Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_J09
         (400 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    22   2.2  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    21   3.9  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    21   3.9  
U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive o...    21   5.2  
AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin ...    21   5.2  
AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    20   9.1  
AY217747-1|AAP45005.1|  246|Apis mellifera short-chain dehydroge...    20   9.1  
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    20   9.1  

>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 22.2 bits (45), Expect = 2.2
 Identities = 9/26 (34%), Positives = 14/26 (53%)
 Frame = +3

Query: 177 LRSYLLGEAARQTEANPPPHPPQQLG 254
           L + +LG++    +  PPP PP   G
Sbjct: 327 LVNIVLGDSDTPPKPAPPPPPPSSSG 352


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 21.4 bits (43), Expect = 3.9
 Identities = 9/24 (37%), Positives = 12/24 (50%)
 Frame = +3

Query: 192  LGEAARQTEANPPPHPPQQLGAAH 263
            L   A + +  PPP PP   G A+
Sbjct: 1345 LERTAWRQQQPPPPPPPPSSGQAY 1368


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
            protein.
          Length = 1308

 Score = 21.4 bits (43), Expect = 3.9
 Identities = 7/18 (38%), Positives = 12/18 (66%)
 Frame = +2

Query: 305  LHPRIVVPVTIGRAPSPG 358
            ++ R++ P TI  + SPG
Sbjct: 1272 VYARVIAPTTITSSQSPG 1289


>U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive
           opsin protein.
          Length = 377

 Score = 21.0 bits (42), Expect = 5.2
 Identities = 11/24 (45%), Positives = 12/24 (50%)
 Frame = +1

Query: 1   QEFGRGLWQYIQRLL*MSLAWNCC 72
           + F  GL      LL MSL  NCC
Sbjct: 54  KHFHIGLAIIYSMLLIMSLVGNCC 77


>AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin
           protein.
          Length = 377

 Score = 21.0 bits (42), Expect = 5.2
 Identities = 11/24 (45%), Positives = 12/24 (50%)
 Frame = +1

Query: 1   QEFGRGLWQYIQRLL*MSLAWNCC 72
           + F  GL      LL MSL  NCC
Sbjct: 54  KHFHIGLAIIYSMLLIMSLVGNCC 77


>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 20.2 bits (40), Expect = 9.1
 Identities = 6/18 (33%), Positives = 12/18 (66%)
 Frame = +3

Query: 198 EAARQTEANPPPHPPQQL 251
           +  ++TE   PP PP+++
Sbjct: 628 DGTQETEERLPPLPPKRI 645


>AY217747-1|AAP45005.1|  246|Apis mellifera short-chain
           dehydrogenase/reductase protein.
          Length = 246

 Score = 20.2 bits (40), Expect = 9.1
 Identities = 10/31 (32%), Positives = 16/31 (51%)
 Frame = +1

Query: 133 PAYVRGARALLACSGCVRTCSARRRDKLKRI 225
           PAY+    AL   + C+R+  A+    +K I
Sbjct: 159 PAYLASKCALTTLTDCLRSELAQCESNIKVI 189


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 20.2 bits (40), Expect = 9.1
 Identities = 7/16 (43%), Positives = 9/16 (56%)
 Frame = -2

Query: 387 TRWPVPTTLIPGEGAR 340
           TRWP  + +    GAR
Sbjct: 779 TRWPATSVITTTTGAR 794


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 113,319
Number of Sequences: 438
Number of extensions: 2527
Number of successful extensions: 9
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used:  9885360
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)