Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0001_J09
(400 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC006644-6|AAZ91358.1| 958|Caenorhabditis elegans Hypothetical ... 41 4e-04
AF077541-7|AAC64628.1| 197|Caenorhabditis elegans Hypothetical ... 38 0.004
Z81053-1|CAB02877.1| 385|Caenorhabditis elegans Hypothetical pr... 26 0.33
U55366-2|AAA97981.1| 156|Caenorhabditis elegans Hypothetical pr... 29 0.93
U58749-5|AAU05597.1| 1551|Caenorhabditis elegans Hypothetical pr... 28 2.8
U88170-4|AAB42245.2| 425|Caenorhabditis elegans Hypothetical pr... 27 3.7
Z50109-13|CAD44092.1| 1549|Caenorhabditis elegans Hypothetical p... 27 5.0
Z50109-12|CAD44091.1| 1583|Caenorhabditis elegans Hypothetical p... 27 5.0
Z50109-10|CAD89729.3| 1654|Caenorhabditis elegans Hypothetical p... 27 5.0
Z47810-5|CAD44133.1| 1549|Caenorhabditis elegans Hypothetical pr... 27 5.0
Z47810-4|CAD44132.1| 1583|Caenorhabditis elegans Hypothetical pr... 27 5.0
Z47810-2|CAD89730.3| 1654|Caenorhabditis elegans Hypothetical pr... 27 5.0
U58749-4|AAU05598.1| 1592|Caenorhabditis elegans Hypothetical pr... 27 5.0
AF504312-1|AAM22693.1| 1583|Caenorhabditis elegans adaptor prote... 27 5.0
AC006714-9|AAK29714.5| 430|Caenorhabditis elegans Patterned exp... 27 6.5
Z92807-2|CAD21652.1| 689|Caenorhabditis elegans Hypothetical pr... 26 8.7
Z92807-1|CAB07264.1| 747|Caenorhabditis elegans Hypothetical pr... 26 8.7
Z50874-3|CAA90773.1| 409|Caenorhabditis elegans Hypothetical pr... 26 8.7
Z50874-2|CAA90772.1| 357|Caenorhabditis elegans Hypothetical pr... 26 8.7
U41991-7|AAA83347.1| 255|Caenorhabditis elegans Hypothetical pr... 26 8.7
AF063007-6|AAC16427.2| 523|Caenorhabditis elegans Taf (tbp-asso... 26 8.7
AC025726-31|AAK73929.1| 178|Caenorhabditis elegans Hypothetical... 26 8.7
AC024211-4|AAP82631.1| 487|Caenorhabditis elegans Hypothetical ... 26 8.7
AB039949-1|BAC06512.1| 747|Caenorhabditis elegans kinesin protein. 26 8.7
AB017164-1|BAA32661.1| 689|Caenorhabditis elegans Kinesin like ... 26 8.7
>AC006644-6|AAZ91358.1| 958|Caenorhabditis elegans Hypothetical
protein F55A3.1 protein.
Length = 958
Score = 40.7 bits (91), Expect = 4e-04
Identities = 31/112 (27%), Positives = 43/112 (38%), Gaps = 10/112 (8%)
Frame = +3
Query: 21 VAVHTEAPVNXXXXXXXXXXXXXXXXXXQSHTRTWLKAGVRAWCACAAGVLGLRSYLLGE 200
V++ E P++ ++ R ++K GVR WC L L YLL +
Sbjct: 641 VSMSAETPLSEISLELLILQVVMPAILEHANGRGFIKYGVRFWCKVVGAALDLDQYLLSD 700
Query: 201 AARQTEAN------PPPHPPQQLG----AAHQALMRRDGPAGFEPYTRVSWF 326
+ N P Q G A HQAL+ P +EPY R S F
Sbjct: 701 NNNNNQNNNNNNNDPLRAGNNQAGGGLAAEHQALLLLREPRAYEPYNRPSLF 752
>AF077541-7|AAC64628.1| 197|Caenorhabditis elegans Hypothetical
protein Y23H5A.2 protein.
Length = 197
Score = 37.5 bits (83), Expect = 0.004
Identities = 17/33 (51%), Positives = 21/33 (63%)
Frame = +1
Query: 211 KLKRIHPHIPPNSSGPPIRL*CVVTVQPVSNLT 309
+L I P IPP SSGPP+RL T QP++ T
Sbjct: 27 RLPIIRPKIPPKSSGPPVRLITSATPQPIAPST 59
>Z81053-1|CAB02877.1| 385|Caenorhabditis elegans Hypothetical
protein E02A10.2 protein.
