Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_J06
         (492 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_7747| Best HMM Match : Alpha_L_fucos (HMM E-Value=0)                92   3e-19
SB_20513| Best HMM Match : No HMM Matches (HMM E-Value=.)              88   3e-18
SB_899| Best HMM Match : Alpha_L_fucos (HMM E-Value=0)                 87   1e-17
SB_31446| Best HMM Match : No HMM Matches (HMM E-Value=.)              86   1e-17
SB_31239| Best HMM Match : Alpha_L_fucos (HMM E-Value=2.7e-16)         85   3e-17
SB_729| Best HMM Match : Alpha_L_fucos (HMM E-Value=1.1e-11)           83   9e-17
SB_55050| Best HMM Match : Alpha_L_fucos (HMM E-Value=2.4e-18)         78   5e-15
SB_41684| Best HMM Match : Ferric_reduct (HMM E-Value=0.00026)         32   0.30 
SB_40834| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   3.6  
SB_20267| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.8  
SB_58018| Best HMM Match : RVT_1 (HMM E-Value=1.1)                     27   6.4  
SB_54400| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.4  
SB_51478| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.4  

>SB_7747| Best HMM Match : Alpha_L_fucos (HMM E-Value=0)
          Length = 413

 Score = 91.9 bits (218), Expect = 3e-19
 Identities = 35/55 (63%), Positives = 43/55 (78%), Gaps = 2/55 (3%)
 Frame = +3

Query: 327 KFNPDWKDLDTRKLPEWYDRAKIGIFLHWGVYSVPSYG--SEWFWSNWNGGSLKY 485
           K+ P+W  LDTR LP+WYDRAK GI +HWGVYSVPS+G  +EWFW+ W  GS +Y
Sbjct: 24  KYQPNWDSLDTRPLPDWYDRAKFGIIMHWGVYSVPSFGVAAEWFWNYWKSGSPQY 78


>SB_20513| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 349

 Score = 88.2 bits (209), Expect = 3e-18
 Identities = 32/55 (58%), Positives = 39/55 (70%)
 Frame = +3

Query: 321 SKKFNPDWKDLDTRKLPEWYDRAKIGIFLHWGVYSVPSYGSEWFWSNWNGGSLKY 485
           S  +NP W  LD R +P WYD+AK GIF+HWGV+SVPS+GSEWFW  W+     Y
Sbjct: 35  STHYNPTWNSLDKRPIPAWYDKAKFGIFMHWGVFSVPSFGSEWFWKFWHDKDKPY 89


>SB_899| Best HMM Match : Alpha_L_fucos (HMM E-Value=0)
          Length = 1127

 Score = 86.6 bits (205), Expect = 1e-17
 Identities = 30/46 (65%), Positives = 38/46 (82%)
 Frame = +3

Query: 327 KFNPDWKDLDTRKLPEWYDRAKIGIFLHWGVYSVPSYGSEWFWSNW 464
           K+ P W  LD+R  P WYD+AK G+F+HWGVYSVPS+GSEWFW++W
Sbjct: 22  KYLPSWDSLDSRPDPPWYDKAKFGVFMHWGVYSVPSFGSEWFWNHW 67


>SB_31446| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 227

 Score = 86.2 bits (204), Expect = 1e-17
 Identities = 31/48 (64%), Positives = 37/48 (77%)
 Frame = +3

Query: 327 KFNPDWKDLDTRKLPEWYDRAKIGIFLHWGVYSVPSYGSEWFWSNWNG 470
           ++N  WK LD R LP WYD+AK GIF+HWGV+SVP +GSEWFW  W G
Sbjct: 10  EYNATWKSLDARPLPAWYDQAKFGIFVHWGVFSVPGFGSEWFWYFWKG 57


>SB_31239| Best HMM Match : Alpha_L_fucos (HMM E-Value=2.7e-16)
          Length = 476

 Score = 85.0 bits (201), Expect = 3e-17
 Identities = 38/79 (48%), Positives = 49/79 (62%), Gaps = 5/79 (6%)
 Frame = +3

Query: 252 LVNAKKYNFDNLENSISEHD---EVNSKKF--NPDWKDLDTRKLPEWYDRAKIGIFLHWG 416
           +VN  K  F ++  S  + D   E+N   +   PDW+ LD R LP WY+ AK GIF+HWG
Sbjct: 98  IVNHPKAMFASVIRSQQKDDSYYELNQIPYYSTPDWESLDARPLPSWYEDAKFGIFVHWG 157

Query: 417 VYSVPSYGSEWFWSNWNGG 473
           +YSVP  GSEWFW +W  G
Sbjct: 158 LYSVPGVGSEWFWYHWRQG 176


>SB_729| Best HMM Match : Alpha_L_fucos (HMM E-Value=1.1e-11)
          Length = 155

