Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0001_J11
(246 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z46240-1|CAA86310.1| 444|Caenorhabditis elegans Hypothetical pr... 140 9e-35
X15242-1|CAA33320.1| 441|Caenorhabditis elegans beta-tubulin pr... 135 4e-33
U70844-1|AAB09092.1| 441|Caenorhabditis elegans Mechanosensory ... 135 4e-33
Z92803-10|CAB07246.1| 449|Caenorhabditis elegans Hypothetical p... 131 7e-32
Z77131-2|CAB00853.4| 444|Caenorhabditis elegans Hypothetical pr... 131 7e-32
Z35597-5|CAA84648.1| 450|Caenorhabditis elegans Hypothetical pr... 131 7e-32
U40420-4|AAA81432.2| 456|Caenorhabditis elegans Tubulin, alpha ... 67 1e-12
Z99709-10|CAB16856.1| 448|Caenorhabditis elegans Hypothetical p... 65 5e-12
Z81070-8|CAB03001.1| 449|Caenorhabditis elegans Hypothetical pr... 65 5e-12
D16439-1|BAA03909.1| 449|Caenorhabditis elegans alpha-1 tubulin... 65 5e-12
D14965-1|BAA03610.1| 448|Caenorhabditis elegans alpha-2 tubulin... 65 5e-12
Z37092-12|CAA85463.1| 448|Caenorhabditis elegans Hypothetical p... 65 7e-12
AL023832-2|CAA19476.1| 448|Caenorhabditis elegans Hypothetical ... 65 7e-12
Z81134-1|CAB03447.1| 444|Caenorhabditis elegans Hypothetical pr... 64 1e-11
U65429-1|AAB48241.1| 450|Caenorhabditis elegans alpha-tubulin M... 64 2e-11
D21134-1|BAA22203.1| 449|Caenorhabditis elegans alpha-3 tubulin... 64 2e-11
AF003387-1|AAB54263.2| 450|Caenorhabditis elegans Mechanosensor... 64 2e-11
AB017190-1|BAA32600.1| 450|Caenorhabditis elegans Alpha tubulin... 64 2e-11
Z78200-11|CAB01587.2| 426|Caenorhabditis elegans Hypothetical p... 63 2e-11
Z78198-13|CAB01575.2| 426|Caenorhabditis elegans Hypothetical p... 63 2e-11
Z37140-7|CAA85497.2| 452|Caenorhabditis elegans Hypothetical pr... 63 2e-11
Z78062-1|CAB01495.1| 447|Caenorhabditis elegans Hypothetical pr... 61 1e-10
Z81523-9|CAB04246.2| 464|Caenorhabditis elegans Hypothetical pr... 59 5e-10
AB017191-1|BAA32601.1| 435|Caenorhabditis elegans alpha tubulin... 59 5e-10
Z22179-11|CAA80164.1| 444|Caenorhabditis elegans Hypothetical p... 29 0.33
AF287259-1|AAG24513.1| 444|Caenorhabditis elegans gamma-tubulin... 29 0.33
Z49937-6|CAA90185.2| 453|Caenorhabditis elegans Hypothetical pr... 27 1.3
U39999-14|ABF71722.1| 1483|Caenorhabditis elegans Hypothetical p... 26 3.1
U28733-1|AAA68302.2| 982|Caenorhabditis elegans Patched related... 26 3.1
U00066-4|AAM54165.2| 75|Caenorhabditis elegans Hypothetical pr... 26 3.1
AM773423-1|CAO78927.1| 1473|Caenorhabditis elegans AGRin (synapt... 26 3.1
AF022975-3|AAB70674.1| 548|Caenorhabditis elegans Hypothetical ... 26 3.1
Z74476-6|CAA98967.1| 1139|Caenorhabditis elegans Hypothetical pr... 25 5.4
Z74473-6|CAA98951.1| 1139|Caenorhabditis elegans Hypothetical pr... 25 5.4
U42834-4|AAA83584.1| 2229|Caenorhabditis elegans Hypothetical pr... 25 5.4
U20168-1|AAA66364.1| 1139|Caenorhabditis elegans Lin-25 protein ... 25 5.4
U13643-6|AAL56620.1| 180|Caenorhabditis elegans Hypothetical pr... 25 5.4
Z80215-8|CAB02275.1| 381|Caenorhabditis elegans Hypothetical pr... 25 9.4
U28928-8|AAA68340.1| 661|Caenorhabditis elegans Peroxisomal mem... 25 9.4
AL032627-17|CAA21550.1| 103|Caenorhabditis elegans Hypothetical... 25 9.4
AF016446-10|AAC24161.1| 1050|Caenorhabditis elegans Hypothetical... 25 9.4
AC006832-3|AAF39997.1| 176|Caenorhabditis elegans Hypothetical ... 25 9.4
>Z46240-1|CAA86310.1| 444|Caenorhabditis elegans Hypothetical
protein B0272.1 protein.
