Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0001_J05
(386 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g19780.1 68418.m02351 tubulin alpha-3/alpha-5 chain (TUA5) ne... 65 1e-11
At5g19770.1 68418.m02350 tubulin alpha-3/alpha-5 chain (TUA3) ne... 65 1e-11
At4g14960.2 68417.m02299 tubulin alpha-6 chain (TUA6) nearly ide... 65 1e-11
At1g50010.1 68414.m05612 tubulin alpha-2/alpha-4 chain (TUA2) id... 65 1e-11
At1g04820.1 68414.m00478 tubulin alpha-2/alpha-4 chain (TUA4) ne... 65 1e-11
At1g64740.1 68414.m07340 tubulin alpha-1 chain (TUA1) nearly ide... 64 3e-11
At5g62700.1 68418.m07868 tubulin beta-2/beta-3 chain (TUB3) near... 42 1e-04
At5g62690.1 68418.m07867 tubulin beta-2/beta-3 chain (TUB2) near... 42 1e-04
At5g44340.1 68418.m05429 tubulin beta-4 chain (TUB4) nearly iden... 42 1e-04
At5g23860.1 68418.m02801 tubulin beta-8 chain (TUB8) (TUBB8) ide... 42 1e-04
At5g12250.1 68418.m01439 tubulin beta-6 chain (TUB6) nearly iden... 42 1e-04
At4g20890.1 68417.m03029 tubulin beta-9 chain (TUB9) nearly iden... 42 1e-04
At2g29550.1 68415.m03589 tubulin beta-7 chain (TUB7) identical t... 42 1e-04
At1g75780.1 68414.m08801 tubulin beta-1 chain (TUB1) nearly iden... 42 1e-04
At1g20010.1 68414.m02506 tubulin beta-5 chain (TUB5) nearly iden... 42 1e-04
At5g16220.1 68418.m01895 octicosapeptide/Phox/Bem1p (PB1) domain... 28 1.9
At2g45000.1 68415.m05603 expressed protein contains Pfam profile... 27 3.3
At3g18710.1 68416.m02376 U-box domain-containing protein similar... 27 4.4
At4g37440.1 68417.m05299 expressed protein 27 5.8
At4g20190.1 68417.m02952 hypothetical protein 27 5.8
At1g33960.1 68414.m04209 avirulence-responsive protein / avirule... 27 5.8
At4g11850.1 68417.m01886 phospholipase D gamma 1 / PLD gamma 1 (... 26 7.6
At2g27350.5 68415.m03295 OTU-like cysteine protease family prote... 26 7.6
At2g27350.4 68415.m03294 OTU-like cysteine protease family prote... 26 7.6
At2g27350.3 68415.m03293 OTU-like cysteine protease family prote... 26 7.6
At2g27350.2 68415.m03292 OTU-like cysteine protease family prote... 26 7.6
At2g27350.1 68415.m03291 OTU-like cysteine protease family prote... 26 7.6
>At5g19780.1 68418.m02351 tubulin alpha-3/alpha-5 chain (TUA5)
nearly identical to SP|P20363 Tubulin alpha-3/alpha-5
chain {Arabidopsis thaliana}
Length = 450
Score = 65.3 bits (152), Expect = 1e-11
Identities = 28/28 (100%), Positives = 28/28 (100%)
Frame = +1
Query: 10 DLMYAKRAFVHWYVGEGMEEGEFSEARE 93
DLMYAKRAFVHWYVGEGMEEGEFSEARE
Sbjct: 396 DLMYAKRAFVHWYVGEGMEEGEFSEARE 423
>At5g19770.1 68418.m02350 tubulin alpha-3/alpha-5 chain (TUA3)
nearly identical to SP|P20363 Tubulin alpha-3/alpha-5
chain {Arabidopsis thaliana}
Length = 450
Score = 65.3 bits (152), Expect = 1e-11
Identities = 28/28 (100%), Positives = 28/28 (100%)
Frame = +1
Query: 10 DLMYAKRAFVHWYVGEGMEEGEFSEARE 93
DLMYAKRAFVHWYVGEGMEEGEFSEARE
Sbjct: 396 DLMYAKRAFVHWYVGEGMEEGEFSEARE 423
>At4g14960.2 68417.m02299 tubulin alpha-6 chain (TUA6) nearly
identical to SP|P29511 Tubulin alpha-6 chain
{Arabidopsis thaliana}
Length = 450
Score = 65.3 bits (152), Expect = 1e-11