Length = 385
Score = 25.8 bits (54), Expect(2) = 2.7
Identities = 8/10 (80%), Positives = 9/10 (90%)
Frame = -1
Query: 253 PSCWGGCGGG 224
P+C GGCGGG
Sbjct: 59 PACGGGCGGG 68
Score = 25.8 bits (54), Expect(2) = 0.33
Identities = 8/10 (80%), Positives = 9/10 (90%)
Frame = -1
Query: 253 PSCWGGCGGG 224
P+C GGCGGG
Sbjct: 116 PACGGGCGGG 125
Score = 23.8 bits (49), Expect(2) = 0.33
Identities = 8/13 (61%), Positives = 8/13 (61%)
Frame = -1
Query: 247 CWGGCGGGFASVC 209
C GGCGGG C
Sbjct: 129 CGGGCGGGGGGGC 141
Score = 20.6 bits (41), Expect(2) = 2.7
Identities = 7/8 (87%), Positives = 7/8 (87%)
Frame = -1
Query: 241 GGCGGGFA 218
GGCGGG A
Sbjct: 103 GGCGGGCA 110
>U55366-2|AAA97981.1| 156|Caenorhabditis elegans Hypothetical
protein F41F3.3 protein.
Length = 156
Score = 29.5 bits (63), Expect = 0.93
Identities = 13/31 (41%), Positives = 16/31 (51%)
Frame = -1
Query: 256 APSCWGGCGGGFASVCLAASPSRYERNPSTP 164
AP+C GGCGGG A + Y + P P
Sbjct: 71 APACGGGCGGGVAPAPIGGG---YAQAPQAP 98
>U58749-5|AAU05597.1| 1551|Caenorhabditis elegans Hypothetical
protein B0496.3a protein.
Length = 1551
Score = 27.9 bits (59), Expect = 2.8
Identities = 15/49 (30%), Positives = 22/49 (44%), Gaps = 3/49 (6%)
Frame = +3
Query: 192 LGEAARQTEANPPPHP---PQQLGAAHQALMRRDGPAGFEPYTRVSWFP 329
L EANPPP P PQ L A + L++R ++ + +P
Sbjct: 756 LAPVVENLEANPPPDPSSSPQFLDAFDRGLIKRQSKGKYQAKEILQTYP 804
>U88170-4|AAB42245.2| 425|Caenorhabditis elegans Hypothetical
protein C10G11.6 protein.
Length = 425
Score = 27.5 bits (58), Expect = 3.7
Identities = 12/31 (38%), Positives = 17/31 (54%)
Frame = -2
Query: 339 PIVTGTTIRGCKVRNRLDRHDALEPDGRPRA 247
P + G +RG V NR +R EPD P++
Sbjct: 384 PGLVGINVRGLFVGNRSNRQQTPEPDESPKS 414
>Z50109-13|CAD44092.1| 1549|Caenorhabditis elegans Hypothetical
protein F45E10.1b protein.
Length = 1549
Score = 27.1 bits (57), Expect = 5.0
Identities = 9/30 (30%), Positives = 16/30 (53%)
Frame = +2
Query: 311 PRIVVPVTIGRAPSPGISVVGTGQRVNPDS 400
P ++P + + PSP ++ T NP+S
Sbjct: 131 PTSIMPPAVSKLPSPRVATSATASATNPNS 160
>Z50109-12|CAD44091.1| 1583|Caenorhabditis elegans Hypothetical
protein F45E10.1a protein.
Length = 1583
Score = 27.1 bits (57), Expect = 5.0
Identities = 9/30 (30%), Positives = 16/30 (53%)
Frame = +2
Query: 311 PRIVVPVTIGRAPSPGISVVGTGQRVNPDS 400
P ++P + + PSP ++ T NP+S
Sbjct: 131 PTSIMPPAVSKLPSPRVATSATASATNPNS 160
>Z50109-10|CAD89729.3| 1654|Caenorhabditis elegans Hypothetical
protein F45E10.1c protein.
Length = 1654
Score = 27.1 bits (57), Expect = 5.0
Identities = 9/30 (30%), Positives = 16/30 (53%)
Frame = +2
Query: 311 PRIVVPVTIGRAPSPGISVVGTGQRVNPDS 400
P ++P + + PSP ++ T NP+S
Sbjct: 131 PTSIMPPAVSKLPSPRVATSATASATNPNS 160
>Z47810-5|CAD44133.1| 1549|Caenorhabditis elegans Hypothetical
protein F45E10.1b protein.