 Score = 83.4 bits (197), Expect = 9e-17
 Identities = 33/54 (61%), Positives = 40/54 (74%), Gaps = 4/54 (7%)
 Frame = +3

Query: 327 KFNPDWKDLDTRKLPEWYDRAKIGIFLHWGVYSVPSYG----SEWFWSNWNGGS 476
           K+ P W+ LD+R  P WYD+AK GIF+HWG+YSVPSYG    SEWFW  W+ GS
Sbjct: 22  KYLPTWESLDSRPNPGWYDKAKFGIFMHWGLYSVPSYGDGEASEWFWKYWHDGS 75


>SB_55050| Best HMM Match : Alpha_L_fucos (HMM E-Value=2.4e-18)
          Length = 203

 Score = 77.8 bits (183), Expect = 5e-15
 Identities = 31/59 (52%), Positives = 40/59 (67%), Gaps = 7/59 (11%)
 Frame = +3

Query: 321 SKKFNPDWKDLDTRKLPEWYDRAKIGIFLHWGVYSVPSYGS-------EWFWSNWNGGS 476
           + K+ P W  LD+R  P WYD+AK GIF+HWGVYSVPS+G+       EWFW  W+ G+
Sbjct: 22  TSKYLPTWDSLDSRPNPPWYDKAKFGIFMHWGVYSVPSFGAESGGTAGEWFWRYWHDGN 80


>SB_41684| Best HMM Match : Ferric_reduct (HMM E-Value=0.00026)
          Length = 177

 Score = 31.9 bits (69), Expect = 0.30
 Identities = 15/55 (27%), Positives = 29/55 (52%)
 Frame = +3

Query: 186 IIKNAFRYHRIMRIFILLSLVYLVNAKKYNFDNLENSISEHDEVNSKKFNPDWKD 350
           ++  +  +H+ +   I    +  V A  YNF+NL +S S+ +E+++K    D  D
Sbjct: 37  VLDKSITFHKYIAYTICFFTIVHVGAHCYNFENLIDSWSKENEIDAKLSQLDGAD 91


>SB_40834| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1299

 Score = 28.3 bits (60), Expect = 3.6
 Identities = 13/28 (46%), Positives = 16/28 (57%)
 Frame = -3

Query: 136 HFLWNFKNLITINKNNHNH*DRGKILIQ 53
           HF W+  N IT N + HN    G I+IQ
Sbjct: 542 HFEWDNMNKITTNIHGHNVNSTGGIMIQ 569


>SB_20267| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 415

 Score = 27.9 bits (59), Expect = 4.8
 Identities = 11/31 (35%), Positives = 19/31 (61%)
 Frame = +3

Query: 258 NAKKYNFDNLENSISEHDEVNSKKFNPDWKD 350
           N   YN+DN +N+ +++++ N K  N D  D
Sbjct: 208 NDNNYNYDNNDNNDNDNNDNNDKNDNNDNND 238


>SB_58018| Best HMM Match : RVT_1 (HMM E-Value=1.1)
          Length = 386

 Score = 27.5 bits (58), Expect = 6.4
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = +3

Query: 420 YSVPSYGSEWFWSNWNGGSLKY 485
           Y+  +Y  E FWS WN GS  +
Sbjct: 20  YNHQAYLKEQFWSYWNSGSTTF 41


>SB_54400| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 723

 Score = 27.1 bits (57), Expect = 8.4
 Identities = 13/48 (27%), Positives = 24/48 (50%)
 Frame = -3

Query: 364 FRVSKSFQSGLNFLEFTSSCSDIEFSRLSKLYFLAFTKYTSDNNMNIL 221
           ++ +KS+++  N  + T  CS   F   S  +F++   +TS N    L
Sbjct: 47  YQTTKSYEALQNNSKLTWICSSCLFPNFSTTHFMSSLDFTSFNEFTTL 94


>SB_51478| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 213

 Score = 27.1 bits (57), Expect = 8.4
 Identities = 15/50 (30%), Positives = 24/50 (48%), Gaps = 3/50 (6%)
 Frame = +3

Query: 234 LLSLVYLVNAK---KYNFDNLENSISEHDEVNSKKFNPDWKDLDTRKLPE 374
           L  L YL   K   KY+ D + + ++ H  V  +  NP W  +  R+ P+
Sbjct: 144 LCRLDYLFGEKGWYKYSIDVVNDKVTCHLSVTKQPKNPYWPTIGIRETPK 193


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,009,606
Number of Sequences: 59808
Number of extensions: 263544
Number of successful extensions: 606
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 559
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 603
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1050596726
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)