BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0001_J11
(246 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_03_1086 - 27494238-27494914,27495471-27495740,27495986-27496379 130 2e-31
05_04_0306 + 20058640-20059159,20060406-20060819,20060921-200611... 130 2e-31
03_06_0176 + 32158462-32158855,32159960-32160229,32160328-32160998 130 2e-31
03_05_0575 + 25747813-25748206,25748567-25748614,25750296-257505... 130 2e-31
03_01_0034 + 318432-318825,318902-319851 130 2e-31
02_01_0499 + 3619909-3620302,3621123-3621392,3621788-3622467 130 2e-31
01_06_1060 + 34162161-34162554,34162613-34162675,34163262-341635... 130 2e-31
01_02_0004 - 10097759-10098438,10098973-10099242,10099956-10100349 130 2e-31
07_03_0994 + 23190344-23190456,23191367-23191581,23191663-231918... 72 7e-14
11_02_0058 + 7879859-7879951,7880844-7881078,7881165-7881535,788... 68 1e-12
03_05_0974 + 29324025-29324117,29325064-29325298,29325385-293257... 68 1e-12
03_02_0186 - 6243487-6243799,6243892-6244400,6244495-6244557,624... 66 3e-12
05_01_0412 - 3248405-3248458,3248533-3248637,3248950-3249078,324... 57 2e-09
10_08_0636 + 19478723-19478869,19479984-19480212,19480321-194804... 29 0.69
03_02_0897 - 12239375-12239458,12240035-12240116,12240213-122407... 27 2.1
12_01_1029 + 10547341-10548108 26 3.7
11_01_0740 + 6243517-6243526,6244822-6245323,6245415-6245496,624... 26 3.7
06_03_0501 + 21476715-21476785,21477045-21477786,21478097-214782... 26 3.7
05_01_0490 + 4083768-4083775,4083845-4084336,4084441-4084522,408... 26 3.7
03_05_0769 - 27579251-27579934 26 3.7
03_02_0848 + 11765607-11766143 26 3.7
01_05_0174 + 18919759-18920265,18920381-18920443,18921060-189217... 26 3.7
12_02_0410 + 18701258-18701327,18701398-18701630,18701782-187026... 26 4.9
11_06_0368 + 22756988-22758205 26 4.9
03_02_0711 - 10591738-10591772,10592260-10592447,10593730-105938... 26 4.9
02_05_0856 - 32272757-32273494,32273578-32273866,32273961-322743... 26 4.9
01_07_0371 - 43128880-43129968 26 4.9
01_03_0267 + 14433080-14433122,14434560-14434914,14435017-14436136 26 4.9
10_01_0006 + 74000-76441 25 6.4
06_01_0390 + 2802334-2802339,2802461-2802618,2802755-2802826,280... 25 6.4
04_04_0779 - 28023735-28024058,28024520-28024618,28024704-280249... 25 6.4
04_04_0630 - 26719136-26719150,26720065-26720134,26720438-26721912 25 6.4
>06_03_1086 - 27494238-27494914,27495471-27495740,27495986-27496379
Length = 446
Score = 130 bits (314), Expect = 2e-31
Identities = 58/66 (87%), Positives = 63/66 (95%)
Frame = +1
Query: 49 CLRFPGQLNADLRKLAVNMVPFPRLHFFITGFAPLTSRGSQQYRALTVPELTQQMFDAKN 228
CLRFPGQLN+DLRKLAVN++PFPRLHFF+ GFAPLTSRGSQQYRALTVPELTQQM+DAKN
