Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_J09
         (400 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1235.13 |ght6|meu12|hexose transporter Ght6 |Schizosaccharom...    28   0.46 
SPBC2G2.11 |||N-myristoyltransferase 1|Schizosaccharomyces pombe...    26   1.9  
SPAC1556.02c |sdh1||succinate dehydrogenase Sdh1|Schizosaccharom...    26   2.5  
SPAC8C9.14 |prr1||transcription factor Prr1|Schizosaccharomyces ...    26   2.5  
SPCC1753.02c |git3||G-protein coupled receptor Git3|Schizosaccha...    25   3.3  
SPAPB1A11.04c |||transcription factor |Schizosaccharomyces pombe...    25   3.3  
SPCC1020.11c |||DUF786 family protein|Schizosaccharomyces pombe|...    24   7.6  
SPBC11C11.08 |srp1||SR family protein Srp1|Schizosaccharomyces p...    24   10.0 

>SPCC1235.13 |ght6|meu12|hexose transporter Ght6
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 535

 Score = 28.3 bits (60), Expect = 0.46
 Identities = 12/36 (33%), Positives = 21/36 (58%)
 Frame = -3

Query: 257 GPELLGGMWGWIRFSLSRRLAEQVRTQPEHASSARA 150
           GP ++GG+W  I F +   + ++  T+P   S+ RA
Sbjct: 331 GPLIVGGVWQSICFFIYASVGDRALTRPNGTSNHRA 366


>SPBC2G2.11 |||N-myristoyltransferase 1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 466

 Score = 26.2 bits (55), Expect = 1.9
 Identities = 16/49 (32%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
 Frame = +1

Query: 232 HIPPNSSGPPIRL*CVVTVQPVSNLTPAYRGSRYDWARSFSWYQCR-WY 375
           H+PPN+  P +R   +  V  V +L   Y   R++ A  FS  + R W+
Sbjct: 265 HLPPNTQTPGLRPMELKDVPAVQSLLSQYM-ERFELAHLFSEEEVRHWF 312


>SPAC1556.02c |sdh1||succinate dehydrogenase
           Sdh1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 641

 Score = 25.8 bits (54), Expect = 2.5
 Identities = 10/24 (41%), Positives = 16/24 (66%)
 Frame = -2

Query: 279 DALEPDGRPRAVGGDVGVDSLQFV 208
           D LEP+   + +  D G+DSL+F+
Sbjct: 467 DTLEPNTPHKPLAADAGLDSLKFL 490


>SPAC8C9.14 |prr1||transcription factor Prr1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 539

 Score = 25.8 bits (54), Expect = 2.5
 Identities = 17/38 (44%), Positives = 22/38 (57%), Gaps = 6/38 (15%)
 Frame = +3

Query: 183 SYLLG-EAARQTEANP-----PPHPPQQLGAAHQALMR 278
           SYL   E + Q +ANP     P HP Q+L  A+QAL +
Sbjct: 179 SYLCDLEGSTQRQANPGAMFVPSHPLQELLNAYQALAK 216


>SPCC1753.02c |git3||G-protein coupled receptor
           Git3|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 466

 Score = 25.4 bits (53), Expect = 3.3
 Identities = 9/22 (40%), Positives = 12/22 (54%)
 Frame = +1

Query: 205 RDKLKRIHPHIPPNSSGPPIRL 270
           R  L  +HP++PP S   P  L
Sbjct: 280 RPLLSSVHPNLPPGSQSTPANL 301


>SPAPB1A11.04c |||transcription factor |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 697

 Score = 25.4 bits (53), Expect = 3.3
 Identities = 17/64 (26%), Positives = 28/64 (43%)
 Frame = +1

Query: 136 AYVRGARALLACSGCVRTCSARRRDKLKRIHPHIPPNSSGPPIRL*CVVTVQPVSNLTPA 315
           A +R  +  + CSG   +C A   +K++ I P  P      P       T+ P++ +   
Sbjct: 23  ACIRCRQKKIKCSGEKPSCQACSNNKVECIWPDRPNMRGKKPSS--AARTLSPLTGIVQP 80

Query: 316 YRGS 327
           Y GS
Sbjct: 81  YLGS 84


>SPCC1020.11c |||DUF786 family protein|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 102

 Score = 24.2 bits (50), Expect = 7.6
 Identities = 9/11 (81%), Positives = 10/11 (90%)
 Frame = +3

Query: 156 CAAGVLGLRSY 188
           CAAG+LGL SY
Sbjct: 19  CAAGILGLTSY 29


>SPBC11C11.08 |srp1||SR family protein Srp1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 275

 Score = 23.8 bits (49), Expect = 10.0
 Identities = 8/16 (50%), Positives = 12/16 (75%)
 Frame = -1

Query: 364 TDTRRRSAPNRNGNHD 317
           T+  ++SAPN NGN +
Sbjct: 207 TEVEQQSAPNSNGNEE 222


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,539,657
Number of Sequences: 5004
Number of extensions: 27757
Number of successful extensions: 81
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 77
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 81
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 134126124
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)