Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_J06
         (492 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g25470.2 68418.m03029 expressed protein                             30   0.74 
At5g25470.1 68418.m03028 expressed protein                             30   0.74 
At5g28730.1 68418.m03529 hypothetical protein                          29   2.2  
At5g15540.1 68418.m01819 expressed protein low similarity to DNA...    28   3.0  
At5g17980.1 68418.m02109 C2 domain-containing protein contains I...    28   3.9  
At1g61550.1 68414.m06934 S-locus protein kinase, putative simila...    27   5.2  
At1g24320.1 68414.m03068 alpha-glucosidase, putative similar to ...    27   6.9  

>At5g25470.2 68418.m03029 expressed protein
          Length = 280

 Score = 30.3 bits (65), Expect = 0.74
 Identities = 16/57 (28%), Positives = 28/57 (49%)
 Frame = +3

Query: 279 DNLENSISEHDEVNSKKFNPDWKDLDTRKLPEWYDRAKIGIFLHWGVYSVPSYGSEW 449
           D ++ ++S+     S     +WK    R  PE + ++  G F H  V+SV  +G+ W
Sbjct: 8   DKIQGNVSKPCFWKSLSPGQNWKSKSMRSFPEEFVKSTPGAFEHRVVFSV-RWGNSW 63


>At5g25470.1 68418.m03028 expressed protein
          Length = 280

 Score = 30.3 bits (65), Expect = 0.74
 Identities = 16/57 (28%), Positives = 28/57 (49%)
 Frame = +3

Query: 279 DNLENSISEHDEVNSKKFNPDWKDLDTRKLPEWYDRAKIGIFLHWGVYSVPSYGSEW 449
           D ++ ++S+     S     +WK    R  PE + ++  G F H  V+SV  +G+ W
Sbjct: 8   DKIQGNVSKPCFWKSLSPGQNWKSKSMRSFPEEFVKSTPGAFEHRVVFSV-RWGNSW 63


>At5g28730.1 68418.m03529 hypothetical protein
          Length = 296

 Score = 28.7 bits (61), Expect = 2.2
 Identities = 24/77 (31%), Positives = 40/77 (51%), Gaps = 5/77 (6%)
 Frame = +3

Query: 228 FILLSLVYLVNAKKYNFDNL--ENSI--SEHDEVNSKKFNPDWKDLDTRKLPEWYDR-AK 392
           F+ ++L    N K Y+FDN+  EN++  + HD  + +  N D  +++     E Y R  +
Sbjct: 219 FLTVNLFETHNIKDYDFDNVDSENNVVQAPHDATDEQD-NNDGIEIEESSEAEMYMRIVR 277

Query: 393 IGIFLHWGVYSVPSYGS 443
             I  H  ++SV  YGS
Sbjct: 278 DQIAEH--IWSVKGYGS 292


>At5g15540.1 68418.m01819 expressed protein low similarity to DNA
            repair and meiosis protein Rad9 [Coprinus cinereus]
            GI:1353390, SP|Q09725 Sister chromatid cohesion protein
            mis4 {Schizosaccharomyces pombe}
          Length = 1755

 Score = 28.3 bits (60), Expect = 3.0
 Identities = 22/71 (30%), Positives = 36/71 (50%), Gaps = 4/71 (5%)
 Frame = -3

Query: 478  REPPFQLLQNH--SDP*LGTEYTPQ-CKNIPILALSYHSGNFRVSKSF-QSGLNFLEFTS 311
            RE   +L+  H  S P +G +Y  +  + I    +S      ++ +    S  NF EFTS
Sbjct: 832  REAALELVGRHIASHPDVGIKYFEKVAERIKDTGVSVRKRAIKIIRDMCTSNPNFSEFTS 891

Query: 310  SCSDIEFSRLS 278
            +C++I  SR+S
Sbjct: 892  ACAEI-LSRIS 901


>At5g17980.1 68418.m02109 C2 domain-containing protein contains
           INTERPRO:IPR000008 C2 domain
          Length = 1049

 Score = 27.9 bits (59), Expect = 3.9
 Identities = 13/36 (36%), Positives = 18/36 (50%)
 Frame = +3

Query: 321 SKKFNPDWKDLDTRKLPEWYDRAKIGIFLHWGVYSV 428
           S   +P W +  T K+ +      IG+F  WGVY V
Sbjct: 677 SDSLDPKWNEQYTWKVYDPCTVLTIGVFDSWGVYEV 712


>At1g61550.1 68414.m06934 S-locus protein kinase, putative similar
           to receptor protein kinase [Ipomoea trifida]
           gi|836954|gb|AAC23542; contains S-locus glycoprotein
           family domain, Pfam:PF00954
          Length = 802

 Score = 27.5 bits (58), Expect = 5.2
 Identities = 9/21 (42%), Positives = 12/21 (57%)
 Frame = +3

Query: 426 VPSYGSEWFWSNWNGGSLKYT 488
           VP +  EW   NW GG ++ T
Sbjct: 304 VPQFSEEWKRGNWTGGCVRRT 324


>At1g24320.1 68414.m03068 alpha-glucosidase, putative similar to
           alpha-glucosidase I from GI:16506680 [Arabidopsis
           thaliana]
          Length = 789

 Score = 27.1 bits (57), Expect = 6.9
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = +1

Query: 304 NMMR*TLKNLIRTGKIWTHENYRNGTTE 387
           N++R  ++N  +TG IW H +   GT E
Sbjct: 739 NLIRNVVRNYDQTGIIWEHYDQTKGTGE 766


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,973,108
Number of Sequences: 28952
Number of extensions: 191644
Number of successful extensions: 470
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 461
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 469
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 858708096
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)