Sbjct: 239 CLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYRALTVPELTQQMWDAKN 298
Query: 229 MMAACD 246
MM A D
Sbjct: 299 MMCAAD 304
>05_04_0306 +
20058640-20059159,20060406-20060819,20060921-20061190,
20062179-20062849
Length = 624
Score = 130 bits (314), Expect = 2e-31
Identities = 58/66 (87%), Positives = 63/66 (95%)
Frame = +1
Query: 49 CLRFPGQLNADLRKLAVNMVPFPRLHFFITGFAPLTSRGSQQYRALTVPELTQQMFDAKN 228
CLRFPGQLN+DLRKLAVN++PFPRLHFF+ GFAPLTSRGSQQYRALTVPELTQQM+DAKN
Sbjct: 419 CLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYRALTVPELTQQMWDAKN 478
Query: 229 MMAACD 246
MM A D
Sbjct: 479 MMCAAD 484
>03_06_0176 + 32158462-32158855,32159960-32160229,32160328-32160998
Length = 444
Score = 130 bits (314), Expect = 2e-31
Identities = 58/66 (87%), Positives = 63/66 (95%)
Frame = +1
Query: 49 CLRFPGQLNADLRKLAVNMVPFPRLHFFITGFAPLTSRGSQQYRALTVPELTQQMFDAKN 228
CLRFPGQLN+DLRKLAVN++PFPRLHFF+ GFAPLTSRGSQQYRALTVPELTQQM+DAKN
Sbjct: 239 CLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYRALTVPELTQQMWDAKN 298
Query: 229 MMAACD 246
MM A D
Sbjct: 299 MMCAAD 304
>03_05_0575 +
25747813-25748206,25748567-25748614,25750296-25750565,
25750658-25751334
Length = 462
Score = 130 bits (314), Expect = 2e-31
Identities = 58/66 (87%), Positives = 63/66 (95%)
Frame = +1
Query: 49 CLRFPGQLNADLRKLAVNMVPFPRLHFFITGFAPLTSRGSQQYRALTVPELTQQMFDAKN 228
CLRFPGQLN+DLRKLAVN++PFPRLHFF+ GFAPLTSRGSQQYRALTVPELTQQM+DAKN
Sbjct: 255 CLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYRALTVPELTQQMWDAKN 314
Query: 229 MMAACD 246
MM A D
Sbjct: 315 MMCAAD 320
>03_01_0034 + 318432-318825,318902-319851
Length = 447
Score = 130 bits (314), Expect = 2e-31
Identities = 58/66 (87%), Positives = 63/66 (95%)
Frame = +1
Query: 49 CLRFPGQLNADLRKLAVNMVPFPRLHFFITGFAPLTSRGSQQYRALTVPELTQQMFDAKN 228
CLRFPGQLN+DLRKLAVN++PFPRLHFF+ GFAPLTSRGSQQYRALTVPELTQQM+DAKN
Sbjct: 239 CLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYRALTVPELTQQMWDAKN 298
Query: 229 MMAACD 246
MM A D
Sbjct: 299 MMCAAD 304
>02_01_0499 + 3619909-3620302,3621123-3621392,3621788-3622467
Length = 447
Score = 130 bits (314), Expect = 2e-31
Identities = 58/66 (87%), Positives = 63/66 (95%)
Frame = +1
Query: 49 CLRFPGQLNADLRKLAVNMVPFPRLHFFITGFAPLTSRGSQQYRALTVPELTQQMFDAKN 228
CLRFPGQLN+DLRKLAVN++PFPRLHFF+ GFAPLTSRGSQQYRALTVPELTQQM+DAKN
Sbjct: 239 CLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYRALTVPELTQQMWDAKN 298
Query: 229 MMAACD 246
MM A D
Sbjct: 299 MMCAAD 304
>01_06_1060 +
34162161-34162554,34162613-34162675,34163262-34163531,
34163944-34164623
Length = 468
Score = 130 bits (314), Expect = 2e-31
