Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_J08
         (407 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g14320.1 68417.m02206 60S ribosomal protein L36a/L44 (RPL36aB)     115   1e-26
At3g23390.1 68416.m02949 60S ribosomal protein L36a/L44 (RPL36aA...   115   1e-26
At3g14050.1 68416.m01773 RelA/SpoT protein, putative (RSH2) near...    30   0.69 
At5g53800.1 68418.m06685 expressed protein                             28   2.1  
At5g51230.2 68418.m06353 embryonic flower 2 (EMF2) identical to ...    26   8.5  
At5g51230.1 68418.m06352 embryonic flower 2 (EMF2) identical to ...    26   8.5  
At5g49230.1 68418.m06094 drought-responsive family protein simil...    26   8.5  

>At4g14320.1 68417.m02206 60S ribosomal protein L36a/L44 (RPL36aB)
          Length = 105

 Score =  115 bits (277), Expect = 1e-26
 Identities = 55/101 (54%), Positives = 65/101 (64%), Gaps = 2/101 (1%)
 Frame = +1

Query: 49  MVNVPKQRRTYXXXXX--XXXXXXXSQYKKSKERHAAQGRRRYDRKQQGYGGQSKPIFXX 222
           MVN+PK + TY              +QYKK K+  AAQG+RRYDRKQ GYGGQ+KP+F  
Sbjct: 1   MVNIPKTKNTYCKNKECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHK 60

Query: 223 XXXXXXXIVLRLECADCKVRSQVALKRCKHFELGGDKKRKG 345
                  IVLRL+C  CK  SQ  +KRCKHFE+GGDKK KG
Sbjct: 61  KAKTTKKIVLRLQCQSCKHFSQRPIKRCKHFEIGGDKKGKG 101


>At3g23390.1 68416.m02949 60S ribosomal protein L36a/L44 (RPL36aA)
           similar to ribosomal protein L41 GB:AAA34366 from
           [Candida maltosa]
          Length = 105

 Score =  115 bits (277), Expect = 1e-26
 Identities = 55/101 (54%), Positives = 65/101 (64%), Gaps = 2/101 (1%)
 Frame = +1

Query: 49  MVNVPKQRRTYXXXXX--XXXXXXXSQYKKSKERHAAQGRRRYDRKQQGYGGQSKPIFXX 222
           MVN+PK + TY              +QYKK K+  AAQG+RRYDRKQ GYGGQ+KP+F  
Sbjct: 1   MVNIPKTKNTYCKNKECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHK 60

Query: 223 XXXXXXXIVLRLECADCKVRSQVALKRCKHFELGGDKKRKG 345
                  IVLRL+C  CK  SQ  +KRCKHFE+GGDKK KG
Sbjct: 61  KAKTTKKIVLRLQCQSCKHFSQRPIKRCKHFEIGGDKKGKG 101


>At3g14050.1 68416.m01773 RelA/SpoT protein, putative (RSH2) nearly
           identical to RelA/SpoT homolog RSH2 [Arabidopsis
           thaliana] GI:7141306; contains Pfam profiles PF01966: HD
           domain, PF04607: Region found in RelA / SpoT proteins
          Length = 709

 Score = 29.9 bits (64), Expect = 0.69
 Identities = 14/31 (45%), Positives = 18/31 (58%)
 Frame = -1

Query: 338 LFLSPPSSKCLQRFRATCDLTLQSAHSRRST 246
           L+ SPPSS C    + +CDL L S  S  S+
Sbjct: 9   LYASPPSSVCSTPHQISCDLDLTSRSSSTSS 39


>At5g53800.1 68418.m06685 expressed protein
          Length = 351

 Score = 28.3 bits (60), Expect = 2.1
 Identities = 14/50 (28%), Positives = 22/50 (44%)
 Frame = +1

Query: 37  TDVKMVNVPKQRRTYXXXXXXXXXXXXSQYKKSKERHAAQGRRRYDRKQQ 186
           +D K     ++RR Y            S+Y  S+E  +   RRR  RK++
Sbjct: 89  SDRKSSRSRRRRRDYSSSSSDSESESESEYSDSEESESEDERRRRKRKRK 138


>At5g51230.2 68418.m06353 embryonic flower 2 (EMF2) identical to
           embryonic flower 2 [Arabidopsis thaliana] GI:14276050;
           supporting cDNA gi|14276049|dbj|AB053171.1|
          Length = 626

 Score = 26.2 bits (55), Expect = 8.5
 Identities = 10/28 (35%), Positives = 18/28 (64%)
 Frame = +1

Query: 277 VRSQVALKRCKHFELGGDKKRKGQMIQF 360
           +R+ + L+RC H+++    KR+ QM  F
Sbjct: 60  IRNPLFLQRCLHYKIEAKHKRRIQMTVF 87


>At5g51230.1 68418.m06352 embryonic flower 2 (EMF2) identical to
           embryonic flower 2 [Arabidopsis thaliana] GI:14276050;
           supporting cDNA gi|14276049|dbj|AB053171.1|
          Length = 631

 Score = 26.2 bits (55), Expect = 8.5
 Identities = 10/28 (35%), Positives = 18/28 (64%)
 Frame = +1

Query: 277 VRSQVALKRCKHFELGGDKKRKGQMIQF 360
           +R+ + L+RC H+++    KR+ QM  F
Sbjct: 60  IRNPLFLQRCLHYKIEAKHKRRIQMTVF 87


>At5g49230.1 68418.m06094 drought-responsive family protein similar
           to drought-induced mRNA, Di19 [Arabidopsis thaliana]
           gi|469110|emb|CAA55321
          Length = 211

 Score = 26.2 bits (55), Expect = 8.5
 Identities = 13/29 (44%), Positives = 19/29 (65%)
 Frame = -1

Query: 359 NWIICPFLFLSPPSSKCLQRFRATCDLTL 273
           +WI CP +F S PSS+   R+++  DL L
Sbjct: 5   SWINCPPVFSSSPSSR---RYQSRSDLYL 30


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,659,634
Number of Sequences: 28952
Number of extensions: 133307
Number of successful extensions: 331
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 324
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 329
length of database: 12,070,560
effective HSP length: 74
effective length of database: 9,928,112
effective search space used: 605614832
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)