C GH A++C G G G +R +C+ C GHF
Sbjct: 82 LNKKENSSRGSGGNCFNCGEVGHMAKDCDGGSGGKSFGGGGGRRSGGEGECYMCGDVGHF 141
Query: 275 ARDCKEEAD-----------RCYRCNGTGHIAREC 346
ARDC++ CY C GH+A++C
Sbjct: 142 ARDCRQSGGGNSGGGGGGGRPCYSCGEVGHLAKDC 176
Score = 55.2 bits (127), Expect = 2e-08
Identities = 23/50 (46%), Positives = 29/50 (58%)
Frame = +2
Query: 149 CYKCNRTGHFARECTQGGVGARDAGFNRQREKCFKCNRTGHFARDCKEEA 298
CY+C TGH AR+C + G G+ G KCF C + GHFAR+C A
Sbjct: 254 CYECGGTGHLARDCDRRGSGSSGGGGG--SNKCFICGKEGHFARECTSVA 301
Score = 54.4 bits (125), Expect = 3e-08
Identities = 28/78 (35%), Positives = 37/78 (47%), Gaps = 10/78 (12%)
Frame = +2
Query: 143 SVCYKCNRTGHFARECTQGGVGARDAGFNRQREKCFKCNRTGHFARDCKEE--------- 295
S CY C GH A+ CT + + G R C++C TGH ARDC
Sbjct: 224 STCYTCGGVGHIAKVCTSK-IPSGGGGGGRA---CYECGGTGHLARDCDRRGSGSSGGGG 279
Query: 296 -ADRCYRCNGTGHIAREC 346
+++C+ C GH AREC
Sbjct: 280 GSNKCFICGKEGHFAREC 297
Score = 33.9 bits (74), Expect = 0.041
Identities = 24/76 (31%), Positives = 29/76 (38%), Gaps = 3/76 (3%)
Frame = +2
Query: 179 ARECTQGGVGARDAGFNRQREK---CFKCNRTGHFARDCKEEADRCYRCNGTGHIARECA 349
A E T G G+ + N R CF C GH A+DC + G G
Sbjct: 71 AIEVTAPGGGSLNKKENSSRGSGGNCFNCGEVGHMAKDCDGGSGGKSFGGGGGR------ 124
Query: 350 QSPDEPSCYNCNKTGH 397
+S E CY C GH
Sbjct: 125 RSGGEGECYMCGDVGH 140
Score = 32.3 bits (70), Expect = 0.12
Identities = 11/18 (61%), Positives = 14/18 (77%)
Frame = +2
Query: 140 SSVCYKCNRTGHFARECT 193
S+ C+ C + GHFARECT
Sbjct: 281 SNKCFICGKEGHFARECT 298
>At1g75560.1 68414.m08781 zinc knuckle (CCHC-type) family protein
contains Pfam domain, PF00098: Zinc knuckle
Length = 257
Score = 63.7 bits (148), Expect = 4e-11
Identities = 33/96 (34%), Positives = 46/96 (47%), Gaps = 10/96 (10%)
Frame = +2
Query: 143 SVCYKCNRTGHFARECT------QGGVGARDAGFNRQREKCFKCNRTGHFARDCKEEADR 304
++C C R GHFAR+C+ G+ A +C+ C GH A +C E
Sbjct: 55 NLCNNCKRPGHFARDCSNVSVCNNCGLPGHIAAECTAESRCWNCREPGHVASNCSNEG-I 113
Query: 305 CYRCNGTGHIARECAQSP----DEPSCYNCNKTGHI 400
C+ C +GH AR+C+ S D C NC K GH+
Sbjct: 114 CHSCGKSGHRARDCSNSDSRAGDLRLCNNCFKQGHL 149
Score = 62.5 bits (145), Expect = 1e-10
Identities = 29/88 (32%), Positives = 45/88 (51%)
Frame = +2
Query: 137 SSSVCYKCNRTGHFARECTQGGVGARDAGFNRQREKCFKCNRTGHFARDCKEEADRCYRC 316
+ +C+ C ++GH AR+C+ A D C C + GH A DC + C C
Sbjct: 110 NEGICHSCGKSGHRARDCSNSDSRAGDL------RLCNNCFKQGHLAADCTND-KACKNC 162
Query: 317 NGTGHIARECAQSPDEPSCYNCNKTGHI 400
+GHIAR+C ++P C C+ +GH+
Sbjct: 163 RTSGHIARDCR---NDPVCNICSISGHV 187
Score = 58.0 bits (134), Expect = 2e-09
Identities = 35/98 (35%), Positives = 44/98 (44%), Gaps = 12/98 (12%)
Frame = +2
Query: 143 SVCYKCNRTGHFARECTQGGV--GARDAGF---NRQREK-CFKCNRTGHFARDCKEEADR 304
SVC C GH A ECT R+ G N E C C ++GH ARDC R
Sbjct: 74 SVCNNCGLPGHIAAECTAESRCWNCREPGHVASNCSNEGICHSCGKSGHRARDCSNSDSR 133
Query: 305 ------CYRCNGTGHIARECAQSPDEPSCYNCNKTGHI 400
C C GH+A +C ++ +C NC +GHI
Sbjct: 134 AGDLRLCNNCFKQGHLAADCT---NDKACKNCRTSGHI 168
Score = 54.8 bits (126), Expect = 2e-08
Identities = 25/56 (44%), Positives = 28/56 (50%)
Frame = +2
Query: 233 QREKCFKCNRTGHFARDCKEEADRCYRCNGTGHIARECAQSPDEPSCYNCNKTGHI 400
Q C C R GHFARDC C C GHIA EC E C+NC + GH+
Sbjct: 53 QGNLCNNCKRPGHFARDC-SNVSVCNNCGLPGHIAAECTA---ESRCWNCREPGHV 104
Score = 40.7 bits (91), Expect = 4e-04
Identities = 23/69 (33%), Positives = 33/69 (47%), Gaps = 2/69 (2%)
Frame = +2
Query: 146 VCYKCNRTGHFARECTQGGVGARDAGFNRQREKCFKCNRTGHFARDCKEEADR--CYRCN 319
VC C+ +GH AR C +G D G +R R+ + +RD + + C+ C
Sbjct: 177 VCNICSISGHVARHCPKGDSNYSDRG-SRVRDGGMQRGGLSRMSRDREGVSAMIICHNCG 235
Query: 320 GTGHIAREC 346
G GH A EC
Sbjct: 236 GRGHRAYEC 244
Score = 27.1 bits (57), Expect = 4.7
Identities = 12/29 (41%), Positives = 14/29 (48%)
Frame = +2
Query: 146 VCYKCNRTGHFARECTQGGVGARDAGFNR 232
+C+ C GH A EC V D GF R
Sbjct: 230 ICHNCGGRGHRAYECPSARVA--DRGFRR 256
>At3g43590.1 68416.m04638 zinc knuckle (CCHC-type) family protein
contains Pfam domain, PF00098: Zinc knuckle
Length = 551
Score = 60.9 bits (141), Expect = 3e-10
Identities = 31/88 (35%), Positives = 42/88 (47%), Gaps = 19/88 (21%)
Frame = +2
Query: 149 CYKCNRTGHFAREC-------TQGGVGARDAGFN-RQREKCFKCNRTGHFARDC------ 286
CY+C + GH C + + FN R+ +C++C GHFAR+C
Sbjct: 287 CYRCGQLGHSGLACGRHYEESNENDSATPERLFNSREASECYRCGEEGHFARECPNSSSI 346
Query: 287 -----KEEADRCYRCNGTGHIARECAQS 355
+E CYRCNG+GH AREC S
Sbjct: 347 STSHGRESQTLCYRCNGSGHFARECPNS 374
Score = 54.4 bits (125), Expect = 3e-08
Identities = 25/77 (32%), Positives = 37/77 (48%)
Frame = +2
Query: 140 SSVCYKCNRTGHFARECTQGGVGARDAGFNRQREKCFKCNRTGHFARDCKEEADRCYRCN 319
+S CY+C GHFAREC + G + C++CN +GHFAR+C + R
Sbjct: 324 ASECYRCGEEGHFARECPNSSSISTSHG-RESQTLCYRCNGSGHFARECPNSSQVSKRDR 382
Query: 320 GTGHIARECAQSPDEPS 370
T + + + E S
Sbjct: 383 ETSTTSHKSRKKNKENS 399
Score = 48.4 bits (110), Expect = 2e-06
Identities = 27/87 (31%), Positives = 35/87 (40%), Gaps = 4/87 (4%)
Frame = +2
Query: 149 CYKCNRTGHFARECTQGGVGARDAGFNRQREKCFKCNRTGHFARDCKEEADRCYRCNGTG 328
CY C GH + C ++R+ CF C H A+ C + D CY C TG
Sbjct: 168 CYSCGEQGHTSFNCPTP---------TKRRKPCFICGSLEHGAKQCSKGHD-CYICKKTG 217
Query: 329 HIARECAQSPDEPS----CYNCNKTGH 397
H A++C S C C GH
Sbjct: 218 HRAKDCPDKYKNGSKGAVCLRCGDFGH 244
Score = 42.3 bits (95), Expect = 1e-04
Identities = 28/95 (29%), Positives = 35/95 (36%), Gaps = 12/95 (12%)
Frame = +2
Query: 149 CYKCNRTGHFARECTQGGVGARDAGFNRQREKCFKCNRTGHFARDCKEEADR-------C 307
CY C +TGH A++C C +C GH CK E + C
Sbjct: 210 CYICKKTGHRAKDCPDKYKNGSKGAV------CLRCGDFGHDMILCKYEYSKEDLKDVQC 263
Query: 308 YRCNGTGHIARECAQSPDEP-----SCYNCNKTGH 397
Y C GH+ C P SCY C + GH
Sbjct: 264 YICKSFGHL---CCVEPGNSLSWAVSCYRCGQLGH 295
Score = 39.9 bits (89), Expect = 6e-04
Identities = 25/95 (26%), Positives = 38/95 (40%), Gaps = 11/95 (11%)
Frame = +2
Query: 149 CYKCNRTGHFARECTQGGVGARDAGFNRQREKCFKCNRTGHFARDCKEEADR------CY 310
C+ C H A++C++G C+ C +TGH A+DC ++ C
Sbjct: 191 CFICGSLEHGAKQCSKG-------------HDCYICKKTGHRAKDCPDKYKNGSKGAVCL 237
Query: 311 RCNGTGHIAREC-----AQSPDEPSCYNCNKTGHI 400
RC GH C + + CY C GH+
Sbjct: 238 RCGDFGHDMILCKYEYSKEDLKDVQCYICKSFGHL 272
