Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0001_J08
(407 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_0646 + 20250684-20250686,20251522-20251701,20251899-202519... 114 2e-26
07_03_0641 + 20214245-20214247,20215086-20215265,20215463-202155... 114 2e-26
07_03_0226 + 15395380-15395382,15396993-15397172,15397286-153973... 114 2e-26
07_03_0648 + 20257442-20257528,20257688-20257867,20258055-202581... 112 9e-26
07_03_0643 + 20239224-20239310,20239470-20239649,20239837-202399... 112 9e-26
07_03_0640 + 20207497-20207554,20208457-20208482,20208522-202087... 112 9e-26
07_03_0639 + 20203902-20203988,20204152-20204331,20204529-202046... 112 9e-26
07_03_0645 + 20244889-20244942,20245331-20245405,20245502-20245561 53 8e-08
03_04_0161 + 17838466-17838551,17842379-17842445,17842537-178426... 30 0.81
02_01_0043 + 300122-300907,301447-301722,302347-302481 29 1.9
>07_03_0646 +
20250684-20250686,20251522-20251701,20251899-20251973,
20252072-20252131
Length = 105
Score = 114 bits (275), Expect = 2e-26
Identities = 54/101 (53%), Positives = 66/101 (65%), Gaps = 2/101 (1%)
Frame = +1
Query: 49 MVNVPKQRRTYXXXXX--XXXXXXXSQYKKSKERHAAQGRRRYDRKQQGYGGQSKPIFXX 222
MVNVPK ++TY +QYKK K+ +AQG+RRYDRKQ GYGGQ+KP+F
Sbjct: 1 MVNVPKTKKTYCKNKECRKHTLHKVTQYKKGKDSLSAQGKRRYDRKQSGYGGQTKPVFHK 60
Query: 223 XXXXXXXIVLRLECADCKVRSQVALKRCKHFELGGDKKRKG 345
IVL+L+C CK SQ +KRCKHFE+GGDKK KG
Sbjct: 61 KAKTTKKIVLKLQCQSCKHYSQHPIKRCKHFEIGGDKKGKG 101
>07_03_0641 +
20214245-20214247,20215086-20215265,20215463-20215537,
20215636-20215695
Length = 105
Score = 114 bits (275), Expect = 2e-26
Identities = 54/101 (53%), Positives = 66/101 (65%), Gaps = 2/101 (1%)
Frame = +1
Query: 49 MVNVPKQRRTYXXXXX--XXXXXXXSQYKKSKERHAAQGRRRYDRKQQGYGGQSKPIFXX 222
MVNVPK ++TY +QYKK K+ +AQG+RRYDRKQ GYGGQ+KP+F
Sbjct: 1 MVNVPKTKKTYCKNKECRKHTLHKVTQYKKGKDSLSAQGKRRYDRKQSGYGGQTKPVFHK 60
Query: 223 XXXXXXXIVLRLECADCKVRSQVALKRCKHFELGGDKKRKG 345
IVL+L+C CK SQ +KRCKHFE+GGDKK KG
Sbjct: 61 KAKTTKKIVLKLQCQSCKHYSQHPIKRCKHFEIGGDKKGKG 101
>07_03_0226 +
15395380-15395382,15396993-15397172,15397286-15397360,
15397466-15397525
Length = 105
Score = 114 bits (275), Expect = 2e-26
Identities = 54/101 (53%), Positives = 66/101 (65%), Gaps = 2/101 (1%)
Frame = +1
Query: 49 MVNVPKQRRTYXXXXX--XXXXXXXSQYKKSKERHAAQGRRRYDRKQQGYGGQSKPIFXX 222
MVNVPK ++TY +QYKK K+ +AQG+RRYDRKQ GYGGQ+KP+F
Sbjct: 1 MVNVPKTKKTYCKNKECRKHTLHKVTQYKKGKDSLSAQGKRRYDRKQSGYGGQTKPVFHK 60
Query: 223 XXXXXXXIVLRLECADCKVRSQVALKRCKHFELGGDKKRKG 345
IVL+L+C CK SQ +KRCKHFE+GGDKK KG
Sbjct: 61 KAKTTKKIVLKLQCQSCKHYSQHPIKRCKHFEIGGDKKGKG 101
>07_03_0648 +
20257442-20257528,20257688-20257867,20258055-20258129,
20258230-20258289
Length = 133
Score = 112 bits (270), Expect = 9e-26
Identities = 53/100 (53%), Positives = 65/100 (65%), Gaps = 2/100 (2%)
Frame = +1
Query: 52 VNVPKQRRTYXXXXX--XXXXXXXSQYKKSKERHAAQGRRRYDRKQQGYGGQSKPIFXXX 225
VNVPK ++TY +QYKK K+ +AQG+RRYDRKQ GYGGQ+KP+F
Sbjct: 30 VNVPKTKKTYCKNKECRKHTLHKVTQYKKGKDSLSAQGKRRYDRKQSGYGGQTKPVFHKK 89
Query: 226 XXXXXXIVLRLECADCKVRSQVALKRCKHFELGGDKKRKG 345
IVL+L+C CK SQ +KRCKHFE+GGDKK KG
Sbjct: 90 AKTTKKIVLKLQCQSCKHYSQHPIKRCKHFEIGGDKKGKG 129
>07_03_0643 +
20239224-20239310,20239470-20239649,20239837-20239911,
20240012-20240071
Length = 133