Identities = 58/66 (87%), Positives = 63/66 (95%)
Frame = +1
Query: 49 CLRFPGQLNADLRKLAVNMVPFPRLHFFITGFAPLTSRGSQQYRALTVPELTQQMFDAKN 228
CLRFPGQLN+DLRKLAVN++PFPRLHFF+ GFAPLTSRGSQQYRALTVPELTQQM+DAKN
Sbjct: 260 CLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYRALTVPELTQQMWDAKN 319
Query: 229 MMAACD 246
MM A D
Sbjct: 320 MMCAAD 325
>01_02_0004 - 10097759-10098438,10098973-10099242,10099956-10100349
Length = 447
Score = 130 bits (314), Expect = 2e-31
Identities = 58/66 (87%), Positives = 63/66 (95%)
Frame = +1
Query: 49 CLRFPGQLNADLRKLAVNMVPFPRLHFFITGFAPLTSRGSQQYRALTVPELTQQMFDAKN 228
CLRFPGQLN+DLRKLAVN++PFPRLHFF+ GFAPLTSRGSQQYRALTVPELTQQM+DAKN
Sbjct: 239 CLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYRALTVPELTQQMWDAKN 298
Query: 229 MMAACD 246
MM A D
Sbjct: 299 MMCAAD 304
>07_03_0994 +
23190344-23190456,23191367-23191581,23191663-23191862,
23192420-23192928,23193048-23193363
Length = 450
Score = 71.7 bits (168), Expect = 7e-14
Identities = 28/67 (41%), Positives = 44/67 (65%)
Frame = +1
Query: 46 TCLRFPGQLNADLRKLAVNMVPFPRLHFFITGFAPLTSRGSQQYRALTVPELTQQMFDAK 225
T LRF G +N D+ + N+VP+PR+HF ++ +AP+ S + L+VPE+T +F+
Sbjct: 240 TSLRFDGAINVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAYHEQLSVPEITNAVFEPS 299
Query: 226 NMMAACD 246
+MMA CD
Sbjct: 300 SMMAKCD 306
>11_02_0058 +
7879859-7879951,7880844-7881078,7881165-7881535,
7881648-7882304
Length = 451
Score = 67.7 bits (158), Expect = 1e-12
Identities = 27/65 (41%), Positives = 41/65 (63%)
Frame = +1
Query: 52 LRFPGQLNADLRKLAVNMVPFPRLHFFITGFAPLTSRGSQQYRALTVPELTQQMFDAKNM 231
LRF G LN D+ + N+VP+PR+HF ++ +AP+ S + L+V E+T F+ +M
Sbjct: 242 LRFDGALNVDVNEFQTNLVPYPRIHFMLSSYAPVISAEKAYHEQLSVAEITNSAFEPSSM 301
Query: 232 MAACD 246
MA CD
Sbjct: 302 MAKCD 306
>03_05_0974 +
29324025-29324117,29325064-29325298,29325385-29325755,
29325864-29326520
Length = 451
Score = 67.7 bits (158), Expect = 1e-12
Identities = 27/65 (41%), Positives = 41/65 (63%)
Frame = +1
Query: 52 LRFPGQLNADLRKLAVNMVPFPRLHFFITGFAPLTSRGSQQYRALTVPELTQQMFDAKNM 231
LRF G LN D+ + N+VP+PR+HF ++ +AP+ S + L+V E+T F+ +M
Sbjct: 242 LRFDGALNVDVNEFQTNLVPYPRIHFMLSSYAPVISAEKAYHEQLSVAEITNSAFEPSSM 301
Query: 232 MAACD 246
MA CD
Sbjct: 302 MAKCD 306
>03_02_0186 -
6243487-6243799,6243892-6244400,6244495-6244557,
6245482-6245681,6246125-6246519,6246776-6246888
Length = 530
Score = 66.5 bits (155), Expect = 3e-12
Identities = 26/67 (38%), Positives = 43/67 (64%)
Frame = +1
Query: 46 TCLRFPGQLNADLRKLAVNMVPFPRLHFFITGFAPLTSRGSQQYRALTVPELTQQMFDAK 225
T LRF G +N D+ + N+VP+PR+HF ++ +AP+ S + +VPE+T +F+
Sbjct: 321 TSLRFDGAINVDITEFQTNLVPYPRIHFMLSSYAPIISVEKAFHEQHSVPEITNSVFEPA 380
