Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_J11
         (246 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.           23   0.74 
AF205594-1|AAQ13840.1|  156|Apis mellifera acid phosphatase prec...    21   1.7  
DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chlor...    21   3.0  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    20   3.9  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    20   3.9  
DQ244075-1|ABB36785.1|  548|Apis mellifera cytochrome P450 monoo...    19   6.9  

>DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.
          Length = 552

 Score = 22.6 bits (46), Expect = 0.74
 Identities = 13/34 (38%), Positives = 17/34 (50%), Gaps = 3/34 (8%)
 Frame = -1

Query: 192 DGERAVLLTAARREGSKTSNKKVQ---TWEWHHV 100
           DG    L T  +   SKT + K++    WEWH V
Sbjct: 208 DGIPVTLTTVPKH--SKTKSPKLRPYPNWEWHTV 239


>AF205594-1|AAQ13840.1|  156|Apis mellifera acid phosphatase
           precursor protein.
          Length = 156

 Score = 21.4 bits (43), Expect = 1.7
 Identities = 8/30 (26%), Positives = 17/30 (56%)
 Frame = -2

Query: 158 DVRGAKPVIKKCRRGNGTMFTASLRRSAFN 69
           ++  + P++KK   GN T+    +R  +F+
Sbjct: 116 NITNSTPLLKKLYGGNSTIIFLLIRFKSFS 145


>DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 383

 Score = 20.6 bits (41), Expect = 3.0
 Identities = 9/22 (40%), Positives = 13/22 (59%)
 Frame = +1

Query: 37  WRYTCLRFPGQLNADLRKLAVN 102
           WR + LR P  ++ D R L V+
Sbjct: 61  WRDSRLRLPENMSEDYRILDVD 82


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 20.2 bits (40), Expect = 3.9
 Identities = 17/52 (32%), Positives = 22/52 (42%)
 Frame = -2

Query: 242 HAAIMFLASNICCVSSGTVSARYC*LPRDVRGAKPVIKKCRRGNGTMFTASL 87
           +AA + LAS I   S+GT          D R A   ++    G  T   ASL
Sbjct: 12  NAAFLCLASTILSESAGTSCKWLSEGGNDTRSADCTLRVLDPGAITGLVASL 63


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 20.2 bits (40), Expect = 3.9
 Identities = 9/21 (42%), Positives = 12/21 (57%)
 Frame = +1

Query: 4   SARGPGVADHVWRYTCLRFPG 66
           +A GPG+A  V+    L  PG
Sbjct: 405 AASGPGLAFLVYPSAVLELPG 425


>DQ244075-1|ABB36785.1|  548|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 548

 Score = 19.4 bits (38), Expect = 6.9
 Identities = 8/23 (34%), Positives = 16/23 (69%)
 Frame = -1

Query: 189 GERAVLLTAARREGSKTSNKKVQ 121
           G+R ++  +A++  SKT+N  V+
Sbjct: 269 GKRNIIDNSAQKTESKTNNIVVE 291


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 63,312
Number of Sequences: 438
Number of extensions: 1127
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 47
effective length of database: 125,757
effective search space used:  4275738
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 37 (19.9 bits)