Identities = 28/28 (100%), Positives = 28/28 (100%)
Frame = +1
Query: 10 DLMYAKRAFVHWYVGEGMEEGEFSEARE 93
DLMYAKRAFVHWYVGEGMEEGEFSEARE
Sbjct: 396 DLMYAKRAFVHWYVGEGMEEGEFSEARE 423
>At1g50010.1 68414.m05612 tubulin alpha-2/alpha-4 chain (TUA2)
identical to tubulin alpha-2/alpha-4 chain SP|P29510
GB:P29510 from [Arabidopsis thaliana]
Length = 450
Score = 65.3 bits (152), Expect = 1e-11
Identities = 28/28 (100%), Positives = 28/28 (100%)
Frame = +1
Query: 10 DLMYAKRAFVHWYVGEGMEEGEFSEARE 93
DLMYAKRAFVHWYVGEGMEEGEFSEARE
Sbjct: 396 DLMYAKRAFVHWYVGEGMEEGEFSEARE 423
>At1g04820.1 68414.m00478 tubulin alpha-2/alpha-4 chain (TUA4)
nearly identical to SP:P29510 Tubulin alpha-2/alpha-4
chain from [Arabidopsis thaliana]
Length = 450
Score = 65.3 bits (152), Expect = 1e-11
Identities = 28/28 (100%), Positives = 28/28 (100%)
Frame = +1
Query: 10 DLMYAKRAFVHWYVGEGMEEGEFSEARE 93
DLMYAKRAFVHWYVGEGMEEGEFSEARE
Sbjct: 396 DLMYAKRAFVHWYVGEGMEEGEFSEARE 423
>At1g64740.1 68414.m07340 tubulin alpha-1 chain (TUA1) nearly
identical to SP|P11139 Tubulin alpha-1 chain
{Arabidopsis thaliana}
Length = 450
Score = 64.1 bits (149), Expect = 3e-11
Identities = 27/28 (96%), Positives = 28/28 (100%)
Frame = +1
Query: 10 DLMYAKRAFVHWYVGEGMEEGEFSEARE 93
DLMY+KRAFVHWYVGEGMEEGEFSEARE
Sbjct: 396 DLMYSKRAFVHWYVGEGMEEGEFSEARE 423
>At5g62700.1 68418.m07868 tubulin beta-2/beta-3 chain (TUB3) nearly
identical to SP|P29512 Tubulin beta-2/beta-3 chain
{Arabidopsis thaliana}
Length = 450
Score = 42.3 bits (95), Expect = 1e-04
Identities = 15/24 (62%), Positives = 21/24 (87%)
Frame = +1
Query: 16 MYAKRAFVHWYVGEGMEEGEFSEA 87
M+ ++AF+HWY GEGM+E EF+EA
Sbjct: 388 MFRRKAFLHWYTGEGMDEMEFTEA 411
>At5g62690.1 68418.m07867 tubulin beta-2/beta-3 chain (TUB2) nearly
identical to SP|P29512 Tubulin beta-2/beta-3 chain
{Arabidopsis thaliana}
Length = 450
Score = 42.3 bits (95), Expect = 1e-04
Identities = 15/24 (62%), Positives = 21/24 (87%)
Frame = +1
Query: 16 MYAKRAFVHWYVGEGMEEGEFSEA 87
M+ ++AF+HWY GEGM+E EF+EA
Sbjct: 388 MFRRKAFLHWYTGEGMDEMEFTEA 411
>At5g44340.1 68418.m05429 tubulin beta-4 chain (TUB4) nearly
identical to SP|P24636 Tubulin beta-4 chain {Arabidopsis
thaliana}
Length = 444
Score = 42.3 bits (95), Expect = 1e-04
Identities = 15/24 (62%), Positives = 21/24 (87%)
Frame = +1
Query: 16 MYAKRAFVHWYVGEGMEEGEFSEA 87
M+ ++AF+HWY GEGM+E EF+EA
Sbjct: 388 MFRRKAFLHWYTGEGMDEMEFTEA 411
>At5g23860.1 68418.m02801 tubulin beta-8 chain (TUB8) (TUBB8)
identical to SP|P29516 Tubulin beta-8 chain {Arabidopsis
thaliana}; supporting cDNA gi|15451225|gb|AY054693.1|
Length = 449
Score = 42.3 bits (95), Expect = 1e-04
Identities = 15/24 (62%), Positives = 21/24 (87%)
Frame = +1
Query: 16 MYAKRAFVHWYVGEGMEEGEFSEA 87
M+ ++AF+HWY GEGM+E EF+EA
Sbjct: 388 MFRRKAFLHWYTGEGMDEMEFTEA 411
>At5g12250.1 68418.m01439 tubulin beta-6 chain (TUB6) nearly
identical to SP|P29514 Tubulin beta-6 chain {Arabidopsis
thaliana}
Length = 449
Score = 42.3 bits (95), Expect = 1e-04
Identities = 15/24 (62%), Positives = 21/24 (87%)
Frame = +1
Query: 16 MYAKRAFVHWYVGEGMEEGEFSEA 87
M+ ++AF+HWY GEGM+E EF+EA
Sbjct: 388 MFRRKAFLHWYTGEGMDEMEFTEA 411