Length = 444
Score = 140 bits (340), Expect = 9e-35
Identities = 64/67 (95%), Positives = 66/67 (98%)
Frame = +1
Query: 46 TCLRFPGQLNADLRKLAVNMVPFPRLHFFITGFAPLTSRGSQQYRALTVPELTQQMFDAK 225
TCLRFPGQLNADLRKLAVNMVPFPRLHFF+ GFAPLTSRGSQQYR+LTVPELTQQMFDAK
Sbjct: 238 TCLRFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRSLTVPELTQQMFDAK 297
Query: 226 NMMAACD 246
NMMAACD
Sbjct: 298 NMMAACD 304
Score = 24.6 bits (51), Expect = 9.4
Identities = 11/16 (68%), Positives = 12/16 (75%)
Frame = +2
Query: 17 LVSLTMSGVTPASGFP 64
LVS+TMSGVT FP
Sbjct: 228 LVSMTMSGVTTCLRFP 243
>X15242-1|CAA33320.1| 441|Caenorhabditis elegans beta-tubulin
protein.
Length = 441
Score = 135 bits (326), Expect = 4e-33
Identities = 61/67 (91%), Positives = 64/67 (95%)
Frame = +1
Query: 46 TCLRFPGQLNADLRKLAVNMVPFPRLHFFITGFAPLTSRGSQQYRALTVPELTQQMFDAK 225
TCLRFPGQLNADLRKLAVNMVPFPRLHFF+ GFAPLTSR +QQYRA+TVPELTQQ FDAK
Sbjct: 238 TCLRFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRSNQQYRAITVPELTQQCFDAK 297
Query: 226 NMMAACD 246
NMMAACD
Sbjct: 298 NMMAACD 304
>U70844-1|AAB09092.1| 441|Caenorhabditis elegans Mechanosensory
abnormality protein7 protein.
Length = 441
Score = 135 bits (326), Expect = 4e-33
Identities = 61/67 (91%), Positives = 64/67 (95%)
Frame = +1
Query: 46 TCLRFPGQLNADLRKLAVNMVPFPRLHFFITGFAPLTSRGSQQYRALTVPELTQQMFDAK 225
TCLRFPGQLNADLRKLAVNMVPFPRLHFF+ GFAPLTSR +QQYRA+TVPELTQQ FDAK
Sbjct: 238 TCLRFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRSNQQYRAITVPELTQQCFDAK 297
Query: 226 NMMAACD 246
NMMAACD
Sbjct: 298 NMMAACD 304
>Z92803-10|CAB07246.1| 449|Caenorhabditis elegans Hypothetical
protein K01G5.7 protein.
Length = 449
Score = 131 bits (316), Expect = 7e-32
Identities = 59/67 (88%), Positives = 64/67 (95%)
Frame = +1
Query: 46 TCLRFPGQLNADLRKLAVNMVPFPRLHFFITGFAPLTSRGSQQYRALTVPELTQQMFDAK 225
TCLRFPGQLNADLRKLAVNMVPFPRLHFF+ GFAPL+++G+Q YRALTV ELTQQMFDAK
Sbjct: 238 TCLRFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLSAKGAQAYRALTVAELTQQMFDAK 297
Query: 226 NMMAACD 246
NMMAACD
Sbjct: 298 NMMAACD 304
Score = 25.4 bits (53), Expect = 5.4
Identities = 12/16 (75%), Positives = 12/16 (75%)
Frame = +2
Query: 17 LVSLTMSGVTPASGFP 64
LVSLTMSGVT FP
Sbjct: 228 LVSLTMSGVTTCLRFP 243
>Z77131-2|CAB00853.4| 444|Caenorhabditis elegans Hypothetical
protein C54C6.2 protein.
