Samia BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_J11
         (246 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ372925-1|ABD17350.1|  596|Tribolium castaneum telomerase rever...    21   2.0  
AY293621-1|AAP46162.1|  392|Tribolium castaneum glass protein pr...    20   4.5  
AM292357-1|CAL23169.2|  355|Tribolium castaneum gustatory recept...    19   6.0  

>DQ372925-1|ABD17350.1|  596|Tribolium castaneum telomerase reverse
           transcriptase protein.
          Length = 596

 Score = 21.0 bits (42), Expect = 2.0
 Identities = 6/7 (85%), Positives = 7/7 (100%)
 Frame = +3

Query: 135 YWFCSPH 155
           Y+FCSPH
Sbjct: 345 YFFCSPH 351


>AY293621-1|AAP46162.1|  392|Tribolium castaneum glass protein
           protein.
          Length = 392

 Score = 19.8 bits (39), Expect = 4.5
 Identities = 6/17 (35%), Positives = 12/17 (70%)
 Frame = +2

Query: 20  VSLTMSGVTPASGFPVS 70
           +++TM G  P+S +P +
Sbjct: 153 MNMTMHGYHPSSSYPAN 169


>AM292357-1|CAL23169.2|  355|Tribolium castaneum gustatory receptor
           candidate 36 protein.
          Length = 355

 Score = 19.4 bits (38), Expect = 6.0
 Identities = 6/14 (42%), Positives = 9/14 (64%)
 Frame = -2

Query: 161 RDVRGAKPVIKKCR 120
           RD+R  +P+   CR
Sbjct: 6   RDIRFLRPIFAVCR 19


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 53,745
Number of Sequences: 336
Number of extensions: 827
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 122,585
effective HSP length: 46
effective length of database: 107,129
effective search space used:  3749515
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 36 (19.4 bits)