>At4g20890.1 68417.m03029 tubulin beta-9 chain (TUB9) nearly
identical to SP|P29517 Tubulin beta-9 chain {Arabidopsis
thaliana}
Length = 444
Score = 42.3 bits (95), Expect = 1e-04
Identities = 15/24 (62%), Positives = 21/24 (87%)
Frame = +1
Query: 16 MYAKRAFVHWYVGEGMEEGEFSEA 87
M+ ++AF+HWY GEGM+E EF+EA
Sbjct: 388 MFRRKAFLHWYTGEGMDEMEFTEA 411
>At2g29550.1 68415.m03589 tubulin beta-7 chain (TUB7) identical to
GB:M84704 SP|P29515 Tubulin beta-7 chain {Arabidopsis
thaliana}
Length = 449
Score = 42.3 bits (95), Expect = 1e-04
Identities = 15/24 (62%), Positives = 21/24 (87%)
Frame = +1
Query: 16 MYAKRAFVHWYVGEGMEEGEFSEA 87
M+ ++AF+HWY GEGM+E EF+EA
Sbjct: 388 MFRRKAFLHWYTGEGMDEMEFTEA 411
>At1g75780.1 68414.m08801 tubulin beta-1 chain (TUB1) nearly
identical to SP|P12411 Tubulin beta-1 chain {Arabidopsis
thaliana}
Length = 447
Score = 42.3 bits (95), Expect = 1e-04
Identities = 15/24 (62%), Positives = 21/24 (87%)
Frame = +1
Query: 16 MYAKRAFVHWYVGEGMEEGEFSEA 87
M+ ++AF+HWY GEGM+E EF+EA
Sbjct: 389 MFRRKAFLHWYTGEGMDEMEFTEA 412
>At1g20010.1 68414.m02506 tubulin beta-5 chain (TUB5) nearly
identical to SP|P29513 Tubulin beta-5 chain {Arabidopsis
thaliana}
Length = 449
Score = 42.3 bits (95), Expect = 1e-04
Identities = 15/24 (62%), Positives = 21/24 (87%)
Frame = +1
Query: 16 MYAKRAFVHWYVGEGMEEGEFSEA 87
M+ ++AF+HWY GEGM+E EF+EA
Sbjct: 389 MFRRKAFLHWYTGEGMDEMEFTEA 412
>At5g16220.1 68418.m01895 octicosapeptide/Phox/Bem1p (PB1)
domain-containing protein hypothetical proteins -
Arabidopsis thaliana contains Pfam profile PF00564: PB1
domain
Length = 476
Score = 28.3 bits (60), Expect = 1.9
Identities = 12/19 (63%), Positives = 13/19 (68%)
Frame = -1
Query: 119 VTSRERPSHSRASENSPSS 63
+ S E PSHS A EN PSS
Sbjct: 282 IPSHELPSHSHAFENKPSS 300
>At2g45000.1 68415.m05603 expressed protein contains Pfam profile:
PF05064 Nsp1-like C-terminal region
Length = 739
Score = 27.5 bits (58), Expect = 3.3
Identities = 15/32 (46%), Positives = 18/32 (56%)
Frame = +2
Query: 5 TRT*CTLSAPSCTGTSVRVWRRVSSPKLVSDL 100
T T TL PS +GTS V SPKL S++
Sbjct: 507 TTTQTTLVVPSSSGTSTAVAPVAGSPKLPSEI 538
>At3g18710.1 68416.m02376 U-box domain-containing protein similar to
immediate-early fungal elicitor protein CMPG1
[Petroselinum crispum] GI:14582200; contains Pfam
profile PF04564: U-box domain
Length = 415
Score = 27.1 bits (57), Expect = 4.4
Identities = 13/33 (39%), Positives = 21/33 (63%)
Frame = -3
Query: 105 AAKSLTSFGELTLLHTLTDVPVHEGALSVHQVL 7
AAK++T ++ L TLT+V V E +L + + L
Sbjct: 273 AAKAITKIKDILLTETLTNVAVTEKSLKLLETL 305
>At4g37440.1 68417.m05299 expressed protein
Length = 471
Score = 26.6 bits (56), Expect = 5.8
Identities = 17/44 (38%), Positives = 24/44 (54%), Gaps = 2/44 (4%)
Frame = +1
Query: 61 MEEGEFSEARE*LGRSREVTTKKSAWTPPRERV--REPKSTKPM 186
+EEG R+ R+RE+ TK+ + P R RV +PKS M
Sbjct: 404 IEEGPSRPVRKRTPRNREIITKEES-NPKRRRVSREKPKSNAVM 446
>At4g20190.1 68417.m02952 hypothetical protein
Length = 389
Score = 26.6 bits (56), Expect = 5.8
Identities = 14/27 (51%), Positives = 16/27 (59%), Gaps = 1/27 (3%)
Frame = -1
Query: 113 SRERPSHSRASENSPSSIP-SPTYQCT 36
S E P H R S +SP S P SPT+ T