Score = 39.1 bits (87), Expect = 0.001
Identities = 18/43 (41%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
Frame = +2
Query: 137 SSSVCYKCNRTGHFARECTQGG-VGARDAGFNRQREKCFKCNR 262
S ++CY+CN +GHFAREC V RD + K K N+
Sbjct: 354 SQTLCYRCNGSGHFARECPNSSQVSKRDRETSTTSHKSRKKNK 396
Score = 29.5 bits (63), Expect = 0.88
Identities = 19/83 (22%), Positives = 27/83 (32%)
Frame = +2
Query: 149 CYKCNRTGHFARECTQGGVGARDAGFNRQREKCFKCNRTGHFARDCKEEADRCYRCNGTG 328
CY C GH C + G A C++C + GH C + +
Sbjct: 263 CYICKSFGHLC--CVEPGNSLSWA------VSCYRCGQLGHSGLACGRHYEESNENDSA- 313
Query: 329 HIARECAQSPDEPSCYNCNKTGH 397
S + CY C + GH
Sbjct: 314 -TPERLFNSREASECYRCGEEGH 335
>At3g42860.1 68416.m04491 zinc knuckle (CCHC-type) family protein
contains Pfam domain, PF00098: Zinc knuckle
Length = 372
Score = 56.4 bits (130), Expect = 7e-09
Identities = 29/94 (30%), Positives = 49/94 (52%), Gaps = 4/94 (4%)
Frame = +2
Query: 128 SKMSSSVCYKCNRTGHFARECT-QGGVGARDAGFNRQRE---KCFKCNRTGHFARDCKEE 295
S ++ C+KC + GH++R+CT Q G + G + +C+KC + GH++RDC +
Sbjct: 263 STSAAGDCFKCGKPGHWSRDCTAQSGNPKYEPGQMKSSSSSGECYKCGKQGHWSRDCTGQ 322
Query: 296 ADRCYRCNGTGHIARECAQSPDEPSCYNCNKTGH 397
+ +G A+ + + D CY C K GH
Sbjct: 323 SSNQQFQSGQ---AKSTSSTGD---CYKCGKAGH 350
Score = 50.8 bits (116), Expect = 3e-07
Identities = 23/61 (37%), Positives = 33/61 (54%), Gaps = 4/61 (6%)
Frame = +2
Query: 128 SKMSSSVCYKCNRTGHFARECT-QGGVGARDAGFNRQREK---CFKCNRTGHFARDCKEE 295
S SS CYKC + GH++R+CT Q +G + C+KC + GH++RDC
Sbjct: 299 SSSSSGECYKCGKQGHWSRDCTGQSSNQQFQSGQAKSTSSTGDCYKCGKAGHWSRDCTSP 358
Query: 296 A 298
A
Sbjct: 359 A 359
Score = 46.8 bits (106), Expect = 5e-06
Identities = 34/113 (30%), Positives = 49/113 (43%), Gaps = 25/113 (22%)
Frame = +2
Query: 134 MSSSVCYKCNRTGHFARECTQGGVGARDAGFNRQREKCFKCNRTGHFARDCKEEADR--- 304
+SS Y + +F T+G A+ C+KC + GH+ARDC ++D
Sbjct: 208 VSSPTSYSVTKNSNFGDSDTRGYQNAKTG------TPCYKCGKEGHWARDCTVQSDTGPV 261
Query: 305 --------CYRCNGTGHIAREC-AQSPD---EP----------SCYNCNKTGH 397
C++C GH +R+C AQS + EP CY C K GH
Sbjct: 262 KSTSAAGDCFKCGKPGHWSRDCTAQSGNPKYEPGQMKSSSSSGECYKCGKQGH 314
>At2g37340.3 68415.m04580 splicing factor RSZ33 (RSZ33) nearly
identical to splicing factor RSZ33 [Arabidopsis
thaliana] GI:9843663; contains Pfam profiles PF00076:
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain),
PF00098: Zinc knuckle
Length = 249
Score = 51.6 bits (118), Expect = 2e-07
Identities = 25/66 (37%), Positives = 32/66 (48%), Gaps = 2/66 (3%)
Frame = +2
Query: 167 TGHFARECTQGGVGARDAGFNRQREKCFKCNRTGHFARDCK--EEADRCYRCNGTGHIAR 340
T F+R +G G +CF C GH+ARDC + ++CYRC GHI R
Sbjct: 34 TVEFSRGAPRGSRDFDSRGPPPGAGRCFNCGVDGHWARDCTAGDWKNKCYRCGERGHIER 93
Query: 341 ECAQSP 358
C SP
Sbjct: 94 NCKNSP 99
Score = 41.9 bits (94), Expect = 2e-04
Identities = 18/55 (32%), Positives = 26/55 (47%)
Frame = +2
Query: 149 CYKCNRTGHFARECTQGGVGARDAGFNRQREKCFKCNRTGHFARDCKEEADRCYR 313
C+ C GH+AR+CT G + KC++C GH R+CK + R
Sbjct: 60 CFNCGVDGHWARDCTAGD----------WKNKCYRCGERGHIERNCKNSPKKLRR 104
Score = 41.1 bits (92), Expect = 3e-04
Identities = 15/35 (42%), Positives = 19/35 (54%)
Frame = +2
Query: 296 ADRCYRCNGTGHIARECAQSPDEPSCYNCNKTGHI 400
A RC+ C GH AR+C + CY C + GHI
Sbjct: 57 AGRCFNCGVDGHWARDCTAGDWKNKCYRCGERGHI 91
Score = 26.2 bits (55), Expect = 8.2
Identities = 9/25 (36%), Positives = 11/25 (44%)
Frame = +2
Query: 149 CYKCNRTGHFARECTQGGVGARDAG 223
CY+C GH R C R +G
Sbjct: 82 CYRCGERGHIERNCKNSPKKLRRSG 106
>At2g37340.2 68415.m04579 splicing factor RSZ33 (RSZ33) nearly
identical to splicing factor RSZ33 [Arabidopsis
thaliana] GI:9843663; contains Pfam profiles PF00076:
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain),
PF00098: Zinc knuckle
Length = 260
Score = 51.6 bits (118), Expect = 2e-07
Identities = 25/66 (37%), Positives = 32/66 (48%), Gaps = 2/66 (3%)
Frame = +2
Query: 167 TGHFARECTQGGVGARDAGFNRQREKCFKCNRTGHFARDCK--EEADRCYRCNGTGHIAR 340
T F+R +G G +CF C GH+ARDC + ++CYRC GHI R
Sbjct: 45 TVEFSRGAPRGSRDFDSRGPPPGAGRCFNCGVDGHWARDCTAGDWKNKCYRCGERGHIER 104
Query: 341 ECAQSP 358
C SP
Sbjct: 105 NCKNSP 110
Score = 41.9 bits (94), Expect = 2e-04
Identities = 18/55 (32%), Positives = 26/55 (47%)
Frame = +2
Query: 149 CYKCNRTGHFARECTQGGVGARDAGFNRQREKCFKCNRTGHFARDCKEEADRCYR 313
C+ C GH+AR+CT G + KC++C GH R+CK + R
Sbjct: 71 CFNCGVDGHWARDCTAGD----------WKNKCYRCGERGHIERNCKNSPKKLRR 115
Score = 41.1 bits (92), Expect = 3e-04
Identities = 15/35 (42%), Positives = 19/35 (54%)
Frame = +2
Query: 296 ADRCYRCNGTGHIARECAQSPDEPSCYNCNKTGHI 400
A RC+ C GH AR+C + CY C + GHI
Sbjct: 68 AGRCFNCGVDGHWARDCTAGDWKNKCYRCGERGHI 102
Score = 26.2 bits (55), Expect = 8.2
Identities = 9/25 (36%), Positives = 11/25 (44%)
Frame = +2
Query: 149 CYKCNRTGHFARECTQGGVGARDAG 223
CY+C GH R C R +G
Sbjct: 93 CYRCGERGHIERNCKNSPKKLRRSG 117
>At2g37340.1 68415.m04581 splicing factor RSZ33 (RSZ33) nearly
identical to splicing factor RSZ33 [Arabidopsis
thaliana] GI:9843663; contains Pfam profiles PF00076:
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain),
PF00098: Zinc knuckle
Length = 290
Score = 51.6 bits (118), Expect = 2e-07
Identities = 25/66 (37%), Positives = 32/66 (48%), Gaps = 2/66 (3%)
Frame = +2
Query: 167 TGHFARECTQGGVGARDAGFNRQREKCFKCNRTGHFARDCK--EEADRCYRCNGTGHIAR 340
T F+R +G G +CF C GH+ARDC + ++CYRC GHI R
Sbjct: 75 TVEFSRGAPRGSRDFDSRGPPPGAGRCFNCGVDGHWARDCTAGDWKNKCYRCGERGHIER 134
Query: 341 ECAQSP 358
C SP
Sbjct: 135 NCKNSP 140
Score = 41.9 bits (94), Expect = 2e-04
Identities = 18/55 (32%), Positives = 26/55 (47%)
Frame = +2
Query: 149 CYKCNRTGHFARECTQGGVGARDAGFNRQREKCFKCNRTGHFARDCKEEADRCYR 313
C+ C GH+AR+CT G + KC++C GH R+CK + R
Sbjct: 101 CFNCGVDGHWARDCTAGD----------WKNKCYRCGERGHIERNCKNSPKKLRR 145
Score = 41.1 bits (92), Expect = 3e-04
Identities = 15/35 (42%), Positives = 19/35 (54%)
Frame = +2
Query: 296 ADRCYRCNGTGHIARECAQSPDEPSCYNCNKTGHI 400
A RC+ C GH AR+C + CY C + GHI
Sbjct: 98 AGRCFNCGVDGHWARDCTAGDWKNKCYRCGERGHI 132
Score = 26.2 bits (55), Expect = 8.2
Identities = 9/25 (36%), Positives = 11/25 (44%)
Frame = +2
