Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_J09
         (400 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_19450| Best HMM Match : GTP_EFTU (HMM E-Value=7.9e-08)              29   1.8  
SB_32955| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   3.2  
SB_31081| Best HMM Match : Herpes_UL3 (HMM E-Value=3.8)                27   4.3  
SB_30415| Best HMM Match : M (HMM E-Value=6.5e-05)                     27   4.3  
SB_39606| Best HMM Match : DUF164 (HMM E-Value=0.47)                   27   4.3  
SB_32010| Best HMM Match : Ada_Zn_binding (HMM E-Value=5.2)            27   5.6  
SB_20582| Best HMM Match : DAN (HMM E-Value=1.6)                       27   5.6  
SB_50933| Best HMM Match : Laminin_EGF (HMM E-Value=0.0069)            27   7.4  
SB_39051| Best HMM Match : Gal_Lectin (HMM E-Value=2.5e-21)            27   7.4  
SB_8553| Best HMM Match : No HMM Matches (HMM E-Value=.)               26   9.8  

>SB_19450| Best HMM Match : GTP_EFTU (HMM E-Value=7.9e-08)
          Length = 926

 Score = 28.7 bits (61), Expect = 1.8
 Identities = 15/44 (34%), Positives = 18/44 (40%)
 Frame = -2

Query: 330 TGTTIRGCKVRNRLDRHDALEPDGRPRAVGGDVGVDSLQFVSPP 199
           T TT      R R+ R  A +PD RP+   G        F  PP
Sbjct: 414 TETTTETVAERARVGRGSARQPDTRPKVYAGAATAPHPSFAPPP 457


>SB_32955| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 131

 Score = 27.9 bits (59), Expect = 3.2
 Identities = 12/26 (46%), Positives = 13/26 (50%)
 Frame = +3

Query: 207 RQTEANPPPHPPQQLGAAHQALMRRD 284
           R T   PPP PP Q G   Q+ M  D
Sbjct: 78  RLTPPQPPPQPPDQQGPEVQSQMEAD 103


>SB_31081| Best HMM Match : Herpes_UL3 (HMM E-Value=3.8)
          Length = 248

 Score = 27.5 bits (58), Expect = 4.3
 Identities = 8/14 (57%), Positives = 11/14 (78%)
 Frame = -1

Query: 253 PSCWGGCGGGFASV 212
           P+ WGGCGGG  ++
Sbjct: 33  PNLWGGCGGGVVTL 46


>SB_30415| Best HMM Match : M (HMM E-Value=6.5e-05)
          Length = 1312

 Score = 27.5 bits (58), Expect = 4.3
 Identities = 13/27 (48%), Positives = 16/27 (59%)
 Frame = -1

Query: 253 PSCWGGCGGGFASVCLAASPSRYERNP 173
           PS  GG     AS+C+AA P  Y+ NP
Sbjct: 404 PSQGGGLVPQDASMCMAAYPDFYQSNP 430


>SB_39606| Best HMM Match : DUF164 (HMM E-Value=0.47)
          Length = 626

 Score = 27.5 bits (58), Expect = 4.3
 Identities = 10/27 (37%), Positives = 17/27 (62%)
 Frame = -1

Query: 352 RRSAPNRNGNHDTRV*GSKPAGPSRRI 272
           R S+P+R G   +R+  S P  PS+++
Sbjct: 133 RSSSPSRRGGSPSRILNSSPLSPSKQV 159


>SB_32010| Best HMM Match : Ada_Zn_binding (HMM E-Value=5.2)
          Length = 607

 Score = 27.1 bits (57), Expect = 5.6
 Identities = 14/29 (48%), Positives = 16/29 (55%)
 Frame = -2

Query: 315 RGCKVRNRLDRHDALEPDGRPRAVGGDVG 229
           RGC  RNR  RH +  P  RP A G + G
Sbjct: 568 RGCAPRNRATRHTSGSP--RPEAQGHNEG 594


>SB_20582| Best HMM Match : DAN (HMM E-Value=1.6)
          Length = 264

 Score = 27.1 bits (57), Expect = 5.6
 Identities = 9/19 (47%), Positives = 14/19 (73%)
 Frame = +1

Query: 133 PAYVRGARALLACSGCVRT 189
           P Y  GAR+L +CS C+++
Sbjct: 76  PEYTTGARSLASCSNCLQS 94


>SB_50933| Best HMM Match : Laminin_EGF (HMM E-Value=0.0069)
          Length = 233

 Score = 26.6 bits (56), Expect = 7.4
 Identities = 12/25 (48%), Positives = 17/25 (68%)
 Frame = -1

Query: 250 SCWGGCGGGFASVCLAASPSRYERN 176
           SC+GGC GG A  C +A  S +E++
Sbjct: 71  SCFGGCHGGTAKDC-SACKSGWEQS 94


>SB_39051| Best HMM Match : Gal_Lectin (HMM E-Value=2.5e-21)
          Length = 1405

 Score = 26.6 bits (56), Expect = 7.4
 Identities = 12/45 (26%), Positives = 22/45 (48%)
 Frame = +1

Query: 184 RTCSARRRDKLKRIHPHIPPNSSGPPIRL*CVVTVQPVSNLTPAY 318
           +TC    R + +R  P  PP++  P ++    V  +P+S +   Y
Sbjct: 281 QTCITCHRSRRRRHRPQQPPHAQKPAVQ---TVESEPISQIAALY 322


>SB_8553| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 982

 Score = 26.2 bits (55), Expect = 9.8
 Identities = 11/35 (31%), Positives = 17/35 (48%)
 Frame = +3

Query: 222  NPPPHPPQQLGAAHQALMRRDGPAGFEPYTRVSWF 326
            NP  +    L  A  ++  ++G   F P T VSW+
Sbjct: 939  NPQEYDRDGLTQAQTSMGTQEGSYAFSPITSVSWY 973


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,793,353
Number of Sequences: 59808
Number of extensions: 265658
Number of successful extensions: 791
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 754
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 791
length of database: 16,821,457
effective HSP length: 75
effective length of database: 12,335,857
effective search space used: 703143849
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)