Sbjct: 344 SMESPRHVRFSTSSPVSYPTSPTHSIT 370
>At1g33960.1 68414.m04209 avirulence-responsive protein / avirulence
induced gene (AIG1) identical to AIG1 (exhibits RPS2-
and avrRpt2-dependent induction early after infection
with Pseudomonas) SP:U40856 [Arabidopsis thaliana]
(Plant Cell 8 (2), 241-249 (1996))
Length = 353
Score = 26.6 bits (56), Expect = 5.8
Identities = 14/31 (45%), Positives = 19/31 (61%)
Frame = -1
Query: 188 FIGLVLFGSLTLSLGGVHADFFVVTSRERPS 96
FIG + LTL+ GG+HA V++ R R S
Sbjct: 111 FIGKEIVKCLTLADGGLHAVLLVLSVRTRIS 141
>At4g11850.1 68417.m01886 phospholipase D gamma 1 / PLD gamma 1
(PLDGAMMA1) identical to phospholipase D gamma 1
SP:Q9T053 from [Arabidopsis thaliana]
Length = 858
Score = 26.2 bits (55), Expect = 7.6
Identities = 13/41 (31%), Positives = 21/41 (51%)
Frame = -1
Query: 131 DFFVVTSRERPSHSRASENSPSSIPSPTYQCTKARLAYIKS 9
+FF + +RE P + + NSP P P A++ +KS
Sbjct: 661 NFFCLGTREVPVGTVSVYNSPRKPPQPNANANAAQVQALKS 701
>At2g27350.5 68415.m03295 OTU-like cysteine protease family protein
contains Pfam profile PF02338: OTU-like cysteine
protease
Length = 388
Score = 26.2 bits (55), Expect = 7.6
Identities = 10/18 (55%), Positives = 14/18 (77%)
Frame = +1
Query: 172 STKPMNMFEGGSHTDTFP 225
ST+P+N+F+G TDT P
Sbjct: 305 STEPINIFQGNYSTDTPP 322
>At2g27350.4 68415.m03294 OTU-like cysteine protease family protein
contains Pfam profile PF02338: OTU-like cysteine
protease
Length = 388
Score = 26.2 bits (55), Expect = 7.6
Identities = 10/18 (55%), Positives = 14/18 (77%)
Frame = +1
Query: 172 STKPMNMFEGGSHTDTFP 225
ST+P+N+F+G TDT P
Sbjct: 305 STEPINIFQGNYSTDTPP 322
>At2g27350.3 68415.m03293 OTU-like cysteine protease family protein
contains Pfam profile PF02338: OTU-like cysteine
protease
Length = 506
Score = 26.2 bits (55), Expect = 7.6
Identities = 10/18 (55%), Positives = 14/18 (77%)
Frame = +1
Query: 172 STKPMNMFEGGSHTDTFP 225
ST+P+N+F+G TDT P
Sbjct: 305 STEPINIFQGNYSTDTPP 322
>At2g27350.2 68415.m03292 OTU-like cysteine protease family protein
contains Pfam profile PF02338: OTU-like cysteine
protease
Length = 505
Score = 26.2 bits (55), Expect = 7.6
Identities = 10/18 (55%), Positives = 14/18 (77%)
Frame = +1
Query: 172 STKPMNMFEGGSHTDTFP 225
ST+P+N+F+G TDT P
Sbjct: 305 STEPINIFQGNYSTDTPP 322
>At2g27350.1 68415.m03291 OTU-like cysteine protease family protein
contains Pfam profile PF02338: OTU-like cysteine
protease
Length = 505
Score = 26.2 bits (55), Expect = 7.6
Identities = 10/18 (55%), Positives = 14/18 (77%)
Frame = +1
Query: 172 STKPMNMFEGGSHTDTFP 225
ST+P+N+F+G TDT P
Sbjct: 305 STEPINIFQGNYSTDTPP 322
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,388,914
Number of Sequences: 28952
Number of extensions: 98290
Number of successful extensions: 334
Number of sequences better than 10.0: 27
Number of HSP's better than 10.0 without gapping: 327
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 334
length of database: 12,070,560
effective HSP length: 73
effective length of database: 9,957,064
effective search space used: 547638520
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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