Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0001_J05
(386 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_51150| Best HMM Match : Tubulin_C (HMM E-Value=0) 65 2e-11
SB_48961| Best HMM Match : Tubulin (HMM E-Value=0) 65 2e-11
SB_47795| Best HMM Match : Tubulin_C (HMM E-Value=0.24) 65 2e-11
SB_42897| Best HMM Match : No HMM Matches (HMM E-Value=.) 65 2e-11
SB_37573| Best HMM Match : No HMM Matches (HMM E-Value=.) 65 2e-11
SB_22193| Best HMM Match : No HMM Matches (HMM E-Value=.) 65 2e-11
SB_22192| Best HMM Match : No HMM Matches (HMM E-Value=.) 65 2e-11
SB_22191| Best HMM Match : No HMM Matches (HMM E-Value=.) 65 2e-11
SB_22190| Best HMM Match : No HMM Matches (HMM E-Value=.) 65 2e-11
SB_19437| Best HMM Match : Tubulin (HMM E-Value=0) 65 2e-11
SB_2674| Best HMM Match : Tubulin (HMM E-Value=0) 65 2e-11
SB_51156| Best HMM Match : Tubulin_C (HMM E-Value=0) 65 2e-11
SB_23895| Best HMM Match : Tubulin_C (HMM E-Value=0) 65 2e-11
SB_5512| Best HMM Match : Tubulin (HMM E-Value=0) 65 2e-11
SB_2003| Best HMM Match : Tubulin (HMM E-Value=0) 65 2e-11
SB_57880| Best HMM Match : No HMM Matches (HMM E-Value=.) 60 6e-10
SB_47198| Best HMM Match : Tubulin (HMM E-Value=0) 42 1e-04
SB_44780| Best HMM Match : 7tm_1 (HMM E-Value=1.2e-34) 42 1e-04
SB_39308| Best HMM Match : Tubulin (HMM E-Value=0) 42 1e-04
SB_17879| Best HMM Match : Tubulin (HMM E-Value=0) 42 1e-04
SB_17651| Best HMM Match : Tubulin_C (HMM E-Value=4.7e-28) 42 1e-04
SB_17880| Best HMM Match : Tubulin_C (HMM E-Value=0) 41 4e-04
SB_25311| Best HMM Match : Tubulin (HMM E-Value=0) 36 0.009
SB_56951| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 3.1
SB_4344| Best HMM Match : zf-C2H2 (HMM E-Value=0) 27 4.0
SB_53570| Best HMM Match : Y_phosphatase (HMM E-Value=0) 27 4.0
SB_44822| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.1
SB_33019| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.1
SB_19987| Best HMM Match : MFMR (HMM E-Value=1.4) 27 7.1
SB_1527| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 9.3
>SB_51150| Best HMM Match : Tubulin_C (HMM E-Value=0)
Length = 232
Score = 65.3 bits (152), Expect = 2e-11
Identities = 28/28 (100%), Positives = 28/28 (100%)
Frame = +1
Query: 10 DLMYAKRAFVHWYVGEGMEEGEFSEARE 93
DLMYAKRAFVHWYVGEGMEEGEFSEARE
Sbjct: 194 DLMYAKRAFVHWYVGEGMEEGEFSEARE 221
>SB_48961| Best HMM Match : Tubulin (HMM E-Value=0)
Length = 536
Score = 65.3 bits (152), Expect = 2e-11
Identities = 28/28 (100%), Positives = 28/28 (100%)
Frame = +1
Query: 10 DLMYAKRAFVHWYVGEGMEEGEFSEARE 93
DLMYAKRAFVHWYVGEGMEEGEFSEARE
Sbjct: 380 DLMYAKRAFVHWYVGEGMEEGEFSEARE 407
>SB_47795| Best HMM Match : Tubulin_C (HMM E-Value=0.24)
Length = 149
Score = 65.3 bits (152), Expect = 2e-11
Identities = 28/28 (100%), Positives = 28/28 (100%)
Frame = +1
Query: 10 DLMYAKRAFVHWYVGEGMEEGEFSEARE 93
DLMYAKRAFVHWYVGEGMEEGEFSEARE
Sbjct: 94 DLMYAKRAFVHWYVGEGMEEGEFSEARE 121
>SB_42897| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 602
