Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_J06
         (492 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z67738-2|CAA91546.2|  482|Caenorhabditis elegans Hypothetical pr...    80   7e-16
AF003132-1|AAB54133.3|  798|Caenorhabditis elegans Hypothetical ...    29   1.8  
Z83219-8|CAD57688.1|  455|Caenorhabditis elegans Hypothetical pr...    27   7.4  
Z83219-7|CAB05698.2|  473|Caenorhabditis elegans Hypothetical pr...    27   7.4  
Z80217-11|CAD57698.1|  455|Caenorhabditis elegans Hypothetical p...    27   7.4  
Z80217-10|CAB02296.2|  473|Caenorhabditis elegans Hypothetical p...    27   7.4  
U70848-1|AAB09107.2|  434|Caenorhabditis elegans Hypothetical pr...    27   9.8  

>Z67738-2|CAA91546.2|  482|Caenorhabditis elegans Hypothetical
           protein W03G11.3 protein.
          Length = 482

 Score = 80.2 bits (189), Expect = 7e-16
 Identities = 28/47 (59%), Positives = 34/47 (72%)
 Frame = +3

Query: 330 FNPDWKDLDTRKLPEWYDRAKIGIFLHWGVYSVPSYGSEWFWSNWNG 470
           + PDW+ LD R LP WYD +K GIF HWG+YSVP++ SEW W  W G
Sbjct: 18  YTPDWESLDNRPLPSWYDDSKFGIFCHWGLYSVPAFRSEWMWWYWKG 64


>AF003132-1|AAB54133.3|  798|Caenorhabditis elegans Hypothetical
           protein F37E3.1 protein.
          Length = 798

 Score = 29.1 bits (62), Expect = 1.8
 Identities = 15/38 (39%), Positives = 25/38 (65%), Gaps = 2/38 (5%)
 Frame = +3

Query: 222 RIFILLSLVYLVNAKKYNF--DNLENSISEHDEVNSKK 329
           R+ +  +LV L+N+K +NF  D +E  ISE  ++ SK+
Sbjct: 82  RVTVYTTLVGLLNSKNFNFGGDVVEKLISEQQDLLSKQ 119


>Z83219-8|CAD57688.1|  455|Caenorhabditis elegans Hypothetical
           protein C31C9.1b protein.
          Length = 455

 Score = 27.1 bits (57), Expect = 7.4
 Identities = 15/49 (30%), Positives = 30/49 (61%), Gaps = 1/49 (2%)
 Frame = +3

Query: 216 IMRIFILLSLVYLV-NAKKYNFDNLENSISEHDEVNSKKFNPDWKDLDT 359
           + R+F+L+ +V  V +++  +F    N + E +E   K+F+  W+DL+T
Sbjct: 8   LQRLFVLILVVASVLSSEDRDFRIRTNRVWE-EEAPEKQFSGRWQDLET 55


>Z83219-7|CAB05698.2|  473|Caenorhabditis elegans Hypothetical
           protein C31C9.1a protein.
          Length = 473

 Score = 27.1 bits (57), Expect = 7.4
 Identities = 15/49 (30%), Positives = 30/49 (61%), Gaps = 1/49 (2%)
 Frame = +3

Query: 216 IMRIFILLSLVYLV-NAKKYNFDNLENSISEHDEVNSKKFNPDWKDLDT 359
           + R+F+L+ +V  V +++  +F    N + E +E   K+F+  W+DL+T
Sbjct: 8   LQRLFVLILVVASVLSSEDRDFRIRTNRVWE-EEAPEKQFSGRWQDLET 55


>Z80217-11|CAD57698.1|  455|Caenorhabditis elegans Hypothetical
           protein C31C9.1b protein.
          Length = 455

 Score = 27.1 bits (57), Expect = 7.4
 Identities = 15/49 (30%), Positives = 30/49 (61%), Gaps = 1/49 (2%)
 Frame = +3

Query: 216 IMRIFILLSLVYLV-NAKKYNFDNLENSISEHDEVNSKKFNPDWKDLDT 359
           + R+F+L+ +V  V +++  +F    N + E +E   K+F+  W+DL+T
Sbjct: 8   LQRLFVLILVVASVLSSEDRDFRIRTNRVWE-EEAPEKQFSGRWQDLET 55


>Z80217-10|CAB02296.2|  473|Caenorhabditis elegans Hypothetical
           protein C31C9.1a protein.
          Length = 473

 Score = 27.1 bits (57), Expect = 7.4
 Identities = 15/49 (30%), Positives = 30/49 (61%), Gaps = 1/49 (2%)
 Frame = +3

Query: 216 IMRIFILLSLVYLV-NAKKYNFDNLENSISEHDEVNSKKFNPDWKDLDT 359
           + R+F+L+ +V  V +++  +F    N + E +E   K+F+  W+DL+T
Sbjct: 8   LQRLFVLILVVASVLSSEDRDFRIRTNRVWE-EEAPEKQFSGRWQDLET 55


>U70848-1|AAB09107.2|  434|Caenorhabditis elegans Hypothetical
           protein C43G2.1 protein.
          Length = 434

 Score = 26.6 bits (56), Expect = 9.8
 Identities = 18/56 (32%), Positives = 25/56 (44%)
 Frame = +3

Query: 300 SEHDEVNSKKFNPDWKDLDTRKLPEWYDRAKIGIFLHWGVYSVPSYGSEWFWSNWN 467
           SE   + +K +   WK L    LPEW    +     H     +PS+ SE F S W+
Sbjct: 144 SEQTGIVTKTYEARWKVLKYEHLPEWLQDNE--FLRHGHRPPLPSF-SECFKSIWS 196


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,859,240
Number of Sequences: 27780
Number of extensions: 216621
Number of successful extensions: 683
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 656
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 683
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 924715866
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)