Query: 226 NMMAACD 246
++MA CD
Sbjct: 381 SVMAKCD 387
>05_01_0412 -
3248405-3248458,3248533-3248637,3248950-3249078,
3249279-3249353,3249520-3249624,3249714-3249767,
3249970-3250370,3250583-3250694,3250886-3251086,
3251844-3251972
Length = 454
Score = 56.8 bits (131), Expect = 2e-09
Identities = 26/66 (39%), Positives = 40/66 (60%), Gaps = 1/66 (1%)
Frame = +1
Query: 46 TCLRFPGQLNADLRKLAVNMVPFPRLHFFITGFAPLT-SRGSQQYRALTVPELTQQMFDA 222
T LR+PG +N DL L +++P PR HF +TG+ PLT R R TV ++ +++
Sbjct: 241 TTLRYPGYMNNDLVGLLASLIPTPRCHFLMTGYTPLTVERQVNMIRKTTVLDVMRRLLQT 300
Query: 223 KNMMAA 240
KN+M +
Sbjct: 301 KNIMVS 306
>10_08_0636 +
19478723-19478869,19479984-19480212,19480321-19480414,
19480598-19480721,19480922-19481023,19481103-19481254,
19481353-19481446,19481642-19481827
Length = 375
Score = 28.7 bits (61), Expect = 0.69
Identities = 13/46 (28%), Positives = 23/46 (50%)
Frame = +1
Query: 25 ADHVWRYTCLRFPGQLNADLRKLAVNMVPFPRLHFFITGFAPLTSR 162
A + WR T +F + L +L ++ + +LH+ +APL R
Sbjct: 141 AAYPWRLTSGQFVSACKSSLERLQLDRLGIGQLHWSTANYAPLQER 186
>03_02_0897 -
12239375-12239458,12240035-12240116,12240213-12240714,
12241150-12241303,12241458-12241629,12242237-12242443,
12242926-12243323
Length = 532
Score = 27.1 bits (57), Expect = 2.1
Identities = 14/42 (33%), Positives = 18/42 (42%)
Frame = -2
Query: 128 KCRRGNGTMFTASLRRSAFN*PGNLRQV*RQTWSATPGPRAE 3
+CR N +LRR+ F PG R + W T R E
Sbjct: 446 RCRDANAAHAQEALRRAKFKFPGRQRVIFSAKWGFTRFKRDE 487
>12_01_1029 + 10547341-10548108
Length = 255
Score = 26.2 bits (55), Expect = 3.7
Identities = 13/44 (29%), Positives = 21/44 (47%)
Frame = -1
Query: 177 VLLTAARREGSKTSNKKVQTWEWHHVHCQLTEIGIQLTGKPEAG 46
V+ T+A +G++ + ++W HH CQ L GK G
Sbjct: 157 VVATSAGAQGTRQRRAEAESWRQHH-GCQRGGTSGGLRGKQRVG 199
>11_01_0740 +
6243517-6243526,6244822-6245323,6245415-6245496,
6245741-6245821
Length = 224
Score = 26.2 bits (55), Expect = 3.7
Identities = 12/42 (28%), Positives = 19/42 (45%)
Frame = -2
Query: 128 KCRRGNGTMFTASLRRSAFN*PGNLRQV*RQTWSATPGPRAE 3
+C+ N +LRR+ F PG + + + W T R E
Sbjct: 139 RCKESNAKHAEEALRRAKFKFPGRQKIIHSRKWGFTKFTREE 180
>06_03_0501 +
21476715-21476785,21477045-21477786,21478097-21478246,
21478350-21478589,21479968-21480048,21480144-21480185,
21480953-21481033,21481271-21481368,21482574-21482667,
21482733-21482861,21483881-21483931,21484023-21484049,
21484280-21484387,21484956-21485201
Length = 719
Score = 26.2 bits (55), Expect = 3.7
Identities = 9/17 (52%), Positives = 12/17 (70%)
Frame = -1
Query: 237 RHHVLSVEHLLRQLGDG 187
RHHV++ EH + LG G
Sbjct: 584 RHHVMNTEHTIISLGSG 600
>05_01_0490 +
4083768-4083775,4083845-4084336,4084441-4084522,