Length = 444
Score = 131 bits (316), Expect = 7e-32
Identities = 59/67 (88%), Positives = 64/67 (95%)
Frame = +1
Query: 46 TCLRFPGQLNADLRKLAVNMVPFPRLHFFITGFAPLTSRGSQQYRALTVPELTQQMFDAK 225
TCLRFPGQLNADLRKLAVNMVPFPRLHFF+ GFAPL+++G+Q YRALTV ELTQQMFDAK
Sbjct: 238 TCLRFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLSAKGAQAYRALTVAELTQQMFDAK 297
Query: 226 NMMAACD 246
NMMAACD
Sbjct: 298 NMMAACD 304
>Z35597-5|CAA84648.1| 450|Caenorhabditis elegans Hypothetical
protein C36E8.5 protein.
Length = 450
Score = 131 bits (316), Expect = 7e-32
Identities = 59/67 (88%), Positives = 64/67 (95%)
Frame = +1
Query: 46 TCLRFPGQLNADLRKLAVNMVPFPRLHFFITGFAPLTSRGSQQYRALTVPELTQQMFDAK 225
TCLRFPGQLNADLRKLAVNMVPFPRLHFF+ GFAPL+++G+Q YRALTV ELTQQMFDAK
Sbjct: 238 TCLRFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLSAKGTQAYRALTVAELTQQMFDAK 297
Query: 226 NMMAACD 246
NMMAACD
Sbjct: 298 NMMAACD 304
Score = 25.4 bits (53), Expect = 5.4
Identities = 12/16 (75%), Positives = 12/16 (75%)
Frame = +2
Query: 17 LVSLTMSGVTPASGFP 64
LVSLTMSGVT FP
Sbjct: 228 LVSLTMSGVTTCLRFP 243
>U40420-4|AAA81432.2| 456|Caenorhabditis elegans Tubulin, alpha
protein 9 protein.
Length = 456
Score = 67.3 bits (157), Expect = 1e-12
Identities = 29/65 (44%), Positives = 40/65 (61%)
Frame = +1
Query: 52 LRFPGQLNADLRKLAVNMVPFPRLHFFITGFAPLTSRGSQQYRALTVPELTQQMFDAKNM 231
LRF G LN DL + N+VP+PR+HF +T +AP+ S + +TV E+TQQ F+
Sbjct: 247 LRFDGALNVDLTEFQTNLVPYPRIHFPLTTYAPIISAEKAYHEQMTVAEITQQCFEPGAQ 306
Query: 232 MAACD 246
M CD
Sbjct: 307 MVKCD 311
>Z99709-10|CAB16856.1| 448|Caenorhabditis elegans Hypothetical
protein C47B2.3 protein.
Length = 448
Score = 65.3 bits (152), Expect = 5e-12
Identities = 27/65 (41%), Positives = 38/65 (58%)
Frame = +1
Query: 52 LRFPGQLNADLRKLAVNMVPFPRLHFFITGFAPLTSRGSQQYRALTVPELTQQMFDAKNM 231
LRF G LN DL + N+VP+PR+HF + + PL S + AL+V ++T F+ N
Sbjct: 240 LRFDGALNVDLNEFQTNLVPYPRIHFPLAAYTPLISAEKAYHEALSVSDITNSCFEPANQ 299
Query: 232 MAACD 246
M CD
Sbjct: 300 MVKCD 304
>Z81070-8|CAB03001.1| 449|Caenorhabditis elegans Hypothetical
protein F26E4.8 protein.
Length = 449
Score = 65.3 bits (152), Expect = 5e-12
Identities = 27/65 (41%), Positives = 38/65 (58%)
Frame = +1
Query: 52 LRFPGQLNADLRKLAVNMVPFPRLHFFITGFAPLTSRGSQQYRALTVPELTQQMFDAKNM 231
LRF G LN DL + N+VP+PR+HF + + PL S + AL+V ++T F+ N
Sbjct: 240 LRFDGALNVDLNEFQTNLVPYPRIHFPLAAYTPLISADKAYHEALSVNDITNSCFEPANQ 299
Query: 232 MAACD 246
M CD
Sbjct: 300 MVKCD 304
>D16439-1|BAA03909.1| 449|Caenorhabditis elegans alpha-1 tubulin
protein.
