Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0001_J08
(407 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_33724| Best HMM Match : Ribosomal_L44 (HMM E-Value=0) 128 1e-30
SB_37591| Best HMM Match : Ribosomal_L44 (HMM E-Value=0.026) 62 1e-10
SB_5824| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.48
SB_52935| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.1
SB_47692| Best HMM Match : Ribosomal_S14 (HMM E-Value=7.4) 29 1.9
SB_30089| Best HMM Match : Ribosomal_S14 (HMM E-Value=7.4) 29 1.9
SB_57013| Best HMM Match : Pico_P2A (HMM E-Value=3.2) 25 2.4
SB_20022| Best HMM Match : Glyco_transf_10 (HMM E-Value=1.1e-20) 28 2.6
SB_36787| Best HMM Match : Ribosomal_S14 (HMM E-Value=3.3) 28 2.6
SB_29727| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 2.6
SB_40225| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 3.4
SB_20037| Best HMM Match : 7tm_1 (HMM E-Value=3.09687e-43) 28 3.4
SB_17270| Best HMM Match : ABC_tran (HMM E-Value=5.1e-08) 27 4.5
SB_23929| Best HMM Match : PT (HMM E-Value=0.21) 27 5.9
SB_2961| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 5.9
SB_42699| Best HMM Match : SIR2 (HMM E-Value=1.6e-12) 27 7.8
SB_30079| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.8
>SB_33724| Best HMM Match : Ribosomal_L44 (HMM E-Value=0)
Length = 113
Score = 128 bits (310), Expect = 1e-30
Identities = 61/106 (57%), Positives = 71/106 (66%), Gaps = 2/106 (1%)
Frame = +1
Query: 49 MVNVPKQRRTYXXXXX--XXXXXXXSQYKKSKERHAAQGRRRYDRKQQGYGGQSKPIFXX 222
+VNVPKQR+T+ +QYK K AQG+RRYDRKQ G+GGQ+KP+F
Sbjct: 8 VVNVPKQRKTFCKGKKCRRHTLHKVTQYKTGKASLFAQGKRRYDRKQSGFGGQTKPVFHK 67
Query: 223 XXXXXXXIVLRLECADCKVRSQVALKRCKHFELGGDKKRKGQMIQF 360
IVLR+EC CK R Q+ LKRCKHFELGGDKKRKGQMIQF
Sbjct: 68 KAKTTKKIVLRMECTQCKYRKQMPLKRCKHFELGGDKKRKGQMIQF 113
>SB_37591| Best HMM Match : Ribosomal_L44 (HMM E-Value=0.026)
Length = 39
Score = 62.5 bits (145), Expect = 1e-10
Identities = 26/33 (78%), Positives = 28/33 (84%)
Frame = +1
Query: 244 IVLRLECADCKVRSQVALKRCKHFELGGDKKRK 342
IVLR+EC CK R Q+ LKRCKHFELGGDKKRK
Sbjct: 7 IVLRMECTQCKYRKQMPLKRCKHFELGGDKKRK 39
>SB_5824| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 308
Score = 30.7 bits (66), Expect = 0.48
Identities = 13/30 (43%), Positives = 17/30 (56%)
Frame = -2
Query: 130 FCTETLCELCDICIFCSMFCAVWVRSPFLR 41
+C +C +CI CS + AVWVR F R
Sbjct: 158 YCMVVSLTVC-LCIICSSYSAVWVRVHFKR 186
>SB_52935| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1333
Score = 29.5 bits (63), Expect = 1.1
Identities = 10/23 (43%), Positives = 15/23 (65%)
Frame = -2
Query: 121 ETLCELCDICIFCSMFCAVWVRS 53
E+ C LCD +FC FC + ++S
Sbjct: 260 ESFCRLCDNYLFCLKFCDLRIKS 282
>SB_47692| Best HMM Match : Ribosomal_S14 (HMM E-Value=7.4)
Length = 162
Score = 28.7 bits (61), Expect = 1.9
Identities = 10/23 (43%), Positives = 15/23 (65%)
Frame = -2
Query: 121 ETLCELCDICIFCSMFCAVWVRS 53
E+ C LCD +FC FC + ++S
Sbjct: 95 ESSCRLCDDYLFCLKFCDLRIKS 117
>SB_30089| Best HMM Match : Ribosomal_S14 (HMM E-Value=7.4)
Length = 119
Score = 28.7 bits (61), Expect = 1.9
Identities = 10/23 (43%), Positives = 15/23 (65%)
Frame = -2
Query: 121 ETLCELCDICIFCSMFCAVWVRS 53
E+ C LCD +FC FC + ++S
Sbjct: 52 ESSCRLCDDYLFCLKFCDLRIKS 74
>SB_57013| Best HMM Match : Pico_P2A (HMM E-Value=3.2)
Length = 474
Score = 24.6 bits (51), Expect(2) = 2.4
Identities = 9/17 (52%), Positives = 12/17 (70%)
Frame = +1
Query: 280 RSQVALKRCKHFELGGD 330
+S++A RC H LGGD
Sbjct: 419 QSRIAFPRCAHGPLGGD 435
Score = 22.2 bits (45), Expect(2) = 2.4
Identities = 10/28 (35%), Positives = 15/28 (53%)