4086671-4087357,4087555-4087813,4088435-4088558,
4089474-4089564
Length = 580
Score = 26.2 bits (55), Expect = 3.7
Identities = 12/42 (28%), Positives = 20/42 (47%)
Frame = -2
Query: 128 KCRRGNGTMFTASLRRSAFN*PGNLRQV*RQTWSATPGPRAE 3
+C+ N + +LRR+ F PG + + + W T R E
Sbjct: 135 RCKPNNAVHASEALRRAKFKFPGRQKIIESRKWGFTKFSRDE 176
>03_05_0769 - 27579251-27579934
Length = 227
Score = 26.2 bits (55), Expect = 3.7
Identities = 12/35 (34%), Positives = 19/35 (54%)
Frame = -1
Query: 105 HVHCQLTEIGIQLTGKPEAGVTPDMVSDTRSSCRI 1
HVH + TE+GI L G+ G+ + + R R+
Sbjct: 114 HVHPRATEVGIVLRGELLVGIIGSLDTGNRYYSRV 148
>03_02_0848 + 11765607-11766143
Length = 178
Score = 26.2 bits (55), Expect = 3.7
Identities = 12/28 (42%), Positives = 14/28 (50%)
Frame = +3
Query: 30 PCLALHLPQVSRSVECRSP*AGSEHGAI 113
PCL L S+EC + SEHG I
Sbjct: 51 PCLETDLGSKKASLECSTDDDSSEHGGI 78
>01_05_0174 +
18919759-18920265,18920381-18920443,18921060-18921761,
18922934-18923068,18923391-18923474,18924095-18924151,
18924290-18924376,18924963-18925205
Length = 625
Score = 26.2 bits (55), Expect = 3.7
Identities = 14/46 (30%), Positives = 22/46 (47%)
Frame = -1
Query: 210 LLRQLGDGERAVLLTAARREGSKTSNKKVQTWEWHHVHCQLTEIGI 73
+L + E V LTAA R ++K+Q + V C E+G+
Sbjct: 487 VLLTMSPDELKVGLTAAERTSEPEESRKLQMTDARCVRCAEKEVGV 532
>12_02_0410 +
18701258-18701327,18701398-18701630,18701782-18702639,
18703006-18703865,18704285-18704395,18704486-18704567,
18704643-18704735,18704795-18704989
Length = 833
Score = 25.8 bits (54), Expect = 4.9
Identities = 10/28 (35%), Positives = 14/28 (50%)
Frame = -1
Query: 135 NKKVQTWEWHHVHCQLTEIGIQLTGKPE 52
NK+ + W W Q+TE G L P+
Sbjct: 308 NKRTRNWVWERTSGQVTEEGEMLLDCPD 335
>11_06_0368 + 22756988-22758205
Length = 405
Score = 25.8 bits (54), Expect = 4.9
Identities = 16/53 (30%), Positives = 23/53 (43%)
Frame = -1
Query: 207 LRQLGDGERAVLLTAARREGSKTSNKKVQTWEWHHVHCQLTEIGIQLTGKPEA 49
L + DGE LL R + + TW HV+C L +Q++ K A
Sbjct: 226 LTEFRDGETLRLLPRCRHAFHRGC---IDTWLRAHVNCPLCRAPVQISDKSAA 275
>03_02_0711 -
10591738-10591772,10592260-10592447,10593730-10593872,
10593973-10594098,10594187-10594294,10594401-10594618,
10594719-10595208
Length = 435
Score = 25.8 bits (54), Expect = 4.9
Identities = 18/64 (28%), Positives = 30/64 (46%)
Frame = +1
Query: 49 CLRFPGQLNADLRKLAVNMVPFPRLHFFITGFAPLTSRGSQQYRALTVPELTQQMFDAKN 228
CLR PG ++ AV +P R+ ++GF + G + L + Q+FD N
Sbjct: 56 CLRVPGDPSSAFSVFAVRALPPCRVSGLVSGFR--DADGVSGF-VLVLGSAVWQVFDGHN 112
Query: 229 MMAA 240
++A
Sbjct: 113 GVSA 116
>02_05_0856 -
32272757-32273494,32273578-32273866,32273961-32274312,
32275232-32275850
Length = 665
Score = 25.8 bits (54), Expect = 4.9
