Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0001_J05
(386 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|ch... 64 7e-12
SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha 2|Schizosacchar... 64 7e-12
SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces... 42 3e-05
SPAC17A5.12 |ucp7||UBA/TPR/DNAJ domain protein Ucp7|Schizosaccha... 28 0.44
SPAC23E2.01 |fep1|gaf2|iron-sensing transcription factor Fep1|Sc... 27 1.4
SPAC6F12.05c |tnr3||thiamine diphosphokinase Tnr3 |Schizosacchar... 25 3.1
SPAC12B10.09 |||S-adenosylmethionine transporter |Schizosaccharo... 25 3.1
SPAC27D7.13c |ssm4|SPAC637.01c|p150-Glued|Schizosaccharomyces po... 25 5.5
SPBC649.05 |cut12|stf1|spindle pole body protein Cut12 |Schizosa... 24 7.2
SPBC3B8.06 |||conserved fungal protein|Schizosaccharomyces pombe... 24 9.6
SPBC26H8.10 |dis3|rrp44|3'-5' exoribonuclease subunit Dis3 |Schi... 24 9.6
SPCC962.02c |bir1|cut17, pbh1, SPCP31B10.10c|survivin homolog|Sc... 24 9.6
>SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 455
Score = 64.1 bits (149), Expect = 7e-12
Identities = 27/28 (96%), Positives = 28/28 (100%)
Frame = +1
Query: 10 DLMYAKRAFVHWYVGEGMEEGEFSEARE 93
DLMY+KRAFVHWYVGEGMEEGEFSEARE
Sbjct: 400 DLMYSKRAFVHWYVGEGMEEGEFSEARE 427
>SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha
2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 449
Score = 64.1 bits (149), Expect = 7e-12
Identities = 27/28 (96%), Positives = 28/28 (100%)
Frame = +1
Query: 10 DLMYAKRAFVHWYVGEGMEEGEFSEARE 93
DLMY+KRAFVHWYVGEGMEEGEFSEARE
Sbjct: 396 DLMYSKRAFVHWYVGEGMEEGEFSEARE 423
>SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 448
Score = 42.3 bits (95), Expect = 3e-05
Identities = 15/24 (62%), Positives = 21/24 (87%)
Frame = +1
Query: 16 MYAKRAFVHWYVGEGMEEGEFSEA 87
M+ ++AF+HWY GEGM+E EF+EA
Sbjct: 388 MFRRKAFLHWYTGEGMDEMEFTEA 411
>SPAC17A5.12 |ucp7||UBA/TPR/DNAJ domain protein
Ucp7|Schizosaccharomyces pombe|chr 1|||Manual
Length = 697
Score = 28.3 bits (60), Expect = 0.44
Identities = 18/63 (28%), Positives = 32/63 (50%), Gaps = 2/63 (3%)
Frame = -1
Query: 194 NIFIGLVLFGSLT-LSLGGVHADFFVVTSRERPSHSRASENSPSSIPSPTYQCTKA-RLA 21
NI+ L+ G ++ L + G H ++S SHS+ + P S P+ T K+ RL
Sbjct: 521 NIWKDLIADGQISKLYIDGKHRCEAAISSHSSESHSKRTTQQPKSTPNHTNIKVKSERLQ 580
Query: 20 YIK 12
+++
Sbjct: 581 HVR 583
>SPAC23E2.01 |fep1|gaf2|iron-sensing transcription factor
Fep1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 564
Score = 26.6 bits (56), Expect = 1.4
Identities = 11/24 (45%), Positives = 16/24 (66%)
Frame = -1
Query: 116 TSRERPSHSRASENSPSSIPSPTY 45
TSR R SH++ ++SP PS T+
Sbjct: 148 TSRRRSSHNQHEDSSPPHEPSVTF 171
>SPAC6F12.05c |tnr3||thiamine diphosphokinase Tnr3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 569
Score = 25.4 bits (53), Expect = 3.1
Identities = 14/46 (30%), Positives = 20/46 (43%)
Frame = -1
Query: 182 GLVLFGSLTLSLGGVHADFFVVTSRERPSHSRASENSPSSIPSPTY 45
G LFG L+ GVH ++ ++E P SP+ P Y
Sbjct: 126 GFWLFGFLST---GVHCTMYIPATKEHPLRIWVPRRSPTKQTWPNY 168
>SPAC12B10.09 |||S-adenosylmethionine transporter
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 345
Score = 25.4 bits (53), Expect = 3.1
Identities = 10/31 (32%), Positives = 20/31 (64%)
Frame = -3
Query: 93 LTSFGELTLLHTLTDVPVHEGALSVHQVLVP 1
+TS L+ + T+ + HEG L++++ +VP
Sbjct: 287 MTSQQRLSYVFTIKSIVAHEGFLALYKGIVP 317
>SPAC27D7.13c |ssm4|SPAC637.01c|p150-Glued|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 670
Score = 24.6 bits (51), Expect = 5.5
Identities = 11/24 (45%), Positives = 15/24 (62%), Gaps = 1/24 (4%)
Frame = -1
Query: 95 HSRASENSPSSIPSP-TYQCTKAR 27
HS N+ +SIPSP T+ C + R
Sbjct: 599 HSLRDSNTENSIPSPLTFACKEIR 622
>SPBC649.05 |cut12|stf1|spindle pole body protein Cut12
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 548
Score = 24.2 bits (50), Expect = 7.2
Identities = 15/54 (27%), Positives = 20/54 (37%)
Frame = +1
Query: 46 YVGEGMEEGEFSEARE*LGRSREVTTKKSAWTPPRERVREPKSTKPMNMFEGGS 207
Y G+ FS+ RE T K P + VREP+ P G+
Sbjct: 321 YKGKEFVGNRFSQMRELYTAKPSPITTKVVSRPSQSDVREPQEQVPSKNLHRGA 374
>SPBC3B8.06 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 511
Score = 23.8 bits (49), Expect = 9.6
Identities = 8/17 (47%), Positives = 11/17 (64%)
Frame = +1
Query: 4 HEDLMYAKRAFVHWYVG 54
H DL +A AF+ W+ G
Sbjct: 325 HHDLQHASLAFMLWWAG 341
>SPBC26H8.10 |dis3|rrp44|3'-5' exoribonuclease subunit Dis3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 970
Score = 23.8 bits (49), Expect = 9.6
Identities = 10/28 (35%), Positives = 15/28 (53%)
Frame = +1
Query: 1 RHEDLMYAKRAFVHWYVGEGMEEGEFSE 84
RH A RA + +YVG+ ++ G E
Sbjct: 852 RHRMAQMAGRASIEYYVGQALKGGVAEE 879
>SPCC962.02c |bir1|cut17, pbh1, SPCP31B10.10c|survivin
homolog|Schizosaccharomyces pombe|chr 3|||Manual
Length = 997
Score = 23.8 bits (49), Expect = 9.6
Identities = 10/27 (37%), Positives = 15/27 (55%)
Frame = +1
Query: 103 RSREVTTKKSAWTPPRERVREPKSTKP 183
R+ + TK T PR + + PK +KP
Sbjct: 274 RAPQSPTKPVLLTAPRRKNKSPKKSKP 300
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,208,191
Number of Sequences: 5004
Number of extensions: 18030
Number of successful extensions: 78
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 75
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 78
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 128344734
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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