Query: 149 CYKCNRTGHFARECTQGGVGARDAG 223
CY+C GH R C R +G
Sbjct: 123 CYRCGERGHIERNCKNSPKKLRRSG 147
>At3g53500.2 68416.m05907 zinc knuckle (CCHC-type) family protein
contains Pfam domain PF00098: Zinc knuckle
Length = 284
Score = 50.8 bits (116), Expect = 3e-07
Identities = 20/41 (48%), Positives = 25/41 (60%), Gaps = 2/41 (4%)
Frame = +2
Query: 242 KCFKCNRTGHFARDCK--EEADRCYRCNGTGHIARECAQSP 358
+CF C GH+ARDC + ++CYRC GHI R C SP
Sbjct: 100 RCFNCGVDGHWARDCTAGDWKNKCYRCGERGHIERNCKNSP 140
Score = 41.5 bits (93), Expect = 2e-04
Identities = 18/50 (36%), Positives = 25/50 (50%)
Frame = +2
Query: 140 SSVCYKCNRTGHFARECTQGGVGARDAGFNRQREKCFKCNRTGHFARDCK 289
S C+ C GH+AR+CT G + KC++C GH R+CK
Sbjct: 98 SGRCFNCGVDGHWARDCTAGD----------WKNKCYRCGERGHIERNCK 137
Score = 39.9 bits (89), Expect = 6e-04
Identities = 14/33 (42%), Positives = 18/33 (54%)
Frame = +2
Query: 302 RCYRCNGTGHIARECAQSPDEPSCYNCNKTGHI 400
RC+ C GH AR+C + CY C + GHI
Sbjct: 100 RCFNCGVDGHWARDCTAGDWKNKCYRCGERGHI 132
>At3g53500.1 68416.m05906 zinc knuckle (CCHC-type) family protein
contains Pfam domain PF00098: Zinc knuckle
Length = 243
Score = 50.8 bits (116), Expect = 3e-07
Identities = 20/41 (48%), Positives = 25/41 (60%), Gaps = 2/41 (4%)
Frame = +2
Query: 242 KCFKCNRTGHFARDCK--EEADRCYRCNGTGHIARECAQSP 358
+CF C GH+ARDC + ++CYRC GHI R C SP
Sbjct: 59 RCFNCGVDGHWARDCTAGDWKNKCYRCGERGHIERNCKNSP 99
Score = 41.5 bits (93), Expect = 2e-04
Identities = 18/50 (36%), Positives = 25/50 (50%)
Frame = +2
Query: 140 SSVCYKCNRTGHFARECTQGGVGARDAGFNRQREKCFKCNRTGHFARDCK 289
S C+ C GH+AR+CT G + KC++C GH R+CK
Sbjct: 57 SGRCFNCGVDGHWARDCTAGD----------WKNKCYRCGERGHIERNCK 96
Score = 39.9 bits (89), Expect = 6e-04
Identities = 14/33 (42%), Positives = 18/33 (54%)
Frame = +2
Query: 302 RCYRCNGTGHIARECAQSPDEPSCYNCNKTGHI 400
RC+ C GH AR+C + CY C + GHI
Sbjct: 59 RCFNCGVDGHWARDCTAGDWKNKCYRCGERGHI 91
>At2g21060.1 68415.m02500 cold-shock DNA-binding family protein /
glycine-rich protein (GRP2) identical to Glycine-rich
protein 2b (AtGRP2b) [Arabidopsis thaliana]
SWISS-PROT:Q38896; contains Pfam domains PF00313:
'Cold-shock' DNA-binding domain and PF00098: Zinc
knuckle
Length = 201
Score = 48.4 bits (110), Expect = 2e-06
Identities = 23/58 (39%), Positives = 28/58 (48%), Gaps = 12/58 (20%)
Frame = +2
Query: 149 CYKCNRTGHFARECTQGGVGARDAGFNRQREK------------CFKCNRTGHFARDC 286
C+KC GH AREC+QGG G G + C+ C +GHFARDC
Sbjct: 138 CFKCGEPGHMARECSQGGGGYSGGGGGGRYGSGGGGGGGGGGLSCYSCGESGHFARDC 195
Score = 38.7 bits (86), Expect = 0.001
Identities = 21/69 (30%), Positives = 27/69 (39%), Gaps = 2/69 (2%)
Frame = +2
Query: 197 GGVGARDAGFNRQREKCFKCNRTGHFARDCKEEADRCYRCNGTGHIARECAQSPDEP--S 370
GG G+ G CFKC GH AR+C + G G S
Sbjct: 122 GGRGSGGRGGGGGDNSCFKCGEPGHMARECSQGGGGYSGGGGGGRYGSGGGGGGGGGGLS 181
Query: 371 CYNCNKTGH 397
CY+C ++GH
Sbjct: 182 CYSCGESGH 190
Score = 37.5 bits (83), Expect = 0.003
Identities = 12/18 (66%), Positives = 14/18 (77%)
Frame = +2
Query: 149 CYKCNRTGHFARECTQGG 202
CY C +GHFAR+CT GG
Sbjct: 182 CYSCGESGHFARDCTSGG 199
>At5g52380.1 68418.m06499 zinc knuckle (CCHC-type) family protein
contains Pfam domain, PF00098: Zinc knuckle
Length = 268
Score = 45.6 bits (103), Expect = 1e-05
Identities = 22/62 (35%), Positives = 31/62 (50%), Gaps = 9/62 (14%)
Frame = +2
Query: 239 EKCFKCNRTGHFARDCKEEAD-----RCYRCNGTGHIARECAQSPDEPS----CYNCNKT 391
E CF C+ H A+ C E+++ C +C GH + C + +E S CYNC T
Sbjct: 74 EGCFICHSKTHIAKLCPEKSEWERNKICLQCRRRGHSLKNCPEKNNESSEKKLCYNCGDT 133
Query: 392 GH 397
GH
Sbjct: 134 GH 135
Score = 44.0 bits (99), Expect = 4e-05
Identities = 23/99 (23%), Positives = 40/99 (40%), Gaps = 12/99 (12%)
Frame = +2
Query: 140 SSVCYKCNRTGHFARECTQGGVGARDAGFNRQREKCFKCNRTGHFARDCKEEAD------ 301
+ +C +C R GH + C + + +++ C+ C TGH C +
Sbjct: 98 NKICLQCRRRGHSLKNCPEKN------NESSEKKLCYNCGDTGHSLSHCPYPMEDGGTKF 151
Query: 302 -RCYRCNGTGHIARECAQS-----PDEPSCYNCNKTGHI 400
C+ C G GHI++ C ++ P C C H+
Sbjct: 152 ASCFICKGQGHISKNCPENKHGIYPMGGCCKVCGSVAHL 190
>At4g38680.1 68417.m05477 cold-shock DNA-binding family protein
contains Pfam domains PF00313: 'Cold-shock' DNA-binding
domain and PF00098: Zinc knuckle
Length = 203
Score = 45.6 bits (103), Expect = 1e-05
Identities = 24/70 (34%), Positives = 30/70 (42%), Gaps = 2/70 (2%)
Frame = +2
Query: 143 SVCYKCNRTGHFARECTQ--GGVGARDAGFNRQREKCFKCNRTGHFARDCKEEADRCYRC 316
S CYKC GH AR+C++ GG G G+ G R CY C
Sbjct: 129 SDCYKCGEPGHMARDCSEGGGGYGGGGGGYGGGGGYGGGGGGYGGGGRGGGGGGGSCYSC 188
Query: 317 NGTGHIAREC 346
+GH AR+C
Sbjct: 189 GESGHFARDC 198
Score = 37.9 bits (84), Expect = 0.003
Identities = 25/79 (31%), Positives = 30/79 (37%), Gaps = 12/79 (15%)
Frame = +2
Query: 197 GGVGARDAGFNRQREKCFKCNRTGHFARDCKEEADRC------------YRCNGTGHIAR 340
GG G R G R C+KC GH ARDC E Y G G+
Sbjct: 116 GGYGGRGGG-GRGGSDCYKCGEPGHMARDCSEGGGGYGGGGGGYGGGGGYGGGGGGYGGG 174
Query: 341 ECAQSPDEPSCYNCNKTGH 397
SCY+C ++GH
Sbjct: 175 GRGGGGGGGSCYSCGESGH 193
Score = 37.5 bits (83), Expect = 0.003
Identities = 12/18 (66%), Positives = 14/18 (77%)
Frame = +2
Query: 149 CYKCNRTGHFARECTQGG 202
CY C +GHFAR+CT GG
Sbjct: 185 CYSCGESGHFARDCTSGG 202
>At5g36240.1 68418.m04372 zinc knuckle (CCHC-type) family protein
contains Pfam domain, PF00098: Zinc knuckle
Length = 254
Score = 44.4 bits (100), Expect = 3e-05
Identities = 28/95 (29%), Positives = 38/95 (40%), Gaps = 9/95 (9%)
Frame = +2
Query: 140 SSVCYKCNRTGHFARECTQGGVGARDAGFNRQREKCFKCNRTGHFARDCKEEADR----- 304
+ VC +C GH C + + + KC+ CN GH C E
Sbjct: 25 AEVCLRCGGFGHDMTLCKY-----EYSHEDLKNIKCYVCNSLGHLC--CIEPGHTQSWTV 77
Query: 305 -CYRCNGTGHIARECAQSPDE---PSCYNCNKTGH 397
CYRC GH C + D+ PSC+ C + GH
Sbjct: 78 SCYRCGQLGHTGLACGRHYDDSVSPSCFICGREGH 112
Score = 37.1 bits (82), Expect = 0.004
Identities = 22/67 (32%), Positives = 27/67 (40%), Gaps = 12/67 (17%)
Frame = +2
Query: 233 QREKCFKCNRTGHFARDCKEEAD-------RCYRCNGTGHIARECAQSPDEP-----SCY 376
+ E C +C GH CK E +CY CN GH+ C P SCY
Sbjct: 24 EAEVCLRCGGFGHDMTLCKYEYSHEDLKNIKCYVCNSLGHL---CCIEPGHTQSWTVSCY 80
Query: 377 NCNKTGH 397
C + GH
Sbjct: 81 RCGQLGH 87