Identities = 10/17 (58%), Positives = 12/17 (70%)
Frame = -1
Query: 63 GKPEAGVTPDMVSDTRS 13
G P AG+ PD + DTRS
Sbjct: 287 GNPLAGIDPDEIVDTRS 303
>01_07_0371 - 43128880-43129968
Length = 362
Score = 25.8 bits (54), Expect = 4.9
Identities = 11/29 (37%), Positives = 15/29 (51%)
Frame = -1
Query: 126 VQTWEWHHVHCQLTEIGIQLTGKPEAGVT 40
V TW WH++H TE+ + G G T
Sbjct: 97 VVTW-WHNLHAATTELVVLFLGDTSKGHT 124
>01_03_0267 + 14433080-14433122,14434560-14434914,14435017-14436136
Length = 505
Score = 25.8 bits (54), Expect = 4.9
Identities = 10/17 (58%), Positives = 12/17 (70%)
Frame = -1
Query: 63 GKPEAGVTPDMVSDTRS 13
G P AG+ PD + DTRS
Sbjct: 95 GNPLAGIDPDEIVDTRS 111
>10_01_0006 + 74000-76441
Length = 813
Score = 25.4 bits (53), Expect = 6.4
Identities = 9/27 (33%), Positives = 16/27 (59%)
Frame = -1
Query: 84 EIGIQLTGKPEAGVTPDMVSDTRSSCR 4
+ G+ + GK +TP ++D +S CR
Sbjct: 335 DTGVSVPGKYMTSLTPQNLADCQSKCR 361
>06_01_0390 +
2802334-2802339,2802461-2802618,2802755-2802826,
2802967-2803114,2803234-2803503,2803741-2803904,
2804184-2804236,2804302-2804496,2804597-2804694,
2804787-2804891
Length = 422
Score = 25.4 bits (53), Expect = 6.4
Identities = 14/57 (24%), Positives = 27/57 (47%)
Frame = -1
Query: 231 HVLSVEHLLRQLGDGERAVLLTAARREGSKTSNKKVQTWEWHHVHCQLTEIGIQLTG 61
H++++E+ DG L A +E +++ K T E+H + + G+Q G
Sbjct: 310 HIVNMEYCSPISSDGPHFPLQAARAKEAAQSRPNKENTEEYHEMMEEEMIHGLQRVG 366
>04_04_0779 -
28023735-28024058,28024520-28024618,28024704-28024940,
28025227-28025334,28025427-28025486,28025813-28025888,
28025984-28026144,28026374-28026436,28026543-28026630,
28026872-28027612,28027695-28028239
Length = 833
Score = 25.4 bits (53), Expect = 6.4
Identities = 11/34 (32%), Positives = 17/34 (50%)
Frame = -2
Query: 164 PRDVRGAKPVIKKCRRGNGTMFTASLRRSAFN*P 63
P D +G+ + CRRGN + S R + + P
Sbjct: 31 PNDQKGSTKSKRSCRRGNDSSVEKSCRSTTVSRP 64
>04_04_0630 - 26719136-26719150,26720065-26720134,26720438-26721912
Length = 519
Score = 25.4 bits (53), Expect = 6.4
Identities = 11/26 (42%), Positives = 14/26 (53%)
Frame = +3
Query: 51 PQVSRSVECRSP*AGSEHGAIPTSAL 128
P SR + C SP + H + PTS L
Sbjct: 143 PIDSRRISCASPLCSAAHSSAPTSDL 168
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,801,399
Number of Sequences: 37544
Number of extensions: 115481
Number of successful extensions: 364
Number of sequences better than 10.0: 32
Number of HSP's better than 10.0 without gapping: 355
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 364
length of database: 14,793,348
effective HSP length: 60
effective length of database: 12,540,708
effective search space used: 263354868
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -