Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_J09
         (400 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g35230.2 68415.m04322 VQ motif-containing protein contains PF...    29   1.1  
At2g35230.1 68415.m04321 VQ motif-containing protein contains PF...    29   1.1  
At2g17130.2 68415.m01978 isocitrate dehydrogenase subunit 2 / NA...    29   1.5  
At2g17130.1 68415.m01977 isocitrate dehydrogenase subunit 2 / NA...    29   1.5  
At5g66680.1 68418.m08406 dolichyl-diphosphooligosaccharide-prote...    27   3.5  
At4g35650.1 68417.m05062 isocitrate dehydrogenase, putative / NA...    27   3.5  
At5g01100.1 68418.m00014 expressed protein similar to axi 1 [Nic...    27   4.6  
At3g16350.1 68416.m02068 myb family transcription factor ; conta...    27   6.1  
At2g03210.1 68415.m00274 xyloglucan fucosyltransferase, putative...    27   6.1  
At3g32400.1 68416.m04142 formin homology 2 domain-containing pro...    26   8.0  

>At2g35230.2 68415.m04322 VQ motif-containing protein contains
           PF05678: VQ motif
          Length = 295

 Score = 29.1 bits (62), Expect = 1.1
 Identities = 12/37 (32%), Positives = 18/37 (48%)
 Frame = +3

Query: 180 RSYLLGEAARQTEANPPPHPPQQLGAAHQALMRRDGP 290
           RSY+  ++  Q++  P P P Q +    Q  M   GP
Sbjct: 108 RSYMPAQSQSQSQPQPQPQPQQHMMPGPQPRMNMQGP 144


>At2g35230.1 68415.m04321 VQ motif-containing protein contains
           PF05678: VQ motif
          Length = 402

 Score = 29.1 bits (62), Expect = 1.1
 Identities = 12/37 (32%), Positives = 18/37 (48%)
 Frame = +3

Query: 180 RSYLLGEAARQTEANPPPHPPQQLGAAHQALMRRDGP 290
           RSY+  ++  Q++  P P P Q +    Q  M   GP
Sbjct: 215 RSYMPAQSQSQSQPQPQPQPQQHMMPGPQPRMNMQGP 251


>At2g17130.2 68415.m01978 isocitrate dehydrogenase subunit 2 / NAD+
           isocitrate dehydrogenase subunit 2 nearly identical to
           NAD+ dependent isocitrate dehydrogenase subunit 2
           [Arabidopsis thaliana] GI:1766048
          Length = 363

 Score = 28.7 bits (61), Expect = 1.5
 Identities = 11/17 (64%), Positives = 13/17 (76%)
 Frame = -2

Query: 378 PVPTTLIPGEGARPIVT 328
           P P TLIPG+G  P+VT
Sbjct: 37  PRPVTLIPGDGVGPLVT 53


>At2g17130.1 68415.m01977 isocitrate dehydrogenase subunit 2 / NAD+
           isocitrate dehydrogenase subunit 2 nearly identical to
           NAD+ dependent isocitrate dehydrogenase subunit 2
           [Arabidopsis thaliana] GI:1766048
          Length = 367

 Score = 28.7 bits (61), Expect = 1.5
 Identities = 11/17 (64%), Positives = 13/17 (76%)
 Frame = -2

Query: 378 PVPTTLIPGEGARPIVT 328
           P P TLIPG+G  P+VT
Sbjct: 37  PRPVTLIPGDGVGPLVT 53


>At5g66680.1 68418.m08406 dolichyl-diphosphooligosaccharide-protein
           glycosyltransferase 48kDa subunit family protein similar
           to SP|Q05052 Dolichyl-diphosphooligosaccharide--protein
           glycosyltransferase 48 kDa subunit precursor (EC
           2.4.1.119) (Oligosaccharyl transferase 48 kDa subunit)
           {Canis familiaris}; contains Pfam profile PF03345:
           Dolichyl-diphosphooligosaccharide-protein
           glycosyltransferase 48kD subunit
          Length = 437

 Score = 27.5 bits (58), Expect = 3.5
 Identities = 15/39 (38%), Positives = 18/39 (46%)
 Frame = -1

Query: 208 LAASPSRYERNPSTPXXXXXXARTPAFSHVRVCDCSNNA 92
           L+ASPS Y  NPS+           + S V V    NNA
Sbjct: 202 LSASPSAYSANPSSKLSSPPQLTGSSISLVSVMQARNNA 240


>At4g35650.1 68417.m05062 isocitrate dehydrogenase, putative / NAD+
           isocitrate dehydrogenase, putative strong similarity to
           NAD+ dependent isocitrate dehydrogenase subunit 1
           [Arabidopsis thaliana] GI:1766046
          Length = 368

 Score = 27.5 bits (58), Expect = 3.5
 Identities = 11/18 (61%), Positives = 13/18 (72%)
 Frame = -2

Query: 378 PVPTTLIPGEGARPIVTG 325
           P   TLIPG+G  P+VTG
Sbjct: 38  PRTVTLIPGDGIGPLVTG 55


>At5g01100.1 68418.m00014 expressed protein similar to axi 1
           [Nicotiana tabacum] GI:559921; contains Pfam profile
           PF03138: Plant protein family
          Length = 631

 Score = 27.1 bits (57), Expect = 4.6
 Identities = 20/66 (30%), Positives = 25/66 (37%)
 Frame = -1

Query: 382 LASTNDTDTRRRSAPNRNGNHDTRV*GSKPAGPSRRIRA*WAAPSCWGGCGGGFASVCLA 203
           L +   T TRRR A ++  +      G   A          A   C GG GGG  S C +
Sbjct: 15  LPAAPTTTTRRRVADSQEDHSHVNTVGGGNAVVYVPDEEETATSCCGGGGGGGSLSCCPS 74

Query: 202 ASPSRY 185
            S   Y
Sbjct: 75  GSHHNY 80


>At3g16350.1 68416.m02068 myb family transcription factor ; contains
           Pfam profile: PF00249 Myb-like DNA-binding domain
          Length = 387

 Score = 26.6 bits (56), Expect = 6.1
 Identities = 12/51 (23%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
 Frame = -1

Query: 229 GGFASVCLAASPSRYER-NPSTPXXXXXXARTPAFSHVRVCDCSNNAGNIT 80
           G  +++ +AA+ + + R +PS+P        +P   H R  +  +N G ++
Sbjct: 67  GNLSALAVAAAAATHHRLSPSSPLATSNLNDSPLSDHARYSNLHHNEGYLS 117


>At2g03210.1 68415.m00274 xyloglucan fucosyltransferase, putative
           (FUT2) identical to SP|O81053 Probable
           fucosyltransferase 2 (EC 2.4.1.-) (AtFUT2) {Arabidopsis
           thaliana}; similar to xyloglucan fucosyltransferase
           GI:5231145 from [Arabidopsis thaliana]
          Length = 539

 Score = 26.6 bits (56), Expect = 6.1
 Identities = 14/37 (37%), Positives = 20/37 (54%), Gaps = 3/37 (8%)
 Frame = +3

Query: 129 KAGVRAWCA---CAAGVLGLRSYLLGEAARQTEANPP 230
           K  + AW      A G+ GLR+++L +   QT  NPP
Sbjct: 453 KLVISAWSTFGYVAQGLGGLRAWILYKQENQTNPNPP 489


>At3g32400.1 68416.m04142 formin homology 2 domain-containing
           protein / FH2 domain-containing protein common family
           members: At2g43800, At3g25500, At5g48360, At4g15200,
           At3g05470, At3g07540, At5g07780, At5g07650 [Arabidopsis
           thaliana];
          Length = 488

 Score = 26.2 bits (55), Expect = 8.0
 Identities = 13/31 (41%), Positives = 13/31 (41%)
 Frame = +3

Query: 213 TEANPPPHPPQQLGAAHQALMRRDGPAGFEP 305
           TE  PPP PP  L   H AL     P    P
Sbjct: 9   TEGPPPPPPPPLLQPHHSALSSSPLPPPLPP 39


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,661,725
Number of Sequences: 28952
Number of extensions: 174496
Number of successful extensions: 657
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 614
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 652
length of database: 12,070,560
effective HSP length: 74
effective length of database: 9,928,112
effective search space used: 575830496
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)