Frame = +1
Query: 133 SKERHAAQGRRRYDRKQQGYGGQSKPIF 216
++ RH + RRRY + G QS+ F
Sbjct: 397 AERRHNGRDRRRYGQPDSGDVRQSRIAF 424
>SB_20022| Best HMM Match : Glyco_transf_10 (HMM E-Value=1.1e-20)
Length = 392
Score = 28.3 bits (60), Expect = 2.6
Identities = 20/67 (29%), Positives = 29/67 (43%), Gaps = 3/67 (4%)
Frame = -2
Query: 358 TGSFVPSSSCH-HQAQSAYNASGPPVTSPCSLHIPDEVQFSL*FL--PSF*RWVWIDHHN 188
+G+ P S+C A+ + AS + + P EV F P +WVW +H N
Sbjct: 80 SGNICPVSNCRITTAKGNFRASDAVIFH--GVMTPHEVTSGELFKYKPKDQKWVWYEHEN 137
Query: 187 PVVYGRN 167
PV N
Sbjct: 138 PVKMSNN 144
>SB_36787| Best HMM Match : Ribosomal_S14 (HMM E-Value=3.3)
Length = 280
Score = 28.3 bits (60), Expect = 2.6
Identities = 10/20 (50%), Positives = 13/20 (65%)
Frame = -2
Query: 112 CELCDICIFCSMFCAVWVRS 53
C LCD +FC FC + +RS
Sbjct: 217 CRLCDNYLFCLKFCDLRIRS 236
>SB_29727| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 141
Score = 28.3 bits (60), Expect = 2.6
Identities = 10/20 (50%), Positives = 13/20 (65%)
Frame = -2
Query: 112 CELCDICIFCSMFCAVWVRS 53
C LCD +FC FC + +RS
Sbjct: 78 CRLCDNYLFCLKFCDLRIRS 97
>SB_40225| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1442
Score = 27.9 bits (59), Expect = 3.4
Identities = 10/23 (43%), Positives = 14/23 (60%)
Frame = +1
Query: 256 LECADCKVRSQVALKRCKHFELG 324
+EC +CK R +A C HF+ G
Sbjct: 1113 IECPNCKFRYDLAKGGCMHFKCG 1135
>SB_20037| Best HMM Match : 7tm_1 (HMM E-Value=3.09687e-43)
Length = 453
Score = 27.9 bits (59), Expect = 3.4
Identities = 12/40 (30%), Positives = 20/40 (50%)
Frame = -1
Query: 353 IICPFLFLSPPSSKCLQRFRATCDLTLQSAHSRRSTIFFV 234
++ FL L P C++ FR T +QS + I+F+
Sbjct: 262 VVFSFLVLFGPPGLCMKHFRFTSQFLVQSNSAMNFFIYFI 301
>SB_17270| Best HMM Match : ABC_tran (HMM E-Value=5.1e-08)
Length = 771
Score = 27.5 bits (58), Expect = 4.5
Identities = 14/36 (38%), Positives = 19/36 (52%)
Frame = -2
Query: 343 PSSSCHHQAQSAYNASGPPVTSPCSLHIPDEVQFSL 236
PSS+ + SAYN S ++P + PD QF L
Sbjct: 21 PSSALTREMCSAYNVSSANSSTPTNSSSPDGGQFGL 56
>SB_23929| Best HMM Match : PT (HMM E-Value=0.21)
Length = 125
Score = 27.1 bits (57), Expect = 5.9
Identities = 9/20 (45%), Positives = 13/20 (65%)
Frame = -2
Query: 112 CELCDICIFCSMFCAVWVRS 53
C LCD +FC FC + ++S
Sbjct: 62 CRLCDDYLFCLKFCDLRIKS 81
>SB_2961| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 120
Score = 27.1 bits (57), Expect = 5.9
Identities = 9/20 (45%), Positives = 13/20 (65%)
Frame = -2
Query: 112 CELCDICIFCSMFCAVWVRS 53
C LCD +FC FC + ++S
Sbjct: 52 CRLCDDYLFCLKFCDLRIKS 71
>SB_42699| Best HMM Match : SIR2 (HMM E-Value=1.6e-12)
Length = 501
Score = 26.6 bits (56), Expect = 7.8
Identities = 11/21 (52%), Positives = 13/21 (61%)
Frame = +1
Query: 130 KSKERHAAQGRRRYDRKQQGY 192
K K+RHA Q YD+K Q Y
Sbjct: 471 KQKDRHARQLGINYDKKHQNY 491
>SB_30079| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 877
Score = 26.6 bits (56), Expect = 7.8
Identities = 10/20 (50%), Positives = 14/20 (70%)
Frame = +1
Query: 280 RSQVALKRCKHFELGGDKKR 339
+S++A RC H LGGD +R
Sbjct: 495 QSRIASPRCAHRPLGGDSRR 514
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,225,492
Number of Sequences: 59808
Number of extensions: 206418
Number of successful extensions: 485
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 478
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 484
length of database: 16,821,457
effective HSP length: 75
effective length of database: 12,335,857
effective search space used: 740151420
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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