Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0001_J08
(407 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z50109-2|CAA90434.1| 105|Caenorhabditis elegans Hypothetical pr... 127 3e-30
AF304121-1|AAG50234.1| 105|Caenorhabditis elegans 60S ribosomal... 127 3e-30
U43282-2|AAY86313.1| 73|Caenorhabditis elegans Hypothetical pr... 28 3.0
Z83316-7|CAB05890.1| 134|Caenorhabditis elegans Hypothetical pr... 27 3.9
Z11126-4|CAA77472.2| 180|Caenorhabditis elegans Hypothetical pr... 27 5.2
L23646-1|AAA28041.1| 244|Caenorhabditis elegans Hypothetical pr... 27 6.9
AC006680-5|AAK72301.2| 300|Caenorhabditis elegans Serpentine re... 27 6.9
U29244-15|AAC71096.2| 471|Caenorhabditis elegans Hypothetical p... 26 9.1
AF101307-1|AAK84528.2| 294|Caenorhabditis elegans Serpentine re... 26 9.1
AF022983-8|AAB69948.3| 294|Caenorhabditis elegans Serpentine re... 26 9.1
>Z50109-2|CAA90434.1| 105|Caenorhabditis elegans Hypothetical
protein C09H10.2 protein.
Length = 105
Score = 127 bits (307), Expect = 3e-30
Identities = 60/105 (57%), Positives = 71/105 (67%), Gaps = 1/105 (0%)
Frame = +1
Query: 49 MVNVPKQRRTYXXXX-XXXXXXXXSQYKKSKERHAAQGRRRYDRKQQGYGGQSKPIFXXX 225
MVNVPK RRT+ +QYKK KE AQGRRRYDRKQ G+GGQ+KPIF
Sbjct: 1 MVNVPKARRTFCDGKCRKHTNHKVTQYKKGKESKFAQGRRRYDRKQSGFGGQTKPIFRKK 60
Query: 226 XXXXXXIVLRLECADCKVRSQVALKRCKHFELGGDKKRKGQMIQF 360
IVLR+EC +CK + Q+ +KRCKHFELGG KK +GQ+IQF
Sbjct: 61 AKTTKKIVLRMECTECKHKKQLPIKRCKHFELGGQKKSRGQVIQF 105
>AF304121-1|AAG50234.1| 105|Caenorhabditis elegans 60S ribosomal
protein L44 L41 protein.
Length = 105
Score = 127 bits (307), Expect = 3e-30
Identities = 60/105 (57%), Positives = 71/105 (67%), Gaps = 1/105 (0%)
Frame = +1
Query: 49 MVNVPKQRRTYXXXX-XXXXXXXXSQYKKSKERHAAQGRRRYDRKQQGYGGQSKPIFXXX 225
MVNVPK RRT+ +QYKK KE AQGRRRYDRKQ G+GGQ+KPIF
Sbjct: 1 MVNVPKARRTFCDGKCRKHTNHKVTQYKKGKESKFAQGRRRYDRKQSGFGGQTKPIFRKK 60
Query: 226 XXXXXXIVLRLECADCKVRSQVALKRCKHFELGGDKKRKGQMIQF 360
IVLR+EC +CK + Q+ +KRCKHFELGG KK +GQ+IQF
Sbjct: 61 AKTTKKIVLRMECTECKHKKQLPIKRCKHFELGGQKKSRGQVIQF 105
>U43282-2|AAY86313.1| 73|Caenorhabditis elegans Hypothetical
protein T22E5.7 protein.
Length = 73
Score = 27.9 bits (59), Expect = 3.0
Identities = 11/38 (28%), Positives = 22/38 (57%)
Frame = -2
Query: 349 FVPSSSCHHQAQSAYNASGPPVTSPCSLHIPDEVQFSL 236
F+ + + ++ + +G P+T PCS+ + +E FSL
Sbjct: 10 FIRRQTDDGEMKAYWGKAGAPITLPCSISLFNEESFSL 47
>Z83316-7|CAB05890.1| 134|Caenorhabditis elegans Hypothetical
protein B0379.6 protein.