Length = 449
Score = 65.3 bits (152), Expect = 5e-12
Identities = 27/65 (41%), Positives = 38/65 (58%)
Frame = +1
Query: 52 LRFPGQLNADLRKLAVNMVPFPRLHFFITGFAPLTSRGSQQYRALTVPELTQQMFDAKNM 231
LRF G LN DL + N+VP+PR+HF + + PL S + AL+V ++T F+ N
Sbjct: 240 LRFDGALNVDLNEFQTNLVPYPRIHFPLAAYTPLISADKAYHEALSVNDITNSCFEPANQ 299
Query: 232 MAACD 246
M CD
Sbjct: 300 MVKCD 304
>D14965-1|BAA03610.1| 448|Caenorhabditis elegans alpha-2 tubulin
protein.
Length = 448
Score = 65.3 bits (152), Expect = 5e-12
Identities = 27/65 (41%), Positives = 38/65 (58%)
Frame = +1
Query: 52 LRFPGQLNADLRKLAVNMVPFPRLHFFITGFAPLTSRGSQQYRALTVPELTQQMFDAKNM 231
LRF G LN DL + N+VP+PR+HF + + PL S + AL+V ++T F+ N
Sbjct: 240 LRFDGALNVDLNEFQTNLVPYPRIHFPLAAYTPLISAEKAYHEALSVSDITNSCFEPANQ 299
Query: 232 MAACD 246
M CD
Sbjct: 300 MVKCD 304
>Z37092-12|CAA85463.1| 448|Caenorhabditis elegans Hypothetical
protein F44F4.11 protein.
Length = 448
Score = 64.9 bits (151), Expect = 7e-12
Identities = 27/65 (41%), Positives = 38/65 (58%)
Frame = +1
Query: 52 LRFPGQLNADLRKLAVNMVPFPRLHFFITGFAPLTSRGSQQYRALTVPELTQQMFDAKNM 231
LRF G LN DL + N+VP+PR+HF + + PL S + AL+V ++T F+ N
Sbjct: 240 LRFDGALNVDLNEFQTNLVPYPRIHFPLASYTPLISAEKAYHEALSVNDITNSCFEPANQ 299
Query: 232 MAACD 246
M CD
Sbjct: 300 MVKCD 304
>AL023832-2|CAA19476.1| 448|Caenorhabditis elegans Hypothetical
protein F44F4.11 protein.
Length = 448
Score = 64.9 bits (151), Expect = 7e-12
Identities = 27/65 (41%), Positives = 38/65 (58%)
Frame = +1
Query: 52 LRFPGQLNADLRKLAVNMVPFPRLHFFITGFAPLTSRGSQQYRALTVPELTQQMFDAKNM 231
LRF G LN DL + N+VP+PR+HF + + PL S + AL+V ++T F+ N
Sbjct: 240 LRFDGALNVDLNEFQTNLVPYPRIHFPLASYTPLISAEKAYHEALSVNDITNSCFEPANQ 299
Query: 232 MAACD 246
M CD
Sbjct: 300 MVKCD 304
>Z81134-1|CAB03447.1| 444|Caenorhabditis elegans Hypothetical
protein T28D6.2 protein.
Length = 444
Score = 64.1 bits (149), Expect = 1e-11
Identities = 29/65 (44%), Positives = 40/65 (61%)
Frame = +1
Query: 52 LRFPGQLNADLRKLAVNMVPFPRLHFFITGFAPLTSRGSQQYRALTVPELTQQMFDAKNM 231
LRF G LN DL + N+VP+PR+HF + + PL S S + L+V E+T+ F+A N
Sbjct: 239 LRFDGALNVDLNEFQTNLVPYPRIHFPLVAYNPLIS--SAHHEFLSVDEITKSCFEASNQ 296
Query: 232 MAACD 246
M CD
Sbjct: 297 MVKCD 301
>U65429-1|AAB48241.1| 450|Caenorhabditis elegans alpha-tubulin
MEC-12 protein.
Length = 450
Score = 63.7 bits (148), Expect = 2e-11
Identities = 27/65 (41%), Positives = 38/65 (58%)
Frame = +1
Query: 52 LRFPGQLNADLRKLAVNMVPFPRLHFFITGFAPLTSRGSQQYRALTVPELTQQMFDAKNM 231
LRF G LN DL + N+VP+PR+HF + F+P+ S + L+V E+T F+ N
Sbjct: 242 LRFDGALNVDLTEFQTNLVPYPRIHFPLATFSPVISAEKAYHEQLSVAEITNMCFEPHNQ 301
Query: 232 MAACD 246
M CD
Sbjct: 302 MVKCD 306
>D21134-1|BAA22203.1| 449|Caenorhabditis elegans alpha-3 tubulin
protein.