Score = 65.3 bits (152), Expect = 2e-11
Identities = 28/28 (100%), Positives = 28/28 (100%)
Frame = +1
Query: 10 DLMYAKRAFVHWYVGEGMEEGEFSEARE 93
DLMYAKRAFVHWYVGEGMEEGEFSEARE
Sbjct: 548 DLMYAKRAFVHWYVGEGMEEGEFSEARE 575
>SB_37573| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 389
Score = 65.3 bits (152), Expect = 2e-11
Identities = 28/28 (100%), Positives = 28/28 (100%)
Frame = +1
Query: 10 DLMYAKRAFVHWYVGEGMEEGEFSEARE 93
DLMYAKRAFVHWYVGEGMEEGEFSEARE
Sbjct: 333 DLMYAKRAFVHWYVGEGMEEGEFSEARE 360
>SB_22193| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1231
Score = 65.3 bits (152), Expect = 2e-11
Identities = 28/28 (100%), Positives = 28/28 (100%)
Frame = +1
Query: 10 DLMYAKRAFVHWYVGEGMEEGEFSEARE 93
DLMYAKRAFVHWYVGEGMEEGEFSEARE
Sbjct: 767 DLMYAKRAFVHWYVGEGMEEGEFSEARE 794
Score = 65.3 bits (152), Expect = 2e-11
Identities = 28/28 (100%), Positives = 28/28 (100%)
Frame = +1
Query: 10 DLMYAKRAFVHWYVGEGMEEGEFSEARE 93
DLMYAKRAFVHWYVGEGMEEGEFSEARE
Sbjct: 1176 DLMYAKRAFVHWYVGEGMEEGEFSEARE 1203
>SB_22192| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 452
Score = 65.3 bits (152), Expect = 2e-11
Identities = 28/28 (100%), Positives = 28/28 (100%)
Frame = +1
Query: 10 DLMYAKRAFVHWYVGEGMEEGEFSEARE 93
DLMYAKRAFVHWYVGEGMEEGEFSEARE
Sbjct: 396 DLMYAKRAFVHWYVGEGMEEGEFSEARE 423
>SB_22191| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 865
Score = 65.3 bits (152), Expect = 2e-11
Identities = 28/28 (100%), Positives = 28/28 (100%)
Frame = +1
Query: 10 DLMYAKRAFVHWYVGEGMEEGEFSEARE 93
DLMYAKRAFVHWYVGEGMEEGEFSEARE
Sbjct: 381 DLMYAKRAFVHWYVGEGMEEGEFSEARE 408
Score = 65.3 bits (152), Expect = 2e-11
Identities = 28/28 (100%), Positives = 28/28 (100%)
Frame = +1
Query: 10 DLMYAKRAFVHWYVGEGMEEGEFSEARE 93
DLMYAKRAFVHWYVGEGMEEGEFSEARE
Sbjct: 812 DLMYAKRAFVHWYVGEGMEEGEFSEARE 839
>SB_22190| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 417
Score = 65.3 bits (152), Expect = 2e-11
Identities = 28/28 (100%), Positives = 28/28 (100%)
Frame = +1
Query: 10 DLMYAKRAFVHWYVGEGMEEGEFSEARE 93
DLMYAKRAFVHWYVGEGMEEGEFSEARE
Sbjct: 361 DLMYAKRAFVHWYVGEGMEEGEFSEARE 388
>SB_19437| Best HMM Match : Tubulin (HMM E-Value=0)
Length = 885
Score = 65.3 bits (152), Expect = 2e-11
Identities = 28/28 (100%), Positives = 28/28 (100%)
Frame = +1
Query: 10 DLMYAKRAFVHWYVGEGMEEGEFSEARE 93
DLMYAKRAFVHWYVGEGMEEGEFSEARE
Sbjct: 396 DLMYAKRAFVHWYVGEGMEEGEFSEARE 423
Score = 65.3 bits (152), Expect = 2e-11
Identities = 28/28 (100%), Positives = 28/28 (100%)
Frame = +1
Query: 10 DLMYAKRAFVHWYVGEGMEEGEFSEARE 93
DLMYAKRAFVHWYVGEGMEEGEFSEARE
Sbjct: 829 DLMYAKRAFVHWYVGEGMEEGEFSEARE 856
>SB_2674| Best HMM Match : Tubulin (HMM E-Value=0)
Length = 1036
Score = 65.3 bits (152), Expect = 2e-11
Identities = 28/28 (100%), Positives = 28/28 (100%)
Frame = +1
Query: 10 DLMYAKRAFVHWYVGEGMEEGEFSEARE 93
DLMYAKRAFVHWYVGEGMEEGEFSEARE
Sbjct: 981 DLMYAKRAFVHWYVGEGMEEGEFSEARE 1008
>SB_51156| Best HMM Match : Tubulin_C (HMM E-Value=0)
