Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_J06
         (492 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC887.18c |||transcription adaptor protein |Schizosaccharomyce...    29   0.50 
SPCC1281.01 |ags1|mok1, SPCC338.01c, SPCC17A7.01|alpha-1,4-gluca...    28   0.66 
SPAC15A10.11 |ubr11||N-end-recognizing protein |Schizosaccharomy...    27   1.2  
SPCC645.05c |myo2|rng5|myosin II heavy chain|Schizosaccharomyces...    27   2.0  
SPBC56F2.04 |utp20||U3 snoRNP protein Utp20|Schizosaccharomyces ...    25   4.7  
SPBC725.05c |||nucleotide pyrophosphatase |Schizosaccharomyces p...    25   4.7  
SPAC56E4.05 |mug69||DUF788 family protein|Schizosaccharomyces po...    25   6.2  
SPBC2G2.06c |apl1||AP-2 adaptor complex subunit Apl1 |Schizosacc...    25   8.2  
SPAC12G12.15 |sif3||Sad1 interacting factor 3|Schizosaccharomyce...    25   8.2  

>SPBC887.18c |||transcription adaptor protein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 339

 Score = 28.7 bits (61), Expect = 0.50
 Identities = 22/55 (40%), Positives = 27/55 (49%), Gaps = 2/55 (3%)
 Frame = +3

Query: 252 LVNAKKYNFDNLENSISEHDEVNSKKFNPDWKDLDTRKLPEWYDRAKI--GIFLH 410
           L  A K NFD L NSI  H     +K N  +  L    LP W+ R K+   +FLH
Sbjct: 64  LTFAGKSNFDKLHNSIIFHILKLMQKNNDTFSAL--HHLP-WFKRKKVDNSLFLH 115


>SPCC1281.01 |ags1|mok1, SPCC338.01c, SPCC17A7.01|alpha-1,4-glucan
            synthase Ags1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 2410

 Score = 28.3 bits (60), Expect = 0.66
 Identities = 12/33 (36%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
 Frame = +3

Query: 360  RKLPEWYDRAKIGIFLHWGVYSVPSYG-SEWFW 455
            R L +++  + IG++L W  YS P  G + W W
Sbjct: 2275 RWLQQFWATSNIGLYLPWAGYSGPYLGRTLWLW 2307


>SPAC15A10.11 |ubr11||N-end-recognizing protein |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 2052

 Score = 27.5 bits (58), Expect = 1.2
 Identities = 17/50 (34%), Positives = 27/50 (54%), Gaps = 5/50 (10%)
 Frame = -3

Query: 346  FQSGLNFLEFTSSCSDIEFSRLSKLYFL-----AFTKYTSDNNMNILMIL 212
            F   L F EF+++  D E  RLSKL  +      +++ +SD N  IL ++
Sbjct: 1824 FDISLEFNEFSNNEDDSELERLSKLIKVPPLQELYSQMSSDENNQILELI 1873


>SPCC645.05c |myo2|rng5|myosin II heavy chain|Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 1526

 Score = 26.6 bits (56), Expect = 2.0
 Identities = 10/27 (37%), Positives = 17/27 (62%)
 Frame = +3

Query: 285  LENSISEHDEVNSKKFNPDWKDLDTRK 365
            L N +++H+ + SK    + K +DTRK
Sbjct: 1325 LRNKVADHESIRSKLSEVEMKLVDTRK 1351


>SPBC56F2.04 |utp20||U3 snoRNP protein Utp20|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 2493

 Score = 25.4 bits (53), Expect = 4.7
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = -3

Query: 328  FLEFTSSCSDIEFSRLSKLYFLAF 257
            FL F  SCSD++F   +   + AF
Sbjct: 1060 FLLFLKSCSDVDFKPYNVFIYTAF 1083


>SPBC725.05c |||nucleotide pyrophosphatase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 485

 Score = 25.4 bits (53), Expect = 4.7
 Identities = 10/28 (35%), Positives = 14/28 (50%)
 Frame = +3

Query: 378 YDRAKIGIFLHWGVYSVPSYGSEWFWSN 461
           Y R+ +    +W VYS     S W +SN
Sbjct: 339 YSRSSLPSAENWNVYSKKDIPSRWHYSN 366


>SPAC56E4.05 |mug69||DUF788 family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 192

 Score = 25.0 bits (52), Expect = 6.2
 Identities = 8/15 (53%), Positives = 11/15 (73%)
 Frame = +1

Query: 25  RAFVFYLLVPVLIFY 69
           + F FYLLVP+ + Y
Sbjct: 114 KVFAFYLLVPIFVVY 128


>SPBC2G2.06c |apl1||AP-2 adaptor complex subunit Apl1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 677

 Score = 24.6 bits (51), Expect = 8.2
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = +3

Query: 294 SISEHDEVNSKKFNPDWKDLDTRKLPEWYDR 386
           S ++  E N KK+N   +   TR++ E YDR
Sbjct: 606 SNTDSRESNHKKYNHFHQKSQTRRVMEQYDR 636


>SPAC12G12.15 |sif3||Sad1 interacting factor 3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 510

 Score = 24.6 bits (51), Expect = 8.2
 Identities = 15/60 (25%), Positives = 30/60 (50%)
 Frame = +3

Query: 279 DNLENSISEHDEVNSKKFNPDWKDLDTRKLPEWYDRAKIGIFLHWGVYSVPSYGSEWFWS 458
           D++ +S S H++ +     PD ++ D+  + + Y  ++I +F         SYG   FW+
Sbjct: 203 DDMPSSASNHNQKHLDSDKPDNENFDSHIISQLYRISEIFVF---------SYGVVVFWN 253


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,013,942
Number of Sequences: 5004
Number of extensions: 41317
Number of successful extensions: 137
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 132
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 137
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 192109570
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)