Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0001_J11
(246 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces... 110 2e-26
SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha 2|Schizosacchar... 64 2e-12
SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|ch... 64 3e-12
SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|... 51 2e-08
SPCC1223.13 |cbf12||CBF1/Su|Schizosaccharomyces pombe|chr 3|||Ma... 27 0.26
SPBC16E9.14c |||membrane transporter|Schizosaccharomyces pombe|c... 26 0.60
SPBC119.07 |ppk19||serine/threonine protein kinase Ppk19|Schizos... 25 1.4
SPAC869.07c |mel1||alpha-galactosidase |Schizosaccharomyces pomb... 25 1.8
SPCC1281.01 |ags1|mok1, SPCC338.01c, SPCC17A7.01|alpha-1,4-gluca... 25 1.8
SPAPB17E12.07c |sen2||tRNA-splicing endonuclease subunit Sen2|Sc... 24 2.4
SPAC1039.06 |||alanine racemase |Schizosaccharomyces pombe|chr 1... 23 4.3
SPBC19F5.03 |||inositol polyphosphate phosphatase |Schizosacchar... 23 4.3
SPBC2A9.07c |||zf-PARP-type zinc finger protein|Schizosaccharomy... 23 7.4
SPBC428.20c |alp6|SPBC902.01c|gamma tubulin complex Spc98/GCP3 s... 23 7.4
SPBC1685.06 |cid11||poly|Schizosaccharomyces pombe|chr 2|||Manual 22 9.8
>SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 448
Score = 110 bits (265), Expect = 2e-26
Identities = 49/67 (73%), Positives = 57/67 (85%)
Frame = +1
Query: 46 TCLRFPGQLNADLRKLAVNMVPFPRLHFFITGFAPLTSRGSQQYRALTVPELTQQMFDAK 225
T RFPG+LN+DLRKLAVNMVPFPRLHFF+ GFAPL + GS ++A++VPELTQQMFDA
Sbjct: 238 TSFRFPGELNSDLRKLAVNMVPFPRLHFFMVGFAPLAAIGSSSFQAVSVPELTQQMFDAN 297
Query: 226 NMMAACD 246
NMM A D
Sbjct: 298 NMMVAAD 304
>SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha
2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 449
Score = 64.5 bits (150), Expect = 2e-12
Identities = 27/65 (41%), Positives = 39/65 (60%)
Frame = +1
Query: 52 LRFPGQLNADLRKLAVNMVPFPRLHFFITGFAPLTSRGSQQYRALTVPELTQQMFDAKNM 231
LRF G LN DL + N+VP+PR+HF + +AP+ S + + +V E+T Q F+ N
Sbjct: 242 LRFEGSLNVDLAEFQTNLVPYPRIHFPLVTYAPIVSAAKAFHESNSVQEITNQCFEPYNQ 301
Query: 232 MAACD 246
M CD
Sbjct: 302 MVKCD 306
>SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 455
Score = 63.7 bits (148), Expect = 3e-12
Identities = 26/65 (40%), Positives = 39/65 (60%)
Frame = +1
Query: 52 LRFPGQLNADLRKLAVNMVPFPRLHFFITGFAPLTSRGSQQYRALTVPELTQQMFDAKNM 231
LRF G LN DL + N+VP+PR+HF + ++P+ S + + +V E+T Q F+ N
Sbjct: 246 LRFAGSLNVDLNEFQTNLVPYPRIHFPLVTYSPIVSAAKAFHESNSVQEITNQCFEPYNQ 305
Query: 232 MAACD 246
M CD
Sbjct: 306 MVKCD 310
>SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 446
Score = 51.2 bits (117), Expect = 2e-08
Identities = 22/68 (32%), Positives = 42/68 (61%), Gaps = 3/68 (4%)
Frame = +1
Query: 46 TCLRFPGQLNADLRKLAVNMVPFPRLHFFITGFAPLTSRGSQQYRAL---TVPELTQQMF 216
T LR+PG +N DL + +++P PR HF +T + P T++ ++ +A+ TV ++ +++
Sbjct: 241 TTLRYPGYMNNDLVSIIASLIPSPRCHFLLTSYTPFTNQQVEEAKAIRKTTVLDVMRRLL 300
Query: 217 DAKNMMAA 240
KN M +
Sbjct: 301 LPKNQMVS 308
>SPCC1223.13 |cbf12||CBF1/Su|Schizosaccharomyces pombe|chr
3|||Manual
Length = 963
Score = 27.5 bits (58), Expect = 0.26
Identities = 14/42 (33%), Positives = 23/42 (54%)
Frame = -1
Query: 126 VQTWEWHHVHCQLTEIGIQLTGKPEAGVTPDMVSDTRSSCRI 1
VQ W + C++ I KP+ + PD++SD+R S R+
Sbjct: 878 VQIW-MAYTRCEVKSIN---AFKPDTTLPPDIISDSRFSSRV 915
>SPBC16E9.14c |||membrane transporter|Schizosaccharomyces pombe|chr
2|||Manual
Length = 386