Length = 1549
Score = 27.1 bits (57), Expect = 5.0
Identities = 9/30 (30%), Positives = 16/30 (53%)
Frame = +2
Query: 311 PRIVVPVTIGRAPSPGISVVGTGQRVNPDS 400
P ++P + + PSP ++ T NP+S
Sbjct: 131 PTSIMPPAVSKLPSPRVATSATASATNPNS 160
>Z47810-4|CAD44132.1| 1583|Caenorhabditis elegans Hypothetical
protein F45E10.1a protein.
Length = 1583
Score = 27.1 bits (57), Expect = 5.0
Identities = 9/30 (30%), Positives = 16/30 (53%)
Frame = +2
Query: 311 PRIVVPVTIGRAPSPGISVVGTGQRVNPDS 400
P ++P + + PSP ++ T NP+S
Sbjct: 131 PTSIMPPAVSKLPSPRVATSATASATNPNS 160
>Z47810-2|CAD89730.3| 1654|Caenorhabditis elegans Hypothetical
protein F45E10.1c protein.
Length = 1654
Score = 27.1 bits (57), Expect = 5.0
Identities = 9/30 (30%), Positives = 16/30 (53%)
Frame = +2
Query: 311 PRIVVPVTIGRAPSPGISVVGTGQRVNPDS 400
P ++P + + PSP ++ T NP+S
Sbjct: 131 PTSIMPPAVSKLPSPRVATSATASATNPNS 160
>U58749-4|AAU05598.1| 1592|Caenorhabditis elegans Hypothetical
protein B0496.3b protein.
Length = 1592
Score = 27.1 bits (57), Expect = 5.0
Identities = 14/40 (35%), Positives = 19/40 (47%), Gaps = 3/40 (7%)
Frame = +3
Query: 192 LGEAARQTEANPPPHP---PQQLGAAHQALMRRDGPAGFE 302
L EANPPP P PQ L A + L++R ++
Sbjct: 756 LAPVVENLEANPPPDPSSSPQFLDAFDRGLIKRQSKGKYQ 795
>AF504312-1|AAM22693.1| 1583|Caenorhabditis elegans adaptor protein
UNC-53 protein.
Length = 1583
Score = 27.1 bits (57), Expect = 5.0
Identities = 9/30 (30%), Positives = 16/30 (53%)
Frame = +2
Query: 311 PRIVVPVTIGRAPSPGISVVGTGQRVNPDS 400
P ++P + + PSP ++ T NP+S
Sbjct: 131 PTSIMPPAVSKLPSPRVATSATASATNPNS 160
>AC006714-9|AAK29714.5| 430|Caenorhabditis elegans Patterned
expression site protein 4 protein.
Length = 430
Score = 26.6 bits (56), Expect = 6.5
Identities = 17/46 (36%), Positives = 21/46 (45%), Gaps = 5/46 (10%)
Frame = +1
Query: 217 KRIHPHIPPNSSGPPIRL*CVV-----TVQPVSNLTPAYRGSRYDW 339
KR+H HIPP ++ PI V T + T RGS Y W
Sbjct: 223 KRLHNHIPPKTNVQPIGNRHVSGYNCRTTTTGTGSTATRRGSTYGW 268
>Z92807-2|CAD21652.1| 689|Caenorhabditis elegans Hypothetical
protein K11D9.1b protein.
Length = 689
Score = 26.2 bits (55), Expect = 8.7
Identities = 11/32 (34%), Positives = 18/32 (56%)
Frame = +3
Query: 192 LGEAARQTEANPPPHPPQQLGAAHQALMRRDG 287
L + + + PPP PPQ+ A A+ R++G
Sbjct: 54 LNPSLQAPKPTPPPQPPQKTLQASTAVNRQNG 85
>Z92807-1|CAB07264.1| 747|Caenorhabditis elegans Hypothetical
protein K11D9.1a protein.
Length = 747
Score = 26.2 bits (55), Expect = 8.7
Identities = 11/32 (34%), Positives = 18/32 (56%)
Frame = +3
Query: 192 LGEAARQTEANPPPHPPQQLGAAHQALMRRDG 287
L + + + PPP PPQ+ A A+ R++G
Sbjct: 112 LNPSLQAPKPTPPPQPPQKTLQASTAVNRQNG 143
>Z50874-3|CAA90773.1| 409|Caenorhabditis elegans Hypothetical
protein R10E4.2b protein.
