Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_J07
         (443 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC521.04c |||calcium permease |Schizosaccharomyces pombe|chr 1...    26   2.3  
SPCC1223.04c |mug76||lysine methyltransferase |Schizosaccharomyc...    26   3.0  
SPBC29A10.10c |||tRNA-splicing endonuclease positive effector |S...    25   5.2  
SPAC24C9.07c |bgs2|meu21, pgs2|1,3-beta-glucan synthase subunit ...    25   5.2  
SPAC1142.05 |ctr5||copper transporter complex subunit Ctr5 |Schi...    24   9.1  
SPBC2F12.15c |||palmitoyltransferase|Schizosaccharomyces pombe|c...    24   9.1  
SPBC1861.09 |ppk22||serine/threonine protein kinase Ppk22 |Schiz...    24   9.1  

>SPAC521.04c |||calcium permease |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 881

 Score = 26.2 bits (55), Expect = 2.3
 Identities = 10/29 (34%), Positives = 17/29 (58%)
 Frame = -2

Query: 274 FGFFFLCHLIVFLLSVQKPPNIILYRRLC 188
           F   F+C++   +LS    P+ I+Y +LC
Sbjct: 210 FLVIFICYIFFTVLSFFNVPDAIVYSKLC 238


>SPCC1223.04c |mug76||lysine methyltransferase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 381

 Score = 25.8 bits (54), Expect = 3.0
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = -2

Query: 220 PPNIILYRRLCFRLNTIDMWSKIQF 146
           PPNI++ +R C R +  D  +  QF
Sbjct: 53  PPNILINKRTCSRYSFRDKLTSFQF 77


>SPBC29A10.10c |||tRNA-splicing endonuclease positive effector
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1944

 Score = 25.0 bits (52), Expect = 5.2
 Identities = 7/16 (43%), Positives = 11/16 (68%)
 Frame = -3

Query: 75  CIILFSFNRNKFYIIW 28
           C+ LFSF  +  Y++W
Sbjct: 59  CLFLFSFQNDNEYLVW 74


>SPAC24C9.07c |bgs2|meu21, pgs2|1,3-beta-glucan synthase subunit
            Bgs2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1894

 Score = 25.0 bits (52), Expect = 5.2
 Identities = 8/11 (72%), Positives = 11/11 (100%)
 Frame = -2

Query: 265  FFLCHLIVFLL 233
            FFLCHL++FL+
Sbjct: 1779 FFLCHLLLFLM 1789


>SPAC1142.05 |ctr5||copper transporter complex subunit Ctr5
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 173

 Score = 24.2 bits (50), Expect = 9.1
 Identities = 12/46 (26%), Positives = 22/46 (47%)
 Frame = -1

Query: 383 LNCALKLYFLKCCTHKMTFNRTKTKE*FN*YYLQVTIRIFFSMSFN 246
           L+  L+++F     H   + +      ++ +YL  TI +   MSFN
Sbjct: 92  LSGPLRIFFPSSTVHVTVWQQLIRAAMYSSFYLSATILMLIVMSFN 137


>SPBC2F12.15c |||palmitoyltransferase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 329

 Score = 24.2 bits (50), Expect = 9.1
 Identities = 9/34 (26%), Positives = 19/34 (55%)
 Frame = -3

Query: 129 RVTSLCVIILPVIFK*CLCIILFSFNRNKFYIIW 28
           +V+++C  +L ++ K C+ II  S      ++ W
Sbjct: 6   KVSTICQCVLVILAKYCMQIIALSLMSGVQWLAW 39


>SPBC1861.09 |ppk22||serine/threonine protein kinase Ppk22
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 526

 Score = 24.2 bits (50), Expect = 9.1
 Identities = 12/39 (30%), Positives = 19/39 (48%)
 Frame = -2

Query: 253 HLIVFLLSVQKPPNIILYRRLCFRLNTIDMWSKIQFFCH 137
           HL+ F+    KP NI+L++     L+  D+   I    H
Sbjct: 272 HLMGFIYRDLKPENILLHQSGHIMLSDFDLSKPISIVTH 310


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,574,077
Number of Sequences: 5004
Number of extensions: 28488
Number of successful extensions: 57
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 57
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 57
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 162176800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)