Score = 26.2 bits (55), Expect = 0.60
Identities = 8/10 (80%), Positives = 10/10 (100%)
Frame = +1
Query: 34 VWRYTCLRFP 63
VWR+TCLR+P
Sbjct: 148 VWRHTCLRYP 157
>SPBC119.07 |ppk19||serine/threonine protein kinase
Ppk19|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1706
Score = 25.0 bits (52), Expect = 1.4
Identities = 10/23 (43%), Positives = 15/23 (65%)
Frame = -1
Query: 147 SKTSNKKVQTWEWHHVHCQLTEI 79
+K +NK VQT EWH ++ +I
Sbjct: 1186 AKAANKIVQTHEWHPEGSRVAQI 1208
>SPAC869.07c |mel1||alpha-galactosidase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 436
Score = 24.6 bits (51), Expect = 1.8
Identities = 9/19 (47%), Positives = 11/19 (57%)
Frame = +1
Query: 19 GVADHVWRYTCLRFPGQLN 75
G+ +YTC FPG LN
Sbjct: 116 GMYSSAGKYTCAGFPGSLN 134
>SPCC1281.01 |ags1|mok1, SPCC338.01c, SPCC17A7.01|alpha-1,4-glucan
synthase Ags1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 2410
Score = 24.6 bits (51), Expect = 1.8
Identities = 8/21 (38%), Positives = 12/21 (57%)
Frame = -1
Query: 153 EGSKTSNKKVQTWEWHHVHCQ 91
+ S + + Q WE HH+H Q
Sbjct: 904 QASNWTGTRRQGWEGHHIHVQ 924
>SPAPB17E12.07c |sen2||tRNA-splicing endonuclease subunit
Sen2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 380
Score = 24.2 bits (50), Expect = 2.4
Identities = 7/14 (50%), Positives = 9/14 (64%)
Frame = -1
Query: 135 NKKVQTWEWHHVHC 94
NK+ +WH VHC
Sbjct: 302 NKQKYNMQWHEVHC 315
>SPAC1039.06 |||alanine racemase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 415
Score = 23.4 bits (48), Expect = 4.3
Identities = 14/36 (38%), Positives = 19/36 (52%), Gaps = 3/36 (8%)
Frame = -1
Query: 246 VTRRHHVLS---VEHLLRQLGDGERAVLLTAARREG 148
VT R HV + +E L QLGDG ++ + EG
Sbjct: 61 VTFRAHVKTHKTIEGTLLQLGDGRTKAVVVSTLMEG 96
>SPBC19F5.03 |||inositol polyphosphate phosphatase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 598
Score = 23.4 bits (48), Expect = 4.3
Identities = 13/30 (43%), Positives = 15/30 (50%)
Frame = +1
Query: 79 DLRKLAVNMVPFPRLHFFITGFAPLTSRGS 168
DLR L + VP+ L I F L SR S
Sbjct: 503 DLRPLTIRCVPYILLACLILFFMTLFSRSS 532
>SPBC2A9.07c |||zf-PARP-type zinc finger protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 274
Score = 22.6 bits (46), Expect = 7.4
Identities = 8/21 (38%), Positives = 11/21 (52%)
Frame = -1
Query: 156 REGSKTSNKKVQTWEWHHVHC 94
R G+ K Q+W+W H C
Sbjct: 50 RFGTFVDVGKFQSWKWRHWGC 70
>SPBC428.20c |alp6|SPBC902.01c|gamma tubulin complex Spc98/GCP3
subunit Alp6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 821
Score = 22.6 bits (46), Expect = 7.4
Identities = 7/13 (53%), Positives = 9/13 (69%)
Frame = -1
Query: 117 WEWHHVHCQLTEI 79
+EWH V C L E+
Sbjct: 648 FEWHFVSCHLAEM 660
>SPBC1685.06 |cid11||poly|Schizosaccharomyces pombe|chr 2|||Manual
Length = 478
Score = 22.2 bits (45), Expect = 9.8
Identities = 8/22 (36%), Positives = 12/22 (54%)
Frame = +1
Query: 43 YTCLRFPGQLNADLRKLAVNMV 108
+TC F GQ+ R+ N+V
Sbjct: 6 FTCCPFEGQMQQKKRRFDANLV 27
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 910,884
Number of Sequences: 5004
Number of extensions: 14352
Number of successful extensions: 48
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 46
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 48
length of database: 2,362,478
effective HSP length: 60
effective length of database: 2,062,238
effective search space used: 43306998
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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