Score = 35.1 bits (77), Expect = 0.018
Identities = 24/77 (31%), Positives = 32/77 (41%), Gaps = 4/77 (5%)
Frame = +2
Query: 137 SSSVCYKCN----RTGHFARECTQGGVGARDAGFNRQREKCFKCNRTGHFARDCKEEADR 304
SSSV ++ N GHF +C +R+ E N + +E
Sbjct: 139 SSSVRFQENTREEEEGHFEHQCPDSSSVCFQE-ISRE-EGFISLNSSSKSTSKGRETRRL 196
Query: 305 CYRCNGTGHIARECAQS 355
CY C G GHIAR+C S
Sbjct: 197 CYECKGKGHIARDCPNS 213
Score = 33.9 bits (74), Expect = 0.041
Identities = 23/74 (31%), Positives = 29/74 (39%)
Frame = +2
Query: 149 CYKCNRTGHFARECTQGGVGARDAGFNRQREKCFKCNRTGHFARDCKEEADRCYRCNGTG 328
CY+C + GH C G D+ CF C R GHF C C+ + +
Sbjct: 79 CYRCGQLGHTGLAC---GRHYDDS----VSPSCFICGREGHFEHQCHNSFSVCFPEDSS- 130
Query: 329 HIARECAQSPDEPS 370
EC Q PD S
Sbjct: 131 --EDEC-QGPDSSS 141
Score = 31.9 bits (69), Expect = 0.16
Identities = 15/42 (35%), Positives = 19/42 (45%), Gaps = 5/42 (11%)
Frame = +2
Query: 290 EEADRCYRCNGTGHIARECA-----QSPDEPSCYNCNKTGHI 400
+EA+ C RC G GH C + CY CN GH+
Sbjct: 23 DEAEVCLRCGGFGHDMTLCKYEYSHEDLKNIKCYVCNSLGHL 64
>At2g24590.1 68415.m02936 splicing factor, putative similar to to
RSZp22 protein [Arabidopsis thaliana]
gi|2582645|emb|CAA05352
Length = 196
Score = 39.1 bits (87), Expect = 0.001
Identities = 16/31 (51%), Positives = 21/31 (67%), Gaps = 1/31 (3%)
Frame = +2
Query: 149 CYKCNRTGHFAREC-TQGGVGARDAGFNRQR 238
CY+C +GHFAREC ++GG G R +R R
Sbjct: 98 CYECGESGHFARECRSRGGSGGRRRSRSRSR 128
Score = 36.3 bits (80), Expect = 0.008
Identities = 15/33 (45%), Positives = 20/33 (60%), Gaps = 2/33 (6%)
Frame = +2
Query: 197 GGVGARDAGFNRQRE--KCFKCNRTGHFARDCK 289
GG G D G R KC++C +GHFAR+C+
Sbjct: 80 GGRGGGDGGRGRGGSDLKCYECGESGHFARECR 112
Score = 29.5 bits (63), Expect = 0.88
Identities = 9/15 (60%), Positives = 11/15 (73%)
Frame = +2
Query: 302 RCYRCNGTGHIAREC 346
+CY C +GH AREC
Sbjct: 97 KCYECGESGHFAREC 111
>At4g31580.1 68417.m04485 splicing factor RSZp22 (RSZP22) / 9G8-like
SR protein (SRZ22) identical to RSZp22 protein
[Arabidopsis thaliana] gi|2582645|emb|CAA05352, 9G8-like
SR protein [Arabidopsis thaliana] GI:3435094; contains
Pfam profiles PF00076: RNA recognition motif. (a.k.a.
RRM, RBD, or RNP domain) and PF00098: Zinc knuckle;
identical to cDNA 9G8-like SR protein (SRZ22) GI:3435093
Length = 200
Score = 38.7 bits (86), Expect = 0.001
Identities = 15/23 (65%), Positives = 17/23 (73%), Gaps = 1/23 (4%)
Frame = +2
Query: 149 CYKCNRTGHFAREC-TQGGVGAR 214
CY+C TGHFAREC +GG G R
Sbjct: 101 CYECGETGHFARECRNRGGTGRR 123
Score = 37.1 bits (82), Expect = 0.004
Identities = 14/32 (43%), Positives = 19/32 (59%)
Frame = +2
Query: 194 QGGVGARDAGFNRQREKCFKCNRTGHFARDCK 289
+GG G G KC++C TGHFAR+C+
Sbjct: 84 RGGGGGGRGGRGGSDLKCYECGETGHFARECR 115
Score = 31.1 bits (67), Expect = 0.29
Identities = 10/15 (66%), Positives = 11/15 (73%)
Frame = +2
Query: 302 RCYRCNGTGHIAREC 346
+CY C TGH AREC
Sbjct: 100 KCYECGETGHFAREC 114
>At3g26420.1 68416.m03295 glycine-rich RNA-binding protein similar
to RNA-binding protein (RZ-1) GB:BAA12064 [Nicotiana
sylvestris]; contains Pfam profile: PF00076 RNA
recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 245
Score = 38.7 bits (86), Expect = 0.001
Identities = 18/44 (40%), Positives = 24/44 (54%), Gaps = 9/44 (20%)
Frame = +2
Query: 200 GVGARDAGFNRQREK---------CFKCNRTGHFARDCKEEADR 304
G RD G++R R + CFKC + GHFAR+C E+ R
Sbjct: 96 GDRGRDRGYDRDRSRPSGGRGGGDCFKCGKPGHFARECPSESSR 139
Score = 33.1 bits (72), Expect = 0.071
Identities = 13/25 (52%), Positives = 16/25 (64%)
Frame = +2
Query: 149 CYKCNRTGHFARECTQGGVGARDAG 223
C+KC + GHFAREC +RD G
Sbjct: 120 CFKCGKPGHFARECP--SESSRDGG 142
Score = 29.1 bits (62), Expect = 1.2
Identities = 17/51 (33%), Positives = 25/51 (49%)
Frame = +2
Query: 194 QGGVGARDAGFNRQREKCFKCNRTGHFARDCKEEADRCYRCNGTGHIAREC 346
QGG G RD +R R++ + +R+ C++C GH AREC
Sbjct: 87 QGGAG-RDNDGDRGRDRGYDRDRSRPSGG---RGGGDCFKCGKPGHFAREC 133
>At1g60650.2 68414.m06828 glycine-rich RNA-binding protein, putative
similar to RNA binding protein(RZ-1) GI:1435061 from
[Nicotiana sylvestris]; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 292
Score = 37.9 bits (84), Expect = 0.003
Identities = 16/35 (45%), Positives = 20/35 (57%)
Frame = +2
Query: 197 GGVGARDAGFNRQREKCFKCNRTGHFARDCKEEAD 301
GG +R G ++CFKC R GH+ARDC D
Sbjct: 104 GGYSSRGKG---TEDECFKCRRPGHWARDCPSTGD 135
Score = 31.9 bits (69), Expect = 0.16
Identities = 11/24 (45%), Positives = 15/24 (62%)
Frame = +2
Query: 131 KMSSSVCYKCNRTGHFARECTQGG 202
K + C+KC R GH+AR+C G
Sbjct: 111 KGTEDECFKCRRPGHWARDCPSTG 134
Score = 30.7 bits (66), Expect = 0.38
Identities = 11/33 (33%), Positives = 18/33 (54%)
Frame = +2
Query: 266 GHFARDCKEEADRCYRCNGTGHIARECAQSPDE 364
G ++ K D C++C GH AR+C + D+
Sbjct: 104 GGYSSRGKGTEDECFKCRRPGHWARDCPSTGDD 136
>At1g60650.1 68414.m06827 glycine-rich RNA-binding protein, putative
similar to RNA binding protein(RZ-1) GI:1435061 from
[Nicotiana sylvestris]; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 292
Score = 37.9 bits (84), Expect = 0.003
Identities = 16/35 (45%), Positives = 20/35 (57%)
Frame = +2
Query: 197 GGVGARDAGFNRQREKCFKCNRTGHFARDCKEEAD 301
GG +R G ++CFKC R GH+ARDC D
Sbjct: 104 GGYSSRGKG---TEDECFKCRRPGHWARDCPSTGD 135
Score = 31.9 bits (69), Expect = 0.16
Identities = 11/24 (45%), Positives = 15/24 (62%)
Frame = +2
Query: 131 KMSSSVCYKCNRTGHFARECTQGG 202
K + C+KC R GH+AR+C G
Sbjct: 111 KGTEDECFKCRRPGHWARDCPSTG 134
Score = 30.7 bits (66), Expect = 0.38
Identities = 11/33 (33%), Positives = 18/33 (54%)
Frame = +2
Query: 266 GHFARDCKEEADRCYRCNGTGHIARECAQSPDE 364
G ++ K D C++C GH AR+C + D+
Sbjct: 104 GGYSSRGKGTEDECFKCRRPGHWARDCPSTGDD 136
>At1g54490.1 68414.m06215 5'-3' exoribonuclease (XRN4) identical to
XRN4 [Arabidopsis thaliana] GI:11875626; contains Pfam
domain PF03159: Putative 5'-3' exonuclease domain
Length = 947
Score = 37.1 bits (82), Expect = 0.004
Identities = 13/18 (72%), Positives = 15/18 (83%)
Frame = +2
Query: 233 QREKCFKCNRTGHFARDC 286
Q+EKCF C +TGHFA DC
Sbjct: 261 QQEKCFVCGQTGHFASDC 278
Score = 28.7 bits (61), Expect = 1.5
Identities = 11/24 (45%), Positives = 16/24 (66%)