Length = 449
Score = 63.7 bits (148), Expect = 2e-11
Identities = 27/65 (41%), Positives = 38/65 (58%)
Frame = +1
Query: 52 LRFPGQLNADLRKLAVNMVPFPRLHFFITGFAPLTSRGSQQYRALTVPELTQQMFDAKNM 231
LRF G LN DL + N+VP+PR+HF + F+P+ S + L+V E+T F+ N
Sbjct: 241 LRFDGALNVDLTEFQTNLVPYPRIHFPLATFSPVISAEKAYHEQLSVAEITNMCFEPHNQ 300
Query: 232 MAACD 246
M CD
Sbjct: 301 MVKCD 305
>AF003387-1|AAB54263.2| 450|Caenorhabditis elegans Mechanosensory
abnormality protein12 protein.
Length = 450
Score = 63.7 bits (148), Expect = 2e-11
Identities = 27/65 (41%), Positives = 38/65 (58%)
Frame = +1
Query: 52 LRFPGQLNADLRKLAVNMVPFPRLHFFITGFAPLTSRGSQQYRALTVPELTQQMFDAKNM 231
LRF G LN DL + N+VP+PR+HF + F+P+ S + L+V E+T F+ N
Sbjct: 242 LRFDGALNVDLTEFQTNLVPYPRIHFPLATFSPVISAEKAYHEQLSVAEITNMCFEPHNQ 301
Query: 232 MAACD 246
M CD
Sbjct: 302 MVKCD 306
>AB017190-1|BAA32600.1| 450|Caenorhabditis elegans Alpha tubulin
(tba-3) protein.
Length = 450
Score = 63.7 bits (148), Expect = 2e-11
Identities = 27/65 (41%), Positives = 38/65 (58%)
Frame = +1
Query: 52 LRFPGQLNADLRKLAVNMVPFPRLHFFITGFAPLTSRGSQQYRALTVPELTQQMFDAKNM 231
LRF G LN DL + N+VP+PR+HF + F+P+ S + L+V E+T F+ N
Sbjct: 242 LRFDGALNVDLTEFQTNLVPYPRIHFPLATFSPVISAEKAYHEQLSVAEITNMCFEPHNQ 301
Query: 232 MAACD 246
M CD
Sbjct: 302 MVKCD 306
>Z78200-11|CAB01587.2| 426|Caenorhabditis elegans Hypothetical
protein T04H1.9 protein.
Length = 426
Score = 63.3 bits (147), Expect = 2e-11
Identities = 31/63 (49%), Positives = 41/63 (65%)
Frame = +1
Query: 46 TCLRFPGQLNADLRKLAVNMVPFPRLHFFITGFAPLTSRGSQQYRALTVPELTQQMFDAK 225
T RF G L D+RKL N PRLHFF+T FAP+ +G +A ++ +LTQQ+ DAK
Sbjct: 239 TFQRFKGNLKTDIRKL--NTAGSPRLHFFMTSFAPVYGKGIIDCQAFSISDLTQQVLDAK 296
Query: 226 NMM 234
N+M
Sbjct: 297 NIM 299
>Z78198-13|CAB01575.2| 426|Caenorhabditis elegans Hypothetical
protein T04H1.9 protein.
Length = 426
Score = 63.3 bits (147), Expect = 2e-11
Identities = 31/63 (49%), Positives = 41/63 (65%)
Frame = +1
Query: 46 TCLRFPGQLNADLRKLAVNMVPFPRLHFFITGFAPLTSRGSQQYRALTVPELTQQMFDAK 225
T RF G L D+RKL N PRLHFF+T FAP+ +G +A ++ +LTQQ+ DAK
Sbjct: 239 TFQRFKGNLKTDIRKL--NTAGSPRLHFFMTSFAPVYGKGIIDCQAFSISDLTQQVLDAK 296
Query: 226 NMM 234
N+M
Sbjct: 297 NIM 299
>Z37140-7|CAA85497.2| 452|Caenorhabditis elegans Hypothetical
protein ZK899.4 protein.
