Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_J06
         (492 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY569697-1|AAS86650.1|  413|Apis mellifera complementary sex det...    22   3.1  
DQ325083-1|ABD14097.1|  189|Apis mellifera complementary sex det...    22   4.1  
DQ244074-1|ABB36784.1|  517|Apis mellifera cytochrome P450 monoo...    21   5.4  
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              21   7.1  

>AY569697-1|AAS86650.1|  413|Apis mellifera complementary sex
           determiner protein.
          Length = 413

 Score = 22.2 bits (45), Expect = 3.1
 Identities = 6/22 (27%), Positives = 16/22 (72%)
 Frame = -2

Query: 233 YEYSHDSMVTKCVFNNYVLHIK 168
           Y+Y++++   K  + NY+++I+
Sbjct: 329 YKYNYNNYNKKLYYKNYIINIE 350


>DQ325083-1|ABD14097.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 21.8 bits (44), Expect = 4.1
 Identities = 6/23 (26%), Positives = 16/23 (69%)
 Frame = -2

Query: 236 QYEYSHDSMVTKCVFNNYVLHIK 168
           +Y Y++++   K  + NY+++I+
Sbjct: 103 KYNYNNNNYNKKLYYKNYIINIE 125



 Score = 20.6 bits (41), Expect = 9.4
 Identities = 6/18 (33%), Positives = 11/18 (61%)
 Frame = -3

Query: 136 HFLWNFKNLITINKNNHN 83
           ++ +N+ N    N NN+N
Sbjct: 95  NYKYNYNNKYNYNNNNYN 112


>DQ244074-1|ABB36784.1|  517|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 517

 Score = 21.4 bits (43), Expect = 5.4
 Identities = 6/15 (40%), Positives = 11/15 (73%)
 Frame = +3

Query: 414 GVYSVPSYGSEWFWS 458
           G +S+P +G+ W +S
Sbjct: 55  GPFSLPIFGTRWIFS 69


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 21.0 bits (42), Expect = 7.1
 Identities = 6/29 (20%), Positives = 18/29 (62%)
 Frame = -1

Query: 489 MCTSENHRSNYSKTILTHNWERNTHPSVK 403
           + + +NH   Y  +I+  +++RN + +++
Sbjct: 226 LMSQDNHSKEYLVSIMFSHYDRNNNGNLE 254


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 139,199
Number of Sequences: 438
Number of extensions: 3100
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 13544190
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)