Frame = +2
Query: 149 CYKCNRTGHFARECTQGGVGARDA 220
C+ C +TGHFA +C G G+ +A
Sbjct: 265 CFVCGQTGHFASDC-PGKSGSNNA 287
>At5g04280.1 68418.m00421 glycine-rich RNA-binding protein
Length = 310
Score = 36.7 bits (81), Expect = 0.006
Identities = 16/32 (50%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
Frame = +2
Query: 194 QGGVGARDAGFNRQRE-KCFKCNRTGHFARDC 286
+G G G R E +CFKC R GH+ARDC
Sbjct: 110 KGSFGGGGGGGGRVGEDECFKCGRVGHWARDC 141
Score = 34.7 bits (76), Expect = 0.023
Identities = 14/35 (40%), Positives = 20/35 (57%), Gaps = 2/35 (5%)
Frame = +2
Query: 131 KMSSSVCYKCNRTGHFARECTQ--GGVGARDAGFN 229
++ C+KC R GH+AR+C GG G GF+
Sbjct: 122 RVGEDECFKCGRVGHWARDCPSAGGGRGGPVGGFS 156
Score = 28.7 bits (61), Expect = 1.5
Identities = 15/52 (28%), Positives = 24/52 (46%)
Frame = +2
Query: 191 TQGGVGARDAGFNRQREKCFKCNRTGHFARDCKEEADRCYRCNGTGHIAREC 346
+ G G RD+G++ + F G + D C++C GH AR+C
Sbjct: 94 SHGSRGGRDSGYSIAGKGSFGGGGGG----GGRVGEDECFKCGRVGHWARDC 141
>At1g23860.2 68414.m03010 splicing factor RSZp21 (RSZP21) / 9G8-like
SR protein (SRZ21) nearly identical to 9G8-like splicing
factor SRZ21 [Arabidopsis thaliana] GI:3435096, RSZp21
protein [Arabidopsis thaliana] GI:2582643
Length = 187
Score = 36.3 bits (80), Expect = 0.008
Identities = 14/32 (43%), Positives = 20/32 (62%)
Frame = +2
Query: 194 QGGVGARDAGFNRQREKCFKCNRTGHFARDCK 289
+GG G R G + KC++C GHFAR+C+
Sbjct: 76 RGGGGGRRGGI--EDSKCYECGELGHFARECR 105
Score = 35.1 bits (77), Expect = 0.018
Identities = 12/22 (54%), Positives = 15/22 (68%)
Frame = +2
Query: 134 MSSSVCYKCNRTGHFARECTQG 199
+ S CY+C GHFAREC +G
Sbjct: 86 IEDSKCYECGELGHFARECRRG 107
Score = 30.3 bits (65), Expect = 0.50
Identities = 14/32 (43%), Positives = 15/32 (46%)
Frame = +2
Query: 251 KCNRTGHFARDCKEEADRCYRCNGTGHIAREC 346
K R G R E +CY C GH AREC
Sbjct: 73 KGGRGGGGGRRGGIEDSKCYECGELGHFAREC 104
>At1g23860.1 68414.m03009 splicing factor RSZp21 (RSZP21) / 9G8-like
SR protein (SRZ21) nearly identical to 9G8-like splicing
factor SRZ21 [Arabidopsis thaliana] GI:3435096, RSZp21
protein [Arabidopsis thaliana] GI:2582643
Length = 187
Score = 36.3 bits (80), Expect = 0.008
Identities = 14/32 (43%), Positives = 20/32 (62%)
Frame = +2
Query: 194 QGGVGARDAGFNRQREKCFKCNRTGHFARDCK 289
+GG G R G + KC++C GHFAR+C+
Sbjct: 76 RGGGGGRRGGI--EDSKCYECGELGHFARECR 105
Score = 35.1 bits (77), Expect = 0.018
Identities = 12/22 (54%), Positives = 15/22 (68%)
Frame = +2
Query: 134 MSSSVCYKCNRTGHFARECTQG 199
+ S CY+C GHFAREC +G
Sbjct: 86 IEDSKCYECGELGHFARECRRG 107
Score = 30.3 bits (65), Expect = 0.50
Identities = 14/32 (43%), Positives = 15/32 (46%)
Frame = +2
Query: 251 KCNRTGHFARDCKEEADRCYRCNGTGHIAREC 346
K R G R E +CY C GH AREC
Sbjct: 73 KGGRGGGGGRRGGIEDSKCYECGELGHFAREC 104
>At5g20220.1 68418.m02407 zinc knuckle (CCHC-type) family protein
contains Pfam domain, PF00098: Zinc knuckle
Length = 393
Score = 34.7 bits (76), Expect = 0.023
Identities = 22/83 (26%), Positives = 31/83 (37%)
Frame = +2
Query: 149 CYKCNRTGHFARECTQGGVGARDAGFNRQREKCFKCNRTGHFARDCKEEADRCYRCNGTG 328
C C GH R C + G + + KC C GH +R C++ C+G
Sbjct: 292 CRGCGGKGHNRRTCPKSK-SIVTKGISTRYHKCGICGERGHNSRTCRKPTGVNPSCSGEN 350
Query: 329 HIARECAQSPDEPSCYNCNKTGH 397
+ E +C C K GH
Sbjct: 351 --SGEDGVGKITYACGFCKKMGH 371
Score = 30.7 bits (66), Expect = 0.38
Identities = 17/43 (39%), Positives = 20/43 (46%), Gaps = 6/43 (13%)
Frame = +2
Query: 245 CFKCNRTGHFARDCKE---EADRCYRCNGTG---HIARECAQS 355
C C + GH C E ADR +RC G G H R C +S
Sbjct: 266 CKNCGQEGHRRHYCPELGTNADRKFRCRGCGGKGHNRRTCPKS 308
>At2g12880.1 68415.m01404 zinc knuckle (CCHC-type) family protein
contains Pfam domain, PF00098: Zinc knuckle
Length = 119
Score = 34.3 bits (75), Expect = 0.031
Identities = 20/61 (32%), Positives = 27/61 (44%)
Frame = +2
Query: 149 CYKCNRTGHFARECTQGGVGARDAGFNRQREKCFKCNRTGHFARDCKEEADRCYRCNGTG 328
CYKC + GHFAR C V + C+ C+ GH + C + R + N G
Sbjct: 36 CYKCGKLGHFARSCHV--VTQPTTAY----ITCYFCSEEGHRSNGCPNK--RTDQVNPKG 87
Query: 329 H 331
H
Sbjct: 88 H 88
Score = 32.7 bits (71), Expect = 0.094
Identities = 14/35 (40%), Positives = 18/35 (51%), Gaps = 4/35 (11%)
Frame = +2
Query: 305 CYRCNGTGHIAREC--AQSPDEP--SCYNCNKTGH 397
CY+C GH AR C P +CY C++ GH
Sbjct: 36 CYKCGKLGHFARSCHVVTQPTTAYITCYFCSEEGH 70
>At3g02820.1 68416.m00274 zinc knuckle (CCHC-type) family protein
contains Pfam domain, PF00098: Zinc knuckle
Length = 282
Score = 33.1 bits (72), Expect = 0.071
Identities = 11/18 (61%), Positives = 13/18 (72%)
Frame = +2
Query: 245 CFKCNRTGHFARDCKEEA 298
CFKC R GH++RDC A
Sbjct: 8 CFKCGRPGHWSRDCPSSA 25
Score = 29.1 bits (62), Expect = 1.2
Identities = 8/14 (57%), Positives = 12/14 (85%)
Frame = +2
Query: 149 CYKCNRTGHFAREC 190
C+KC R GH++R+C
Sbjct: 8 CFKCGRPGHWSRDC 21
>At3g55340.1 68416.m06146 RNA recognition motif (RRM)-containing
protein low similarity to nucleolar phosphoprotein
(Nopp52), Tetrahymena thermophila, EMBL:TT51555;
contains InterPro entry IPR000504: RNA-binding region
RNP-1 (RNA recognition motif) (RRM)
Length = 597
Score = 31.9 bits (69), Expect = 0.16
Identities = 17/64 (26%), Positives = 24/64 (37%), Gaps = 1/64 (1%)
Frame = +2
Query: 137 SSSVCYKCNRTGHFARECTQGGVGARDAGFNR-QREKCFKCNRTGHFARDCKEEADRCYR 313
+S Y N T E GG A G + +R C++C GH + C +
Sbjct: 444 NSGDSYYMNETYASTNETYNGGYSASAVGTGKVKRRNCYECGEKGHLSTACPIKLQNTSH 503
Query: 314 CNGT 325
N T
Sbjct: 504 TNST 507
Score = 27.9 bits (59), Expect = 2.7
Identities = 9/21 (42%), Positives = 12/21 (57%)
Frame = +2
Query: 128 SKMSSSVCYKCNRTGHFAREC 190
SK+ VCY+C GH + C
Sbjct: 390 SKVKRRVCYECGEKGHLSTAC 410
>At1g75660.1 68414.m08789 5'-3' exoribonuclease (XRN3) identical to
XRN3 [Arabidopsis thaliana] gi|11875628|gb|AAG40732
Length = 1020
Score = 31.9 bits (69), Expect = 0.16
Identities = 10/19 (52%), Positives = 15/19 (78%)
Frame = +2
Query: 233 QREKCFKCNRTGHFARDCK 289
Q+E+CF C + GHFA +C+
Sbjct: 260 QQERCFLCGQMGHFASNCE 278
>At5g49930.1 68418.m06182 zinc knuckle (CCHC-type) family protein
contains Pfam domain, PF00098: Zinc knuckle
Length = 1080
Score = 30.7 bits (66), Expect = 0.38
Identities = 8/15 (53%), Positives = 12/15 (80%)
Frame = +2
Query: 146 VCYKCNRTGHFAREC 190
+CY+C + GH AR+C
Sbjct: 925 ICYRCKKVGHLARDC 939
Score = 30.7 bits (66), Expect = 0.38
Identities = 11/21 (52%), Positives = 15/21 (71%), Gaps = 2/21 (9%)
Frame = +2
Query: 245 CFKCNRTGHFARDC--KEEAD 301
C++C + GH ARDC KE +D
Sbjct: 926 CYRCKKVGHLARDCHGKETSD 946
Score = 29.9 bits (64), Expect = 0.66
Identities = 9/14 (64%), Positives = 11/14 (78%)
Frame = +2
Query: 305 CYRCNGTGHIAREC 346
CYRC GH+AR+C
Sbjct: 926 CYRCKKVGHLARDC 939
>At5g48030.1 68418.m05935 DNAJ heat shock protein, mitochondrially
targeted (GFA2) 99.8% identical to mitochondrially
targeted DnaJ protein GFA2 [Arabidopsis thaliana]
GI:21429604; contains Pfam profiles PF00226: DnaJ
domain, PF01556: DnaJ C terminal region, PF00684: DnaJ
central domain (4 repeats)
Length = 456
Score = 30.3 bits (65), Expect = 0.50
Identities = 17/59 (28%), Positives = 23/59 (38%), Gaps = 2/59 (3%)
Frame = +2
Query: 158 CNRTGHFARECTQGGVGARDAGFNRQREKCFKCNRTG--HFARDCKEEADRCYRCNGTG 328
C++T F E G + +REKC CN +G R C +C G G
Sbjct: 226 CSKTVTFQTEMACNTCGGQGVPPGTKREKCKACNGSGMTSLRRGMLSIQTTCQKCGGAG 284
>At4g17410.1 68417.m02607 expressed protein
Length = 744
Score = 30.3 bits (65), Expect = 0.50
Identities = 9/19 (47%), Positives = 14/19 (73%)
Frame = +2
Query: 146 VCYKCNRTGHFARECTQGG 202
VC++CN +GHF + C+ G
Sbjct: 120 VCHRCNVSGHFIQHCSTNG 138
>At3g31950.1 68416.m04046 hypothetical protein
Length = 507
Score = 29.9 bits (64), Expect = 0.66
Identities = 13/46 (28%), Positives = 18/46 (39%), Gaps = 9/46 (19%)
Frame = +2
Query: 236 REKCFKCNRTGHFARDC---------KEEADRCYRCNGTGHIAREC 346
+ C C T H DC + +CY C G GH++ C
Sbjct: 284 KRPCDICGHTDHLTEDCLYSSPTMPYMDNYTKCYCCRGLGHVSMYC 329
>At1g53720.1 68414.m06113 cyclophilin-RNA interacting protein,
putative
Length = 506
Score = 29.9 bits (64), Expect = 0.66
Identities = 9/24 (37%), Positives = 15/24 (62%)
Frame = +2
Query: 287 KEEADRCYRCNGTGHIARECAQSP 358
K + + C++C T HIA++C P
Sbjct: 336 KGKGNGCFKCGSTDHIAKDCVGGP 359
Score = 28.7 bits (61), Expect = 1.5
Identities = 9/14 (64%), Positives = 10/14 (71%)
Frame = +2
Query: 245 CFKCNRTGHFARDC 286
CFKC T H A+DC
Sbjct: 342 CFKCGSTDHIAKDC 355
Score = 27.5 bits (58), Expect = 3.5
Identities = 8/17 (47%), Positives = 11/17 (64%)
Frame = +2
Query: 149 CYKCNRTGHFARECTQG 199
C+KC T H A++C G
Sbjct: 342 CFKCGSTDHIAKDCVGG 358
>At5g43260.1 68418.m05286 chaperone protein dnaJ-related similar to
Chaperone protein dnaJ (SP:Q9WZV3) [Thermotoga maritima]
Length = 97
Score = 29.5 bits (63), Expect = 0.88
Identities = 12/32 (37%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
Frame = +2
Query: 302 RCYRCNGTGHIARECAQ-SPDEPSCYNCNKTG 394
RC CNGTG + C++ S + C C+ +G
Sbjct: 37 RCPTCNGTGRVTCFCSRWSDGDVGCRRCSGSG 68
>At5g26820.1 68418.m03200 ferroportin-related low similarity to
ferroportin1 [Danio rerio] GI:7109245
Length = 598
Score = 29.1 bits (62), Expect = 1.2
Identities = 20/41 (48%), Positives = 21/41 (51%)
Frame = -2
Query: 242 SPAAG*SQRRGRLRHLACTRGRSAPSCCTCSIRLNSFSIRC 120
SP A S R R RS+PSC S RLNSFS RC
Sbjct: 29 SPVAFSSVRYHRFHSCRWLSLRSSPSC---SRRLNSFSSRC 66
>At3g10400.1 68416.m01246 RNA recognition motif (RRM)-containing
protein low similarity to splicing factor SC35
[Arabidopsis thaliana] GI:9843653; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 261
Score = 29.1 bits (62), Expect = 1.2
Identities = 10/25 (40%), Positives = 15/25 (60%)
Frame = +2
Query: 143 SVCYKCNRTGHFARECTQGGVGARD 217
S CY+C GH + EC + +G R+
Sbjct: 152 SRCYECGDEGHLSYECPKNQLGPRE 176
Score = 28.3 bits (60), Expect = 2.0
Identities = 8/22 (36%), Positives = 14/22 (63%)
Frame = +2
Query: 290 EEADRCYRCNGTGHIARECAQS 355
++ RCY C GH++ EC ++
Sbjct: 149 KDKSRCYECGDEGHLSYECPKN 170
>At5g47430.1 68418.m05844 expressed protein
Length = 879
Score = 28.7 bits (61), Expect = 1.5
Identities = 9/19 (47%), Positives = 12/19 (63%)
Frame = +2
Query: 146 VCYKCNRTGHFARECTQGG 202
VC++CN GHF + C G
Sbjct: 209 VCHRCNIPGHFIQHCPTNG 227
Score = 26.2 bits (55), Expect = 8.2
Identities = 9/22 (40%), Positives = 11/22 (50%)
Frame = +2
Query: 245 CFKCNRTGHFARDCKEEADRCY 310
C +CN GHF + C D Y
Sbjct: 210 CHRCNIPGHFIQHCPTNGDPNY 231
>At5g43630.1 68418.m05333 zinc knuckle (CCHC-type) family protein
contains Pfam domain PF00098: Zinc knuckle
Length = 831
Score = 28.7 bits (61), Expect = 1.5
Identities = 10/19 (52%), Positives = 11/19 (57%)
Frame = +2
Query: 245 CFKCNRTGHFARDCKEEAD 301
CF C + GH RDC E D
Sbjct: 604 CFYCGKKGHCLRDCLEVTD 622
Score = 26.6 bits (56), Expect = 6.2
Identities = 16/56 (28%), Positives = 25/56 (44%), Gaps = 9/56 (16%)
Frame = +2
Query: 146 VCYKCNRTGHFARECTQ-GGVGARDAGFN----RQREK----CFKCNRTGHFARDC 286
+C+ C + GH R+C + RD N RE+ C +C + H+A C
Sbjct: 603 ICFYCGKKGHCLRDCLEVTDTELRDLVQNISVRNGREEASSLCIRCFQLSHWAATC 658
Score = 26.2 bits (55), Expect = 8.2
Identities = 14/48 (29%), Positives = 21/48 (43%), Gaps = 2/48 (4%)
Frame = +2
Query: 224 FNRQREKCFKCNRTGHFARDCKEEADR--CYRCNGTGHIARECAQSPD 361
F R+ E +G A + +EE C+ C GH R+C + D
Sbjct: 575 FARRLEAMKSIMPSGSLAENAEEEQRDLICFYCGKKGHCLRDCLEVTD 622
>At5g42540.1 68418.m05178 5'-3' exoribonuclease (XRN2) identical to
XRN2 [Arabidopsis thaliana] GI:11875630; contains Pfam
domain PF03159: Putative 5'-3' exonuclease domain
Length = 1012
Score = 28.7 bits (61), Expect = 1.5
Identities = 11/27 (40%), Positives = 15/27 (55%)
Frame = +2
Query: 224 FNRQREKCFKCNRTGHFARDCKEEADR 304
F + KCF C + GH A DC+ + R
Sbjct: 259 FPGEEGKCFLCGQEGHRAADCEGKIKR 285
>At5g05660.1 68418.m00622 zinc finger (NF-X1 type) family protein
contains PF01422: NF-X1 type zinc finger
Length = 912
Score = 28.7 bits (61), Expect = 1.5
Identities = 9/23 (39%), Positives = 12/23 (52%)
Frame = -2
Query: 323 CHYICSNGQPPPCSRAQSARCGC 255
C IC +G+ PPC +C C
Sbjct: 255 CREICHDGECPPCRERAVYKCSC 277
>At1g54930.1 68414.m06273 zinc knuckle (CCHC-type) family protein
contains INTERPRO domain, IPR001878: Zn-finger CCHC type
Length = 353
Score = 28.7 bits (61), Expect = 1.5