Length = 452
Score = 63.3 bits (147), Expect = 2e-11
Identities = 26/65 (40%), Positives = 38/65 (58%)
Frame = +1
Query: 52 LRFPGQLNADLRKLAVNMVPFPRLHFFITGFAPLTSRGSQQYRALTVPELTQQMFDAKNM 231
LRF G LN DL + N+VP+PR+HF + +AP+ S + L+V ++T F+ N
Sbjct: 245 LRFDGALNVDLNEFQTNLVPYPRIHFPLATYAPVISADRAHHEPLSVQDITHMCFEKANQ 304
Query: 232 MAACD 246
M CD
Sbjct: 305 MVKCD 309
>Z78062-1|CAB01495.1| 447|Caenorhabditis elegans Hypothetical
protein F16D3.1 protein.
Length = 447
Score = 60.9 bits (141), Expect = 1e-10
Identities = 26/65 (40%), Positives = 38/65 (58%)
Frame = +1
Query: 52 LRFPGQLNADLRKLAVNMVPFPRLHFFITGFAPLTSRGSQQYRALTVPELTQQMFDAKNM 231
LRF G LN DL + N+VP+PR+HF + +AP+ S + L+V E+T F+ +
Sbjct: 242 LRFDGALNVDLTEFQTNLVPYPRIHFPLVTYAPIISAEKAYHEQLSVSEITNVCFEPGSQ 301
Query: 232 MAACD 246
M CD
Sbjct: 302 MVKCD 306
>Z81523-9|CAB04246.2| 464|Caenorhabditis elegans Hypothetical
protein F32H2.9 protein.
Length = 464
Score = 58.8 bits (136), Expect = 5e-10
Identities = 26/65 (40%), Positives = 36/65 (55%)
Frame = +1
Query: 52 LRFPGQLNADLRKLAVNMVPFPRLHFFITGFAPLTSRGSQQYRALTVPELTQQMFDAKNM 231
LRF G LN DL + N+VP+PR+HF + +APL S + TV ++T F+
Sbjct: 248 LRFEGALNVDLTEFQTNLVPYPRIHFPLVTYAPLVSAERASHEQNTVSDMTHACFEPGYQ 307
Query: 232 MAACD 246
M CD
Sbjct: 308 MVKCD 312
>AB017191-1|BAA32601.1| 435|Caenorhabditis elegans alpha tubulin
(tba-6) protein.
Length = 435
Score = 58.8 bits (136), Expect = 5e-10
Identities = 26/65 (40%), Positives = 36/65 (55%)
Frame = +1
Query: 52 LRFPGQLNADLRKLAVNMVPFPRLHFFITGFAPLTSRGSQQYRALTVPELTQQMFDAKNM 231
LRF G LN DL + N+VP+PR+HF + +APL S + TV ++T F+
Sbjct: 220 LRFEGALNVDLTEFQTNLVPYPRIHFPLVTYAPLVSAERASHEQNTVSDMTHACFEPGYQ 279
Query: 232 MAACD 246
M CD
Sbjct: 280 MVKCD 284
>Z22179-11|CAA80164.1| 444|Caenorhabditis elegans Hypothetical
protein F58A4.8 protein.
Length = 444
Score = 29.5 bits (63), Expect = 0.33
Identities = 15/62 (24%), Positives = 30/62 (48%)
Frame = +1
Query: 55 RFPGQLNADLRKLAVNMVPFPRLHFFITGFAPLTSRGSQQYRALTVPELTQQMFDAKNMM 234
RF + +R L ++ PFP +HF + +P+ R +V ++T+ + +MM
Sbjct: 246 RFNSAMCPSIRYL--DLAPFPPMHFIQSAISPVVDPNENFTRKTSVADVTRFLLKPTSMM 303
Query: 235 AA 240
+
Sbjct: 304 VS 305
>AF287259-1|AAG24513.1| 444|Caenorhabditis elegans gamma-tubulin
protein.
Length = 444
Score = 29.5 bits (63), Expect = 0.33
Identities = 15/62 (24%), Positives = 30/62 (48%)
Frame = +1
Query: 55 RFPGQLNADLRKLAVNMVPFPRLHFFITGFAPLTSRGSQQYRALTVPELTQQMFDAKNMM 234
RF + +R L ++ PFP +HF + +P+ R +V ++T+ + +MM
Sbjct: 246 RFNSAMCPSIRYL--DLAPFPPMHFIQSAISPVVDPNENFTRKTSVADVTRFLLKPTSMM 303
Query: 235 AA 240
+
Sbjct: 304 VS 305
>Z49937-6|CAA90185.2| 453|Caenorhabditis elegans Hypothetical
protein F14F3.3 protein.
