Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_J07
         (443 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_56576| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   1.7  
SB_31699| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.0  

>SB_56576| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 658

 Score = 29.1 bits (62), Expect = 1.7
 Identities = 17/54 (31%), Positives = 27/54 (50%), Gaps = 1/54 (1%)
 Frame = -1

Query: 284 QVTIRIFFSMSFNCVLVISTETS-EYYFI*KTMF*TEYY*YVVQNSVLLSRKLG 126
           Q  I++  ++   C  +IS  T   +YF  K  F   +Y ++ QN V  S K+G
Sbjct: 308 QNIIKLTANLVLYCTEIISVSTDPRFYFAWKQSFGGLFYQFIGQNIVASSNKIG 361


>SB_31699| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 6119

 Score = 27.1 bits (57), Expect = 7.0
 Identities = 14/27 (51%), Positives = 17/27 (62%)
 Frame = -3

Query: 432  MYVFYIKYLILVLYQCFKLRIKIIFFK 352
            MY    K+LILV+    K+  KIIFFK
Sbjct: 6082 MYSQKAKWLILVVQSMSKITNKIIFFK 6108


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,707,414
Number of Sequences: 59808
Number of extensions: 184660
Number of successful extensions: 377
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 309
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 377
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 871599479
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)