Identities = 9/19 (47%), Positives = 14/19 (73%)
Frame = +2
Query: 134 MSSSVCYKCNRTGHFAREC 190
MSS C+ C++ GH+A+ C
Sbjct: 1 MSSGDCFHCHQPGHWAKNC 19
Score = 26.2 bits (55), Expect = 8.2
Identities = 7/14 (50%), Positives = 12/14 (85%)
Frame = +2
Query: 245 CFKCNRTGHFARDC 286
CF C++ GH+A++C
Sbjct: 6 CFHCHQPGHWAKNC 19
>At5g38600.1 68418.m04669 proline-rich spliceosome-associated (PSP)
family protein / zinc knuckle (CCHC-type) family protein
contains Pfam domains PF00098: Zinc knuckle, PF04046:
PSP
Length = 532
Score = 28.3 bits (60), Expect = 2.0
Identities = 10/33 (30%), Positives = 16/33 (48%)
Frame = +2
Query: 290 EEADRCYRCNGTGHIARECAQSPDEPSCYNCNK 388
++ RC+ C G H REC + D + + K
Sbjct: 238 DDPPRCFNCGGYSHSLRECPRPFDRSAVNSARK 270
>At1g10450.1 68414.m01176 paired amphipathic helix repeat-containing
protein similar to Sin3 protein [Yarrowia lipolytica]
GI:18076824; contains Pfam profile PF02671: Paired
amphipathic helix repeat
Length = 1173
Score = 28.3 bits (60), Expect = 2.0
Identities = 18/71 (25%), Positives = 29/71 (40%), Gaps = 9/71 (12%)
Frame = +2
Query: 164 RTGHFARECTQGGVGARDAGFNRQREKCFKCNRTGHFARD---------CKEEADRCYRC 316
R+ + C + G + + ++E C K + A + C EE +R C
Sbjct: 778 RSNKDKQSCDKKGAKNKTRAEDDKQENCHKLSENNKTASEMLVSGTKVSCHEENNRVMNC 837
Query: 317 NGTGHIARECA 349
NG G +A E A
Sbjct: 838 NGRGSVAGEMA 848
>At1g67210.2 68414.m07647 proline-rich spliceosome-associated (PSP)
family protein / zinc knuckle (CCHC-type) family protein
contains Pfam domains PF00098: Zinc knuckle, PF04046:
PSP
Length = 403
Score = 27.5 bits (58), Expect = 3.5
Identities = 15/47 (31%), Positives = 19/47 (40%), Gaps = 2/47 (4%)
Frame = +2
Query: 242 KCFKCNRTGHFARDCKEEADRCYRCNGTGHIARECAQSPDE--PSCY 376
+CF C H R+C DR N R+ Q+P PS Y
Sbjct: 197 RCFNCGAYSHSIRECPRPFDRSAVSNARRQHKRKRNQTPGSRLPSRY 243
Score = 26.6 bits (56), Expect = 6.2
Identities = 9/33 (27%), Positives = 15/33 (45%)
Frame = +2
Query: 290 EEADRCYRCNGTGHIARECAQSPDEPSCYNCNK 388
++ RC+ C H REC + D + N +
Sbjct: 193 DDPPRCFNCGAYSHSIRECPRPFDRSAVSNARR 225
>At1g67210.1 68414.m07646 proline-rich spliceosome-associated (PSP)
family protein / zinc knuckle (CCHC-type) family protein
contains Pfam domains PF00098: Zinc knuckle, PF04046:
PSP
Length = 405
Score = 27.5 bits (58), Expect = 3.5
Identities = 15/47 (31%), Positives = 19/47 (40%), Gaps = 2/47 (4%)
Frame = +2
Query: 242 KCFKCNRTGHFARDCKEEADRCYRCNGTGHIARECAQSPDE--PSCY 376
+CF C H R+C DR N R+ Q+P PS Y
Sbjct: 197 RCFNCGAYSHSIRECPRPFDRSAVSNARRQHKRKRNQTPGSRLPSRY 243
Score = 26.6 bits (56), Expect = 6.2
Identities = 9/33 (27%), Positives = 15/33 (45%)
Frame = +2
Query: 290 EEADRCYRCNGTGHIARECAQSPDEPSCYNCNK 388
++ RC+ C H REC + D + N +
Sbjct: 193 DDPPRCFNCGAYSHSIRECPRPFDRSAVSNARR 225
>At1g26260.2 68414.m03204 basic helix-loop-helix (bHLH) family
protein similar to bHLH transcription factor GBOF-1
GI:5923912 from [Tulipa gesneriana]
Length = 390
Score = 27.5 bits (58), Expect = 3.5
Identities = 12/38 (31%), Positives = 18/38 (47%)
Frame = +2
Query: 191 TQGGVGARDAGFNRQREKCFKCNRTGHFARDCKEEADR 304
+ GG G DA + K F + +DC+EE D+
Sbjct: 154 SSGGNGHDDAKCGQTSSKGFSSKKRKRIGKDCEEEEDK 191
>At1g26260.1 68414.m03203 basic helix-loop-helix (bHLH) family
protein similar to bHLH transcription factor GBOF-1
GI:5923912 from [Tulipa gesneriana]
Length = 390
Score = 27.5 bits (58), Expect = 3.5
Identities = 12/38 (31%), Positives = 18/38 (47%)
Frame = +2
Query: 191 TQGGVGARDAGFNRQREKCFKCNRTGHFARDCKEEADR 304
+ GG G DA + K F + +DC+EE D+
Sbjct: 154 SSGGNGHDDAKCGQTSSKGFSSKKRKRIGKDCEEEEDK 191
>At5g34870.1 68418.m04106 zinc knuckle (CCHC-type) family protein
contains Pfam domain, PF00098: Zinc knuckle
Length = 516
Score = 27.1 bits (57), Expect = 4.7
Identities = 11/36 (30%), Positives = 17/36 (47%)
Frame = +2
Query: 239 EKCFKCNRTGHFARDCKEEADRCYRCNGTGHIAREC 346
E+C + + DC +CY C G GH++ C
Sbjct: 347 EQCLHPPQAMPYMVDCA----KCYSCGGVGHVSMYC 378
>At5g13920.1 68418.m01628 zinc knuckle (CCHC-type) family protein
contains Pfam domain, PF00098: Zinc knuckle
Length = 415
Score = 27.1 bits (57), Expect = 4.7
Identities = 8/18 (44%), Positives = 11/18 (61%)
Frame = +2
Query: 233 QREKCFKCNRTGHFARDC 286
Q CF+C + GH+ DC
Sbjct: 7 QTGDCFRCRQAGHWINDC 24
>At4g30996.1 68417.m04401 expressed protein
Length = 172
Score = 27.1 bits (57), Expect = 4.7
Identities = 14/30 (46%), Positives = 16/30 (53%)
Frame = -2
Query: 356 GSARTHALCAPCHYICSNGQPPPCSRAQSA 267
GS R ++LC PC C PPP S Q A
Sbjct: 38 GSTRANSLCPPCVCDC----PPPLSLLQIA 63
>At4g06479.1 68417.m00885 hypothetical protein
Length = 370
Score = 27.1 bits (57), Expect = 4.7
Identities = 12/46 (26%), Positives = 20/46 (43%), Gaps = 9/46 (19%)
Frame = +2
Query: 236 REKCFKCNRTGHFARDC---------KEEADRCYRCNGTGHIAREC 346
+ C C+ T H +C ++ +CY C G GH++ C
Sbjct: 295 KRPCEICSHTDHPTEECLYPPQTIPYTDDYAKCYYCEGMGHMSMYC 340
>At3g24070.1 68416.m03023 zinc knuckle (CCHC-type) family protein
contains Pfam profile: PF00098 zinc knuckle
Length = 262
Score = 27.1 bits (57), Expect = 4.7
Identities = 11/25 (44%), Positives = 14/25 (56%), Gaps = 1/25 (4%)
Frame = +2
Query: 215 DAGFNRQREK-CFKCNRTGHFARDC 286
D G ++ R K CF C H AR+C
Sbjct: 77 DIGMSKARFKFCFNCGDMNHLARNC 101
>At2g24640.1 68415.m02943 ubiquitin carboxyl-terminal hydrolase
family protein / zinc finger (MYND type) family protein
similar to ubiquitin-specific protease 15 (UBP15)
[Arabidopsis thaliana] GI:11993475; contains Pfam
profiles PF00443: Ubiquitin carboxyl-terminal hydrolase,
PF01753: MYND finger
Length = 672
Score = 27.1 bits (57), Expect = 4.7
Identities = 13/51 (25%), Positives = 20/51 (39%)
Frame = +2
Query: 203 VGARDAGFNRQREKCFKCNRTGHFARDCKEEADRCYRCNGTGHIARECAQS 355
VG GF+R + F + T + K +C RC + + C S
Sbjct: 41 VGGGSGGFDRDHRRDFMVSDTAECSVCGKATTKKCSRCKSVRYCSAACQTS 91
>At2g15180.1 68415.m01731 zinc knuckle (CCHC-type) family protein
contains Pfam domain PF00098: Zinc knuckle
Length = 474
Score = 27.1 bits (57), Expect = 4.7
Identities = 9/14 (64%), Positives = 10/14 (71%)
Frame = +2
Query: 305 CYRCNGTGHIAREC 346
CYRC GHIA+ C
Sbjct: 227 CYRCKQEGHIAKIC 240