Length = 453
Score = 27.5 bits (58), Expect = 1.3
Identities = 11/31 (35%), Positives = 19/31 (61%)
Frame = -1
Query: 156 REGSKTSNKKVQTWEWHHVHCQLTEIGIQLT 64
R+G K N+ VQTW +VH ++ + ++ T
Sbjct: 312 RDGMKAWNRSVQTWLALYVHSRVKVMRVETT 342
>U39999-14|ABF71722.1| 1483|Caenorhabditis elegans Hypothetical
protein F41G3.12 protein.
Length = 1483
Score = 26.2 bits (55), Expect = 3.1
Identities = 9/26 (34%), Positives = 14/26 (53%)
Frame = -3
Query: 106 PCSLPAYGDRHSTDRET*GRCNARHG 29
PC A+G S +T G+C ++G
Sbjct: 789 PCGCSAFGSSRSDCEQTTGKCECKNG 814
>U28733-1|AAA68302.2| 982|Caenorhabditis elegans Patched related
family protein 6 protein.
Length = 982
Score = 26.2 bits (55), Expect = 3.1
Identities = 12/49 (24%), Positives = 24/49 (48%)
Frame = +1
Query: 22 VADHVWRYTCLRFPGQLNADLRKLAVNMVPFPRLHFFITGFAPLTSRGS 168
+A W T +++PG+ ++K + + + FIT F + S G+
Sbjct: 388 IAVAAWHNTEMKYPGRSPKVMKKRMIEAMSESAVAIFITSFTDVLSFGA 436
>U00066-4|AAM54165.2| 75|Caenorhabditis elegans Hypothetical
protein R12B2.7 protein.
Length = 75
Score = 26.2 bits (55), Expect = 3.1
Identities = 10/21 (47%), Positives = 14/21 (66%)
Frame = +1
Query: 70 LNADLRKLAVNMVPFPRLHFF 132
LN L L++N FP+LHF+
Sbjct: 41 LNDKLISLSINAFSFPKLHFY 61
>AM773423-1|CAO78927.1| 1473|Caenorhabditis elegans AGRin (synaptic
protein) homologfamily member protein.
Length = 1473
Score = 26.2 bits (55), Expect = 3.1
Identities = 9/26 (34%), Positives = 14/26 (53%)
Frame = -3
Query: 106 PCSLPAYGDRHSTDRET*GRCNARHG 29
PC A+G S +T G+C ++G
Sbjct: 722 PCGCSAFGSSRSDCEQTTGKCECKNG 747
>AF022975-3|AAB70674.1| 548|Caenorhabditis elegans Hypothetical
protein K09C6.8 protein.
Length = 548
Score = 26.2 bits (55), Expect = 3.1
Identities = 13/32 (40%), Positives = 16/32 (50%)
Frame = +1
Query: 7 ARGPGVADHVWRYTCLRFPGQLNADLRKLAVN 102
ARGP W Y C RF L++DL + N
Sbjct: 278 ARGPADDYESWFYICARFITLLSSDLGFIVQN 309
>Z74476-6|CAA98967.1| 1139|Caenorhabditis elegans Hypothetical
protein F56H9.5 protein.
Length = 1139
Score = 25.4 bits (53), Expect = 5.4
Identities = 11/33 (33%), Positives = 14/33 (42%)
Frame = -1
Query: 177 VLLTAARREGSKTSNKKVQTWEWHHVHCQLTEI 79
++ A + S KK WH VHC L I
Sbjct: 683 IIKVEAPKPDSPIKKKKDPDVTWHEVHCPLPRI 715
>Z74473-6|CAA98951.1| 1139|Caenorhabditis elegans Hypothetical
protein F56H9.5 protein.
Length = 1139
Score = 25.4 bits (53), Expect = 5.4
Identities = 11/33 (33%), Positives = 14/33 (42%)
Frame = -1
Query: 177 VLLTAARREGSKTSNKKVQTWEWHHVHCQLTEI 79
++ A + S KK WH VHC L I
Sbjct: 683 IIKVEAPKPDSPIKKKKDPDVTWHEVHCPLPRI 715
>U42834-4|AAA83584.1| 2229|Caenorhabditis elegans Hypothetical
protein F28B4.3 protein.
