Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_J07
         (443 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g23130.2 68417.m03334 receptor-like protein kinase 6 (RLK6) i...    28   2.5  
At4g23130.1 68417.m03333 receptor-like protein kinase 6 (RLK6) i...    28   2.5  
At5g48657.1 68418.m06020 defense protein-related weak similarity...    27   7.5  
At1g05200.1 68414.m00524 glutamate receptor family protein (GLR3...    26   10.0 

>At4g23130.2 68417.m03334 receptor-like protein kinase 6 (RLK6)
           identical to receptor-like protein kinase 6 [Arabidopsis
           thaliana] GI:13506749; contains Pfam domain PF00069:
           Protein kinase domain
          Length = 663

 Score = 28.3 bits (60), Expect = 2.5
 Identities = 12/43 (27%), Positives = 21/43 (48%)
 Frame = -3

Query: 171 LICGPKFSSSVTKVRVTSLCVIILPVIFK*CLCIILFSFNRNK 43
           L+  P F     K     +  I++PV     +C+ +FSF+ +K
Sbjct: 264 LVSTPSFPPGKGKNSTVIIIAIVVPVAISVLICVAVFSFHASK 306


>At4g23130.1 68417.m03333 receptor-like protein kinase 6 (RLK6)
           identical to receptor-like protein kinase 6 [Arabidopsis
           thaliana] GI:13506749; contains Pfam domain PF00069:
           Protein kinase domain
          Length = 659

 Score = 28.3 bits (60), Expect = 2.5
 Identities = 12/43 (27%), Positives = 21/43 (48%)
 Frame = -3

Query: 171 LICGPKFSSSVTKVRVTSLCVIILPVIFK*CLCIILFSFNRNK 43
           L+  P F     K     +  I++PV     +C+ +FSF+ +K
Sbjct: 264 LVSTPSFPPGKGKNSTVIIIAIVVPVAISVLICVAVFSFHASK 306


>At5g48657.1 68418.m06020 defense protein-related weak similarity to
           SP|Q8GYN5 RPM1-interacting protein 4 {Arabidopsis
           thaliana}
          Length = 245

 Score = 26.6 bits (56), Expect = 7.5
 Identities = 19/65 (29%), Positives = 30/65 (46%)
 Frame = -3

Query: 225 RNLRILFYIEDYVLD*ILLICGPKFSSSVTKVRVTSLCVIILPVIFK*CLCIILFSFNRN 46
           +N+  L +I    L   LL  G  FSS   K ++  + + +  +I    +C  L  FN N
Sbjct: 179 QNIISLSFINPLFLQLTLLCVGLLFSSMEPKGKLMKMIISLFYIILFFFICFCLIFFN-N 237

Query: 45  KFYII 31
            F I+
Sbjct: 238 IFVIL 242


>At1g05200.1 68414.m00524 glutamate receptor family protein (GLR3.4)
           plant glutamate receptor family, PMID:11379626
          Length = 959

 Score = 26.2 bits (55), Expect = 10.0
 Identities = 14/32 (43%), Positives = 17/32 (53%)
 Frame = -3

Query: 147 SSVTKVRVTSLCVIILPVIFK*CLCIILFSFN 52
           S    +RV  LCV +L V+ K C C   FS N
Sbjct: 11  SMAKAIRVVLLCVSVLWVVPKECACRSNFSRN 42


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,558,379
Number of Sequences: 28952
Number of extensions: 128416
Number of successful extensions: 250
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 245
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 250
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 712739520
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)