>At5g60740.1 68418.m07621 ABC transporter family protein similar to
ATP-binding cassette, sub-family G, member 2
(Placenta-specific ATP- binding cassette transporter)
(Breast cancer resistance protein) SP:Q9UNQ0 from [Homo
sapiens]
Length = 1061
Score = 26.6 bits (56), Expect = 6.2
Identities = 25/76 (32%), Positives = 32/76 (42%), Gaps = 2/76 (2%)
Frame = -2
Query: 347 RTHALCAPCHYICSNGQP-PPCSRAQS-ARCGCT*STSPAAG*SQRRGRLRHLACTRGRS 174
RT LC P HY +GQP C A A G + +AG S + L CT+G
Sbjct: 208 RTTGLCDPYHYQLPSGQPNHTCGGADIWADIGSSSEVFCSAG-SFCPSTIDKLPCTKGHY 266
Query: 173 APSCCTCSIRLNSFSI 126
+ T LN F +
Sbjct: 267 CRTGSTA--ELNCFKL 280
>At5g32482.1 68418.m03835 zinc knuckle (CCHC-type) family protein
contains Pfam domain, PF00098: Zinc knuckle
Length = 341
Score = 26.6 bits (56), Expect = 6.2
Identities = 8/18 (44%), Positives = 12/18 (66%)
Frame = +2
Query: 137 SSSVCYKCNRTGHFAREC 190
+ SVCY+C H+A+ C
Sbjct: 274 AKSVCYRCGMDDHWAKTC 291
>At2g30470.1 68415.m03711 transcriptional factor B3 family protein
low similarity to FUSCA3 [Arabidopsis thaliana]
GI:3582518; contains Pfam profile PF02362: B3 DNA
binding domain
Length = 790
Score = 26.6 bits (56), Expect = 6.2
Identities = 14/38 (36%), Positives = 17/38 (44%), Gaps = 4/38 (10%)
Frame = +2
Query: 296 ADRCYRCNGTGHIARECAQSPDEPS----CYNCNKTGH 397
AD CYRC + C Q + S CY C+K H
Sbjct: 36 ADLCYRCGSAYESSLFCEQFHKDQSGWRECYLCSKRLH 73
>At1g31930.2 68414.m03924 extra-large guanine nucleotide binding
protein, putative / G-protein, putative similar to
extra-large G-protein (XLG) [Arabidopsis thaliana]
GI:3201680; contains Pfam profile PF00503: G-protein
alpha subunit
Length = 848
Score = 26.6 bits (56), Expect = 6.2
Identities = 18/56 (32%), Positives = 24/56 (42%)
Frame = +2
Query: 215 DAGFNRQREKCFKCNRTGHFARDCKEEADRCYRCNGTGHIARECAQSPDEPSCYNC 382
+A R+R K +C T R K++ CYRC +E DE C NC
Sbjct: 149 EAETERER-KVHEC--TASTKRRKKKKKSECYRCGKAKWENKETCIVCDEKYCGNC 201
>At1g31930.1 68414.m03923 extra-large guanine nucleotide binding
protein, putative / G-protein, putative similar to
extra-large G-protein (XLG) [Arabidopsis thaliana]
GI:3201680; contains Pfam profile PF00503: G-protein
alpha subunit
Length = 848
Score = 26.6 bits (56), Expect = 6.2
Identities = 18/56 (32%), Positives = 24/56 (42%)
Frame = +2
Query: 215 DAGFNRQREKCFKCNRTGHFARDCKEEADRCYRCNGTGHIARECAQSPDEPSCYNC 382
+A R+R K +C T R K++ CYRC +E DE C NC
Sbjct: 149 EAETERER-KVHEC--TASTKRRKKKKKSECYRCGKAKWENKETCIVCDEKYCGNC 201
>At1g10170.1 68414.m01147 NF-X1 type zinc finger family protein
contains Pfam PF01422: NF-X1 type zinc finger; similar
to transcriptional repressor NF-X1 (SP:Q12986) [Homo
sapiens]; similar to EST gb|T21002
Length = 1188
Score = 26.6 bits (56), Expect = 6.2
Identities = 18/50 (36%), Positives = 23/50 (46%), Gaps = 1/50 (2%)
Frame = -2
Query: 380 SCSTTARRG-SARTHALCAPCHYICSNGQPPPCSRAQSARCGCT*STSPA 234
SCS R+ R H C+ +C G PPC + +C C STS A
Sbjct: 502 SCSNVCRKLLPCRLHT----CNEMCHAGDCPPCLVQVNQKCRCG-STSRA 546
>At5g26742.1 68418.m03161 DEAD box RNA helicase (RH3) nearly
identical to RNA helicase [Arabidopsis thaliana]
GI:3775987; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain, PF00098: Zinc knuckle
Length = 747
Score = 26.2 bits (55), Expect = 8.2
Identities = 8/17 (47%), Positives = 12/17 (70%)
Frame = +2
Query: 245 CFKCNRTGHFARDCKEE 295
CF C ++GH A DC ++
Sbjct: 728 CFICGKSGHRATDCPDK 744
>At4g10630.1 68417.m01737 glutaredoxin family protein contains Pfam
profile PF00462: Glutaredoxin
Length = 334
Score = 26.2 bits (55), Expect = 8.2
Identities = 9/30 (30%), Positives = 15/30 (50%)
Frame = +2
Query: 305 CYRCNGTGHIARECAQSPDEPSCYNCNKTG 394
C+RCNG+ + + + C CN+ G
Sbjct: 297 CFRCNGSCKMVKGWGSASVVVRCNECNENG 326
>At1g71010.1 68414.m08192 phosphatidylinositol-4-phosphate 5-kinase
family protein low similarity to phosphatidylinositol
3,5-kinase [Candida albicans] GI:14571648; contains Pfam
profile PF01504: Phosphatidylinositol-4-phosphate
5-Kinase
Length = 1648
Score = 26.2 bits (55), Expect = 8.2
Identities = 15/42 (35%), Positives = 18/42 (42%), Gaps = 1/42 (2%)
Frame = +2
Query: 278 RDCKEEAD-RCYRCNGTGHIARECAQSPDEPSCYNCNKTGHI 400
RDC+ A RCY G AR C + PS N + I
Sbjct: 126 RDCRNMASIRCYPSRGEEEEARYCGKQLLSPSSDNYQDSSDI 167
>At1g28210.2 68414.m03463 DNAJ heat shock protein, putative strong
similarity to mitochondrial DnaJ protein (AtJ1)
GI:564030 from [Arabidopsis thaliana]; contains Pfam
profiles PF00226: DnaJ domain, PF01556: DnaJ C terminal
region, PF00684: DnaJ central domain (4 repeats);
identical to cDNA DnaJ homolog AtJ1 (atj) GI:564029
Length = 427
Score = 26.2 bits (55), Expect = 8.2
Identities = 16/52 (30%), Positives = 18/52 (34%)
Frame = +2
Query: 245 CFKCNRTGHFARDCKEEADRCYRCNGTGHIARECAQSPDEPSCYNCNKTGHI 400
C C+ GH C C G G + P SC C TGHI
Sbjct: 186 CDSCDGLGH---PSDAAMSICPTCRGVGRVTIP----PFTASCQTCKGTGHI 230
>At1g28210.1 68414.m03462 DNAJ heat shock protein, putative strong
similarity to mitochondrial DnaJ protein (AtJ1)
GI:564030 from [Arabidopsis thaliana]; contains Pfam
profiles PF00226: DnaJ domain, PF01556: DnaJ C terminal
region, PF00684: DnaJ central domain (4 repeats);
identical to cDNA DnaJ homolog AtJ1 (atj) GI:564029
Length = 408
Score = 26.2 bits (55), Expect = 8.2
Identities = 16/52 (30%), Positives = 18/52 (34%)
Frame = +2
Query: 245 CFKCNRTGHFARDCKEEADRCYRCNGTGHIARECAQSPDEPSCYNCNKTGHI 400
C C+ GH C C G G + P SC C TGHI
Sbjct: 186 CDSCDGLGH---PSDAAMSICPTCRGVGRVTIP----PFTASCQTCKGTGHI 230
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,459,730
Number of Sequences: 28952
Number of extensions: 135661
Number of successful extensions: 746
Number of sequences better than 10.0: 65
Number of HSP's better than 10.0 without gapping: 430
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 647
length of database: 12,070,560
effective HSP length: 74
effective length of database: 9,928,112
effective search space used: 585758608
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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