Length = 2229
Score = 25.4 bits (53), Expect = 5.4
Identities = 11/31 (35%), Positives = 14/31 (45%)
Frame = -2
Query: 215 NICCVSSGTVSARYC*LPRDVRGAKPVIKKC 123
NI C + GTVS C P G + +C
Sbjct: 870 NIVCYNGGTVSGGQCVCPPGYAGESCEVPRC 900
>U20168-1|AAA66364.1| 1139|Caenorhabditis elegans Lin-25 protein
protein.
Length = 1139
Score = 25.4 bits (53), Expect = 5.4
Identities = 11/33 (33%), Positives = 14/33 (42%)
Frame = -1
Query: 177 VLLTAARREGSKTSNKKVQTWEWHHVHCQLTEI 79
++ A + S KK WH VHC L I
Sbjct: 683 IIKVEAPKPDSPIKKKKDPDVTWHEVHCPLPRI 715
>U13643-6|AAL56620.1| 180|Caenorhabditis elegans Hypothetical
protein T07E3.6b protein.
Length = 180
Score = 25.4 bits (53), Expect = 5.4
Identities = 10/45 (22%), Positives = 21/45 (46%)
Frame = +1
Query: 43 YTCLRFPGQLNADLRKLAVNMVPFPRLHFFITGFAPLTSRGSQQY 177
+ L P LN ++ + ++M+ + ++ +PL R Q Y
Sbjct: 82 FPALPLPSSLNVNMNRFIISMIALLAVFCAVSTASPLLYRAPQMY 126
>Z80215-8|CAB02275.1| 381|Caenorhabditis elegans Hypothetical
protein C36B1.10 protein.
Length = 381
Score = 24.6 bits (51), Expect = 9.4
Identities = 13/31 (41%), Positives = 16/31 (51%)
Frame = -1
Query: 150 GSKTSNKKVQTWEWHHVHCQLTEIGIQLTGK 58
GSK K+ TW V +L + GI L GK
Sbjct: 201 GSKNYGCKIDTWSCGCVFGELLKGGIFLAGK 231
>U28928-8|AAA68340.1| 661|Caenorhabditis elegans Peroxisomal
membrane protein relatedprotein 2 protein.
Length = 661
Score = 24.6 bits (51), Expect = 9.4
Identities = 13/27 (48%), Positives = 17/27 (62%)
Frame = -2
Query: 158 DVRGAKPVIKKCRRGNGTMFTASLRRS 78
DV GA + + CR N T+FT S R+S
Sbjct: 606 DVEGA--MYRLCREKNITLFTVSHRKS 630
>AL032627-17|CAA21550.1| 103|Caenorhabditis elegans Hypothetical
protein Y41C4A.13 protein.
Length = 103
Score = 24.6 bits (51), Expect = 9.4
Identities = 10/31 (32%), Positives = 19/31 (61%)
Frame = +3
Query: 75 CRSP*AGSEHGAIPTSALFYYWFCSPHVSRQ 167
C P G++ G TS++F+YW C ++++
Sbjct: 40 CPVPLVGTKCG---TSSIFHYWKCCGELNKE 67
>AF016446-10|AAC24161.1| 1050|Caenorhabditis elegans Hypothetical
protein C02E7.1 protein.
Length = 1050
Score = 24.6 bits (51), Expect = 9.4
Identities = 12/32 (37%), Positives = 18/32 (56%)
Frame = -1
Query: 96 CQLTEIGIQLTGKPEAGVTPDMVSDTRSSCRI 1
CQ+ G++ T PE V D+V RS C++
Sbjct: 168 CQVIRDGVEQTLNPEELVVGDIVV-VRSGCKV 198
>AC006832-3|AAF39997.1| 176|Caenorhabditis elegans Hypothetical
protein ZK355.3 protein.
Length = 176
Score = 24.6 bits (51), Expect = 9.4
Identities = 11/27 (40%), Positives = 17/27 (62%), Gaps = 2/27 (7%)
Frame = -1
Query: 153 EGSKTSNKKVQTWEWHHV--HCQLTEI 79
+GSK+SN +V T+ H V HC + +
Sbjct: 118 QGSKSSNNQVATFADHQVQAHCDSSSV 144
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,395,500
Number of Sequences: 27780
Number of extensions: 89741
Number of successful extensions: 260
Number of sequences better than 10.0: 42
Number of HSP's better than 10.0 without gapping: 251
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 259
length of database: 12,740,198
effective HSP length: 61
effective length of database: 11,045,618
effective search space used: 220912360
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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