Length = 409
Score = 26.2 bits (55), Expect = 8.7
Identities = 15/37 (40%), Positives = 18/37 (48%), Gaps = 3/37 (8%)
Frame = +3
Query: 195 GEAARQTEANPPPHPPQQLGAAH---QALMRRDGPAG 296
G+A +Q + PP H QQ H Q MR GP G
Sbjct: 19 GQAPQQQQQGPPQHQYQQQRPFHGRVQNHMRGSGPFG 55
>Z50874-2|CAA90772.1| 357|Caenorhabditis elegans Hypothetical
protein R10E4.2a protein.
Length = 357
Score = 26.2 bits (55), Expect = 8.7
Identities = 15/37 (40%), Positives = 18/37 (48%), Gaps = 3/37 (8%)
Frame = +3
Query: 195 GEAARQTEANPPPHPPQQLGAAH---QALMRRDGPAG 296
G+A +Q + PP H QQ H Q MR GP G
Sbjct: 19 GQAPQQQQQGPPQHQYQQQRPFHGRVQNHMRGSGPFG 55
>U41991-7|AAA83347.1| 255|Caenorhabditis elegans Hypothetical
protein C42D4.3 protein.
Length = 255
Score = 26.2 bits (55), Expect = 8.7
Identities = 8/12 (66%), Positives = 10/12 (83%)
Frame = -1
Query: 253 PSCWGGCGGGFA 218
P C GGCGGG++
Sbjct: 41 PMCSGGCGGGYS 52
>AF063007-6|AAC16427.2| 523|Caenorhabditis elegans Taf
(tbp-associated transcriptionfactor) family protein 4
protein.
Length = 523
Score = 26.2 bits (55), Expect = 8.7
Identities = 12/33 (36%), Positives = 16/33 (48%)
Frame = +3
Query: 171 LGLRSYLLGEAARQTEANPPPHPPQQLGAAHQA 269
+GL+ + G Q PP PPQQ+ H A
Sbjct: 264 MGLQGPVRGPMGHQMVQMHPPPPPQQIQQQHPA 296
>AC025726-31|AAK73929.1| 178|Caenorhabditis elegans Hypothetical
protein Y71G12B.3 protein.
Length = 178
Score = 26.2 bits (55), Expect = 8.7
Identities = 12/23 (52%), Positives = 15/23 (65%)
Frame = +3
Query: 225 PPPHPPQQLGAAHQALMRRDGPA 293
PPP PP+ + AH AL+ DG A
Sbjct: 48 PPPPPPETV--AHDALISDDGAA 68
>AC024211-4|AAP82631.1| 487|Caenorhabditis elegans Hypothetical
protein Y76B12C.6 protein.
Length = 487
Score = 26.2 bits (55), Expect = 8.7
Identities = 13/35 (37%), Positives = 17/35 (48%)
Frame = +3
Query: 201 AARQTEANPPPHPPQQLGAAHQALMRRDGPAGFEP 305
AA Q + PPP PPQ G +++ G G P
Sbjct: 338 AAVQQASAPPPAPPQLQGIDLATILQSFGAPGAAP 372
>AB039949-1|BAC06512.1| 747|Caenorhabditis elegans kinesin protein.
Length = 747
Score = 26.2 bits (55), Expect = 8.7
Identities = 11/32 (34%), Positives = 18/32 (56%)
Frame = +3
Query: 192 LGEAARQTEANPPPHPPQQLGAAHQALMRRDG 287
L + + + PPP PPQ+ A A+ R++G
Sbjct: 112 LNPSLQAPKPTPPPQPPQKTLQASTAVNRQNG 143
>AB017164-1|BAA32661.1| 689|Caenorhabditis elegans Kinesin like
protein (klp-7) protein.
Length = 689
Score = 26.2 bits (55), Expect = 8.7
Identities = 11/32 (34%), Positives = 18/32 (56%)
Frame = +3
Query: 192 LGEAARQTEANPPPHPPQQLGAAHQALMRRDG 287
L + + + PPP PPQ+ A A+ R++G
Sbjct: 54 LNPSLQAPKPTPPPQPPQKTLQASTAVNRQNG 85
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,989,127
Number of Sequences: 27780
Number of extensions: 181950
Number of successful extensions: 807
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 716
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 805
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 619699724
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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