Length = 377
Score = 65.3 bits (152), Expect = 2e-11
Identities = 28/28 (100%), Positives = 28/28 (100%)
Frame = +1
Query: 10 DLMYAKRAFVHWYVGEGMEEGEFSEARE 93
DLMYAKRAFVHWYVGEGMEEGEFSEARE
Sbjct: 321 DLMYAKRAFVHWYVGEGMEEGEFSEARE 348
>SB_23895| Best HMM Match : Tubulin_C (HMM E-Value=0)
Length = 250
Score = 65.3 bits (152), Expect = 2e-11
Identities = 28/28 (100%), Positives = 28/28 (100%)
Frame = +1
Query: 10 DLMYAKRAFVHWYVGEGMEEGEFSEARE 93
DLMYAKRAFVHWYVGEGMEEGEFSEARE
Sbjct: 194 DLMYAKRAFVHWYVGEGMEEGEFSEARE 221
>SB_5512| Best HMM Match : Tubulin (HMM E-Value=0)
Length = 365
Score = 65.3 bits (152), Expect = 2e-11
Identities = 28/28 (100%), Positives = 28/28 (100%)
Frame = +1
Query: 10 DLMYAKRAFVHWYVGEGMEEGEFSEARE 93
DLMYAKRAFVHWYVGEGMEEGEFSEARE
Sbjct: 309 DLMYAKRAFVHWYVGEGMEEGEFSEARE 336
>SB_2003| Best HMM Match : Tubulin (HMM E-Value=0)
Length = 451
Score = 65.3 bits (152), Expect = 2e-11
Identities = 28/28 (100%), Positives = 28/28 (100%)
Frame = +1
Query: 10 DLMYAKRAFVHWYVGEGMEEGEFSEARE 93
DLMYAKRAFVHWYVGEGMEEGEFSEARE
Sbjct: 396 DLMYAKRAFVHWYVGEGMEEGEFSEARE 423
>SB_57880| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 65
Score = 60.1 bits (139), Expect = 6e-10
Identities = 27/31 (87%), Positives = 27/31 (87%)
Frame = +1
Query: 1 RHEDLMYAKRAFVHWYVGEGMEEGEFSEARE 93
R D YAKRAFVHWYVGEGMEEGEFSEARE
Sbjct: 7 RFYDHDYAKRAFVHWYVGEGMEEGEFSEARE 37
>SB_47198| Best HMM Match : Tubulin (HMM E-Value=0)
Length = 446
Score = 42.3 bits (95), Expect = 1e-04
Identities = 15/24 (62%), Positives = 21/24 (87%)
Frame = +1
Query: 16 MYAKRAFVHWYVGEGMEEGEFSEA 87
M+ ++AF+HWY GEGM+E EF+EA
Sbjct: 388 MFRRKAFLHWYTGEGMDEMEFTEA 411
>SB_44780| Best HMM Match : 7tm_1 (HMM E-Value=1.2e-34)
Length = 747
Score = 42.3 bits (95), Expect = 1e-04
Identities = 15/24 (62%), Positives = 21/24 (87%)
Frame = +1
Query: 16 MYAKRAFVHWYVGEGMEEGEFSEA 87
M+ ++AF+HWY GEGM+E EF+EA
Sbjct: 153 MFRRKAFLHWYTGEGMDEMEFTEA 176
>SB_39308| Best HMM Match : Tubulin (HMM E-Value=0)
Length = 391
Score = 42.3 bits (95), Expect = 1e-04
Identities = 15/24 (62%), Positives = 21/24 (87%)
Frame = +1
Query: 16 MYAKRAFVHWYVGEGMEEGEFSEA 87
M+ ++AF+HWY GEGM+E EF+EA
Sbjct: 333 MFRRKAFLHWYTGEGMDEMEFTEA 356
>SB_17879| Best HMM Match : Tubulin (HMM E-Value=0)
Length = 446
Score = 42.3 bits (95), Expect = 1e-04
Identities = 15/24 (62%), Positives = 21/24 (87%)
Frame = +1
Query: 16 MYAKRAFVHWYVGEGMEEGEFSEA 87
M+ ++AF+HWY GEGM+E EF+EA
Sbjct: 388 MFRRKAFLHWYTGEGMDEMEFTEA 411
>SB_17651| Best HMM Match : Tubulin_C (HMM E-Value=4.7e-28)
Length = 271
Score = 42.3 bits (95), Expect = 1e-04
Identities = 15/24 (62%), Positives = 21/24 (87%)
Frame = +1
Query: 16 MYAKRAFVHWYVGEGMEEGEFSEA 87
M+ ++AF+HWY GEGM+E EF+EA
Sbjct: 215 MFRRKAFLHWYTGEGMDEMEFTEA 238
>SB_17880| Best HMM Match : Tubulin_C (HMM E-Value=0)
Length = 375
Score = 40.7 bits (91), Expect = 4e-04
Identities = 15/28 (53%), Positives = 20/28 (71%)
Frame = +1
Query: 4 HEDLMYAKRAFVHWYVGEGMEEGEFSEA 87