Length = 134
Score = 27.5 bits (58), Expect = 3.9
Identities = 11/28 (39%), Positives = 13/28 (46%)
Frame = +3
Query: 186 GLWWSIQTHLQKEGKNYKENCTSSGMCR 269
GLW + HL K G+ NC G R
Sbjct: 48 GLWRQKRAHLMKGGRRLTRNCVGCGGSR 75
>Z11126-4|CAA77472.2| 180|Caenorhabditis elegans Hypothetical
protein ZK643.6 protein.
Length = 180
Score = 27.1 bits (57), Expect = 5.2
Identities = 11/31 (35%), Positives = 15/31 (48%)
Frame = -2
Query: 127 CTETLCELCDICIFCSMFCAVWVRSPFLRLF 35
C +T C C+IC + C +WV F F
Sbjct: 134 CPKT-CNACNICEDANKMCPIWVPRGFCSKF 163
>L23646-1|AAA28041.1| 244|Caenorhabditis elegans Hypothetical
protein F44E2.3 protein.
Length = 244
Score = 26.6 bits (56), Expect = 6.9
Identities = 10/29 (34%), Positives = 18/29 (62%)
Frame = +1
Query: 250 LRLECADCKVRSQVALKRCKHFELGGDKK 336
+ +E A+CK R + + K+CK E ++K
Sbjct: 152 MAVELAECKKRDEESRKKCKQLEAELERK 180
>AC006680-5|AAK72301.2| 300|Caenorhabditis elegans Serpentine
receptor, class x protein60 protein.
Length = 300
Score = 26.6 bits (56), Expect = 6.9
Identities = 15/37 (40%), Positives = 18/37 (48%)
Frame = -2
Query: 130 FCTETLCELCDICIFCSMFCAVWVRSPFLRLFSTATT 20
FC E L L I + FCAVWV + + FS T
Sbjct: 85 FCYE-LSVLTHFLISINRFCAVWVPLKYEKWFSRKNT 120
>U29244-15|AAC71096.2| 471|Caenorhabditis elegans Hypothetical
protein ZK1248.15 protein.
Length = 471
Score = 26.2 bits (55), Expect = 9.1
Identities = 15/37 (40%), Positives = 19/37 (51%)
Frame = +2
Query: 56 TYPNSAEHTAKNANVTKFTKCLSTKSLRKGTPLRAED 166
TYP+S +++N NV K TK S R PL D
Sbjct: 426 TYPSSTYQSSQNGNVVKTTK---PNSNRPKIPLSLSD 459
>AF101307-1|AAK84528.2| 294|Caenorhabditis elegans Serpentine
receptor, class x protein31 protein.
Length = 294
Score = 26.2 bits (55), Expect = 9.1
Identities = 10/34 (29%), Positives = 20/34 (58%)
Frame = -2
Query: 115 LCELCDICIFCSMFCAVWVRSPFLRLFSTATTLV 14
+ L + I + FCA++++ + R+FS T+V
Sbjct: 89 ISNLSHLTIAMNRFCAMYIQHRYERIFSKTNTMV 122
>AF022983-8|AAB69948.3| 294|Caenorhabditis elegans Serpentine
receptor, class x protein32 protein.
Length = 294
Score = 26.2 bits (55), Expect = 9.1
Identities = 10/34 (29%), Positives = 20/34 (58%)
Frame = -2
Query: 115 LCELCDICIFCSMFCAVWVRSPFLRLFSTATTLV 14
+ L + I + FCA++++ + R+FS T+V
Sbjct: 89 ISNLSHLTIAMNRFCAMYIQHRYERIFSKTNTMV 122
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,209,939
Number of Sequences: 27780
Number of extensions: 147403
Number of successful extensions: 444
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 436
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 442
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 651753158
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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