Score = 112 bits (270), Expect = 9e-26
Identities = 53/100 (53%), Positives = 65/100 (65%), Gaps = 2/100 (2%)
Frame = +1
Query: 52 VNVPKQRRTYXXXXX--XXXXXXXSQYKKSKERHAAQGRRRYDRKQQGYGGQSKPIFXXX 225
VNVPK ++TY +QYKK K+ +AQG+RRYDRKQ GYGGQ+KP+F
Sbjct: 30 VNVPKTKKTYCKNKECRKHTLHKVTQYKKGKDSLSAQGKRRYDRKQSGYGGQTKPVFHKK 89
Query: 226 XXXXXXIVLRLECADCKVRSQVALKRCKHFELGGDKKRKG 345
IVL+L+C CK SQ +KRCKHFE+GGDKK KG
Sbjct: 90 AKTTKKIVLKLQCQSCKHYSQHPIKRCKHFEIGGDKKGKG 129
>07_03_0640 +
20207497-20207554,20208457-20208482,20208522-20208701,
20208891-20208965,20209062-20209121
Length = 132
Score = 112 bits (270), Expect = 9e-26
Identities = 53/100 (53%), Positives = 65/100 (65%), Gaps = 2/100 (2%)
Frame = +1
Query: 52 VNVPKQRRTYXXXXX--XXXXXXXSQYKKSKERHAAQGRRRYDRKQQGYGGQSKPIFXXX 225
VNVPK ++TY +QYKK K+ +AQG+RRYDRKQ GYGGQ+KP+F
Sbjct: 29 VNVPKTKKTYCKNKECRKHTLHKVTQYKKGKDSLSAQGKRRYDRKQSGYGGQTKPVFHKK 88
Query: 226 XXXXXXIVLRLECADCKVRSQVALKRCKHFELGGDKKRKG 345
IVL+L+C CK SQ +KRCKHFE+GGDKK KG
Sbjct: 89 AKTTKKIVLKLQCQSCKHYSQHPIKRCKHFEIGGDKKGKG 128
>07_03_0639 +
20203902-20203988,20204152-20204331,20204529-20204603,
20204696-20204755
Length = 133
Score = 112 bits (270), Expect = 9e-26
Identities = 53/100 (53%), Positives = 65/100 (65%), Gaps = 2/100 (2%)
Frame = +1
Query: 52 VNVPKQRRTYXXXXX--XXXXXXXSQYKKSKERHAAQGRRRYDRKQQGYGGQSKPIFXXX 225
VNVPK ++TY +QYKK K+ +AQG+RRYDRKQ GYGGQ+KP+F
Sbjct: 30 VNVPKTKKTYCKNKECRKHTLHKVTQYKKGKDSLSAQGKRRYDRKQSGYGGQTKPVFHKK 89
Query: 226 XXXXXXIVLRLECADCKVRSQVALKRCKHFELGGDKKRKG 345
IVL+L+C CK SQ +KRCKHFE+GGDKK KG
Sbjct: 90 AKTTKKIVLKLQCQSCKHYSQHPIKRCKHFEIGGDKKGKG 129
>07_03_0645 + 20244889-20244942,20245331-20245405,20245502-20245561
Length = 62
Score = 53.2 bits (122), Expect = 8e-08
Identities = 22/34 (64%), Positives = 27/34 (79%)
Frame = +1
Query: 244 IVLRLECADCKVRSQVALKRCKHFELGGDKKRKG 345
IVL+L+C CK SQ +KRCKHF++GGDKK KG
Sbjct: 25 IVLKLQCQSCKHYSQHPIKRCKHFKIGGDKKGKG 58
>03_04_0161 +
17838466-17838551,17842379-17842445,17842537-17842662,
17842756-17842886,17843121-17843220,17843334-17843466,
17843500-17843544,17843545-17843608,17843692-17844469,
17844897-17845229,17845427-17845634,17845733-17845809,
17846168-17846240,17846343-17846413,17846597-17846716,
17846815-17846879,17846974-17847124
Length = 875
Score = 29.9 bits (64), Expect = 0.81
Identities = 15/49 (30%), Positives = 23/49 (46%)
Frame = +1
Query: 163 RRYDRKQQGYGGQSKPIFXXXXXXXXXIVLRLECADCKVRSQVALKRCK 309
+ + + QG GG S +F ++LE ADC + +V RCK
Sbjct: 207 KELEGRLQGIGGFSNCLFTFLFAGVSMDEVKLEQADCDMDERVYCDRCK 255
>02_01_0043 + 300122-300907,301447-301722,302347-302481
Length = 398
Score = 28.7 bits (61), Expect = 1.9
Identities = 13/29 (44%), Positives = 15/29 (51%)
Frame = -1
Query: 347 CPFLFLSPPSSKCLQRFRATCDLTLQSAH 261
CP F SPPSS C F ++ DL H
Sbjct: 45 CPLGFTSPPSSSCPLGFTSSYDLDAAFHH 73
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,626,597
Number of Sequences: 37544
Number of extensions: 167894
Number of successful extensions: 465
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 451
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 458
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 718652880
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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