H LM+ +RAF+HWY EGM+ +F EA
Sbjct: 289 HYKLMFRRRAFLHWYTEEGMDSQQFEEA 316
>SB_25311| Best HMM Match : Tubulin (HMM E-Value=0)
Length = 629
Score = 36.3 bits (80), Expect = 0.009
Identities = 13/25 (52%), Positives = 19/25 (76%)
Frame = +1
Query: 16 MYAKRAFVHWYVGEGMEEGEFSEAR 90
M+ +RAF+HWY EGM+ EF+E +
Sbjct: 207 MFRRRAFLHWYTTEGMDPLEFTEIK 231
>SB_56951| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 815
Score = 27.9 bits (59), Expect = 3.1
Identities = 17/54 (31%), Positives = 26/54 (48%)
Frame = +1
Query: 22 AKRAFVHWYVGEGMEEGEFSEARE*LGRSREVTTKKSAWTPPRERVREPKSTKP 183
A R F + + MEE + S + + L S E ++A P RE+V S +P
Sbjct: 484 ACRFFSNQIIASQMEEPQGSTSAQHLAESDEKAAGQTAHEPAREKVERITSPEP 537
>SB_4344| Best HMM Match : zf-C2H2 (HMM E-Value=0)
Length = 1080
Score = 27.5 bits (58), Expect = 4.0
Identities = 13/26 (50%), Positives = 15/26 (57%)
Frame = +1
Query: 103 RSREVTTKKSAWTPPRERVREPKSTK 180
R R T S PPR+R R+PKS K
Sbjct: 514 RGRPPTRSNSKKQPPRKRGRKPKSEK 539
>SB_53570| Best HMM Match : Y_phosphatase (HMM E-Value=0)
Length = 2064
Score = 27.5 bits (58), Expect = 4.0
Identities = 11/21 (52%), Positives = 14/21 (66%)
Frame = +1
Query: 100 GRSREVTTKKSAWTPPRERVR 162
GRSR+ TT + +W PPR R
Sbjct: 647 GRSRDSTTLEISWDPPRPEHR 667
>SB_44822| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 184
Score = 26.6 bits (56), Expect = 7.1
Identities = 10/17 (58%), Positives = 12/17 (70%)
Frame = +1
Query: 172 STKPMNMFEGGSHTDTF 222
S K + FEGGSH DT+
Sbjct: 88 SLKKLEQFEGGSHNDTW 104
>SB_33019| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 877
Score = 26.6 bits (56), Expect = 7.1
Identities = 12/31 (38%), Positives = 18/31 (58%)
Frame = -1
Query: 224 GNVSVCEPPSNIFIGLVLFGSLTLSLGGVHA 132
GN+S+ P + +G VLF + +LG HA
Sbjct: 790 GNISLLAGPHSGLLGNVLFSLVPRALGNYHA 820
>SB_19987| Best HMM Match : MFMR (HMM E-Value=1.4)
Length = 330
Score = 26.6 bits (56), Expect = 7.1
Identities = 16/47 (34%), Positives = 21/47 (44%)
Frame = +1
Query: 148 RERVREPKSTKPMNMFEGGSHTDTFPGEIXXXXXXXXXXXXSRLVLS 288
RE+ RE STKP GG+HT G+I S V++
Sbjct: 48 REKPRE--STKPEEKPSGGNHTSQEKGKISSLTSEGARVTTSTAVVT 92
>SB_1527| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 826
Score = 26.2 bits (55), Expect = 9.3
Identities = 15/45 (33%), Positives = 23/45 (51%)
Frame = +1
Query: 49 VGEGMEEGEFSEARE*LGRSREVTTKKSAWTPPRERVREPKSTKP 183
V MEE + S + + L S E +++A P RE+V S +P
Sbjct: 766 VASQMEEPQGSISAQHLAESDEQAAEQTAHEPAREKVERITSPEP 810
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,162,709
Number of Sequences: 59808
Number of extensions: 136816
Number of successful extensions: 494
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 440
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 494
length of database: 16,821,457
effective HSP length: 74
effective length of database: 12,395,665
effective search space used: 669365910
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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