Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0001_J06
(492 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_03_0403 - 13534954-13535462,13537895-13538050,13538545-13538644 36 0.013
03_02_0387 - 8016399-8016575,8016661-8016788,8017073-8017214,801... 29 2.0
12_01_0268 - 1941515-1941534,1941868-1942057,1942155-1942322,194... 28 4.7
11_01_0628 + 5052042-5052863,5053232-5053475,5054136-5054155 28 4.7
05_04_0085 + 17790417-17790714,17791826-17791869,17793658-177937... 27 6.2
03_05_1096 - 30364144-30365310,30365825-30365971,30366087-303663... 27 6.2
01_06_0112 + 26558618-26558778,26565370-26565580,26565665-265658... 27 8.2
>05_03_0403 - 13534954-13535462,13537895-13538050,13538545-13538644
Length = 254
Score = 36.3 bits (80), Expect = 0.013
Identities = 17/64 (26%), Positives = 37/64 (57%), Gaps = 3/64 (4%)
Frame = +3
Query: 177 QDIIIKNAFRYHRIMRIFILLSLVYLVNAKKYNFDNLENSI---SEHDEVNSKKFNPDWK 347
Q +++ F++H+ MR+F L +++L +K ++ + + SE +E ++ +F W+
Sbjct: 38 QPLVVPQLFKFHKFMRLFTLQEMLFL-RRRKSKWEQQQEEVELFSEEEECSTTRF---WR 93
Query: 348 DLDT 359
D DT
Sbjct: 94 DPDT 97
>03_02_0387 -
8016399-8016575,8016661-8016788,8017073-8017214,
8017301-8017396,8017572-8017712,8017857-8018031,
8018443-8018575,8018661-8018733,8018807-8018900,
8019890-8019981,8020091-8020185,8020267-8020378
Length = 485
Score = 29.1 bits (62), Expect = 2.0
Identities = 21/67 (31%), Positives = 32/67 (47%), Gaps = 3/67 (4%)
Frame = -3
Query: 415 PQCKNIPILALSYHSGNFRVSKSFQSGLNFL-EFTSSCSDIEFSR--LSKLYFLAFTKYT 245
P + + A+SY GN V +S ++FL + S +E S LS + FL K T
Sbjct: 352 PYLASAAVSAVSYLEGNPSVLADLRSNISFLHKELSGTPGLEISSHVLSPIVFLKLKKST 411
Query: 244 SDNNMNI 224
+N +I
Sbjct: 412 GSSNTDI 418
>12_01_0268 -
1941515-1941534,1941868-1942057,1942155-1942322,
1943425-1943568,1944284-1944443,1944512-1944621,
1944900-1945019,1945649-1945766,1946610-1946729,
1947228-1947285,1947590-1947723,1949332-1949414,
1949544-1949786,1949851-1949976,1950075-1951562
Length = 1093
Score = 27.9 bits (59), Expect = 4.7
Identities = 21/73 (28%), Positives = 32/73 (43%), Gaps = 2/73 (2%)
Frame = -3
Query: 421 YTPQCKNIPILALSYHSGNFRVSKSFQSGLNFLEFTSSCSDIEFS-RLSKLYFLAFT-KY 248
+ C NI L L Y+ GN R+ T +IE + L KL AF KY
Sbjct: 402 FVEACPNIRELHLGYYDGNVRIRSDKLEIFQVWCSTMKSVNIEHAPELRKLTIAAFPGKY 461
Query: 247 TSDNNMNILMILW 209
+S ++ ++ L+
Sbjct: 462 SSSLSVRVINSLY 474
>11_01_0628 + 5052042-5052863,5053232-5053475,5054136-5054155
Length = 361
Score = 27.9 bits (59), Expect = 4.7
Identities = 20/68 (29%), Positives = 33/68 (48%), Gaps = 1/68 (1%)
Frame = -3
Query: 415 PQCKNIPILAL-SYHSGNFRVSKSFQSGLNFLEFTSSCSDIEFSRLSKLYFLAFTKYTSD 239
P C + L L S H +S + +FL F SSC +++ + + YF + TK TS
Sbjct: 130 PYCHELDELPLVSQHLTRLELSGLILND-SFLNF-SSCLALDYLEIVQCYFSSLTKITSQ 187
Query: 238 NNMNILMI 215
+ + +I
Sbjct: 188 SLKRLRII 195
>05_04_0085 +
17790417-17790714,17791826-17791869,17793658-17793793,
17794315-17794391,17794646-17794706,17794707-17794924,
17795168-17795412,17796032-17796401,17796916-17797344
Length = 625
Score = 27.5 bits (58), Expect = 6.2
Identities = 10/25 (40%), Positives = 15/25 (60%)
Frame = +3
Query: 369 PEWYDRAKIGIFLHWGVYSVPSYGS 443
PEW +RA+ + H+G + P Y S
Sbjct: 453 PEWQERAREEVLHHFGRTTTPDYDS 477
>03_05_1096 -
30364144-30365310,30365825-30365971,30366087-30366393,
30366541-30366849,30367544-30370567,30370640-30372290,
30372373-30373463,30373544-30373646,30373737-30374439,
30374654-30375783,30375913-30376027,30376504-30376695,
30377443-30377616,30378438-30378494,30378581-30378716,
30378842-30378927,30379023-30379092,30379993-30380021,
30380444-30380456,30380762-30381006
Length = 3582
Score = 27.5 bits (58), Expect = 6.2
Identities = 14/70 (20%), Positives = 36/70 (51%)
Frame = +3
Query: 159 SSILNMQDIIIKNAFRYHRIMRIFILLSLVYLVNAKKYNFDNLENSISEHDEVNSKKFNP 338
S++L ++++ ++ IL L+Y++N+ ++ + S EV++ + +
Sbjct: 200 SNLLYAVEVLVTQTIDKQPLLDSGILCCLIYILNSLLSPDESSQKSSPVGQEVSTSEKSK 259
Query: 339 DWKDLDTRKL 368
DW + +R+L
Sbjct: 260 DWGPMLSRRL 269
>01_06_0112 +
26558618-26558778,26565370-26565580,26565665-26565826,
26566650-26566874,26566960-26567073
Length = 290
Score = 27.1 bits (57), Expect = 8.2
Identities = 11/32 (34%), Positives = 15/32 (46%)
Frame = +3
Query: 360 RKLPEWYDRAKIGIFLHWGVYSVPSYGSEWFW 455
RKL + G+ L W VY +Y +FW
Sbjct: 222 RKLTIFVRAVDAGVTLFWAVYCAYNYDHSFFW 253
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,682,412
Number of Sequences: 37544
Number of extensions: 213040
Number of successful extensions: 480
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 473
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 480
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1023611560
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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