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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_J05
         (386 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|ch...    64   7e-12
SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha 2|Schizosacchar...    64   7e-12
SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces...    42   3e-05
SPAC17A5.12 |ucp7||UBA/TPR/DNAJ domain protein Ucp7|Schizosaccha...    28   0.44 
SPAC23E2.01 |fep1|gaf2|iron-sensing transcription factor Fep1|Sc...    27   1.4  
SPAC6F12.05c |tnr3||thiamine diphosphokinase Tnr3 |Schizosacchar...    25   3.1  
SPAC12B10.09 |||S-adenosylmethionine transporter |Schizosaccharo...    25   3.1  
SPAC27D7.13c |ssm4|SPAC637.01c|p150-Glued|Schizosaccharomyces po...    25   5.5  
SPBC649.05 |cut12|stf1|spindle pole body protein Cut12 |Schizosa...    24   7.2  
SPBC3B8.06 |||conserved fungal protein|Schizosaccharomyces pombe...    24   9.6  
SPBC26H8.10 |dis3|rrp44|3'-5' exoribonuclease subunit Dis3 |Schi...    24   9.6  
SPCC962.02c |bir1|cut17, pbh1, SPCP31B10.10c|survivin homolog|Sc...    24   9.6  

>SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 455

 Score = 64.1 bits (149), Expect = 7e-12
 Identities = 27/28 (96%), Positives = 28/28 (100%)
 Frame = +1

Query: 10  DLMYAKRAFVHWYVGEGMEEGEFSEARE 93
           DLMY+KRAFVHWYVGEGMEEGEFSEARE
Sbjct: 400 DLMYSKRAFVHWYVGEGMEEGEFSEARE 427


>SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha
           2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 449

 Score = 64.1 bits (149), Expect = 7e-12
 Identities = 27/28 (96%), Positives = 28/28 (100%)
 Frame = +1

Query: 10  DLMYAKRAFVHWYVGEGMEEGEFSEARE 93
           DLMY+KRAFVHWYVGEGMEEGEFSEARE
Sbjct: 396 DLMYSKRAFVHWYVGEGMEEGEFSEARE 423


>SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 448

 Score = 42.3 bits (95), Expect = 3e-05
 Identities = 15/24 (62%), Positives = 21/24 (87%)
 Frame = +1

Query: 16  MYAKRAFVHWYVGEGMEEGEFSEA 87
           M+ ++AF+HWY GEGM+E EF+EA
Sbjct: 388 MFRRKAFLHWYTGEGMDEMEFTEA 411


>SPAC17A5.12 |ucp7||UBA/TPR/DNAJ domain protein
           Ucp7|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 697

 Score = 28.3 bits (60), Expect = 0.44
 Identities = 18/63 (28%), Positives = 32/63 (50%), Gaps = 2/63 (3%)
 Frame = -1

Query: 194 NIFIGLVLFGSLT-LSLGGVHADFFVVTSRERPSHSRASENSPSSIPSPTYQCTKA-RLA 21
           NI+  L+  G ++ L + G H     ++S    SHS+ +   P S P+ T    K+ RL 
Sbjct: 521 NIWKDLIADGQISKLYIDGKHRCEAAISSHSSESHSKRTTQQPKSTPNHTNIKVKSERLQ 580

Query: 20  YIK 12
           +++
Sbjct: 581 HVR 583


>SPAC23E2.01 |fep1|gaf2|iron-sensing transcription factor
           Fep1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 564

 Score = 26.6 bits (56), Expect = 1.4
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = -1

Query: 116 TSRERPSHSRASENSPSSIPSPTY 45
           TSR R SH++  ++SP   PS T+
Sbjct: 148 TSRRRSSHNQHEDSSPPHEPSVTF 171


>SPAC6F12.05c |tnr3||thiamine diphosphokinase Tnr3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 569

 Score = 25.4 bits (53), Expect = 3.1
 Identities = 14/46 (30%), Positives = 20/46 (43%)
 Frame = -1

Query: 182 GLVLFGSLTLSLGGVHADFFVVTSRERPSHSRASENSPSSIPSPTY 45
           G  LFG L+    GVH   ++  ++E P        SP+    P Y
Sbjct: 126 GFWLFGFLST---GVHCTMYIPATKEHPLRIWVPRRSPTKQTWPNY 168


>SPAC12B10.09 |||S-adenosylmethionine transporter
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 345

 Score = 25.4 bits (53), Expect = 3.1
 Identities = 10/31 (32%), Positives = 20/31 (64%)
 Frame = -3

Query: 93  LTSFGELTLLHTLTDVPVHEGALSVHQVLVP 1
           +TS   L+ + T+  +  HEG L++++ +VP
Sbjct: 287 MTSQQRLSYVFTIKSIVAHEGFLALYKGIVP 317


>SPAC27D7.13c |ssm4|SPAC637.01c|p150-Glued|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 670

 Score = 24.6 bits (51), Expect = 5.5
 Identities = 11/24 (45%), Positives = 15/24 (62%), Gaps = 1/24 (4%)
 Frame = -1

Query: 95  HSRASENSPSSIPSP-TYQCTKAR 27
           HS    N+ +SIPSP T+ C + R
Sbjct: 599 HSLRDSNTENSIPSPLTFACKEIR 622


>SPBC649.05 |cut12|stf1|spindle pole body protein Cut12
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 548

 Score = 24.2 bits (50), Expect = 7.2
 Identities = 15/54 (27%), Positives = 20/54 (37%)
 Frame = +1

Query: 46  YVGEGMEEGEFSEARE*LGRSREVTTKKSAWTPPRERVREPKSTKPMNMFEGGS 207
           Y G+      FS+ RE         T K    P +  VREP+   P      G+
Sbjct: 321 YKGKEFVGNRFSQMRELYTAKPSPITTKVVSRPSQSDVREPQEQVPSKNLHRGA 374


>SPBC3B8.06 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 511

 Score = 23.8 bits (49), Expect = 9.6
 Identities = 8/17 (47%), Positives = 11/17 (64%)
 Frame = +1

Query: 4   HEDLMYAKRAFVHWYVG 54
           H DL +A  AF+ W+ G
Sbjct: 325 HHDLQHASLAFMLWWAG 341


>SPBC26H8.10 |dis3|rrp44|3'-5' exoribonuclease subunit Dis3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 970

 Score = 23.8 bits (49), Expect = 9.6
 Identities = 10/28 (35%), Positives = 15/28 (53%)
 Frame = +1

Query: 1   RHEDLMYAKRAFVHWYVGEGMEEGEFSE 84
           RH     A RA + +YVG+ ++ G   E
Sbjct: 852 RHRMAQMAGRASIEYYVGQALKGGVAEE 879


>SPCC962.02c |bir1|cut17, pbh1, SPCP31B10.10c|survivin
           homolog|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 997

 Score = 23.8 bits (49), Expect = 9.6
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = +1

Query: 103 RSREVTTKKSAWTPPRERVREPKSTKP 183
           R+ +  TK    T PR + + PK +KP
Sbjct: 274 RAPQSPTKPVLLTAPRRKNKSPKKSKP 300


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,208,191
Number of Sequences: 5004
Number of extensions: 18030
Number of successful extensions: 78
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 75
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 78
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 128344734
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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