Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_J04
         (439 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC11C11.09c |rpl502|rpl5-2, rpl5b|60S ribosomal protein L5|Sch...   157   9e-40
SPAC3H5.12c |rpl501|rpl5-1, rpl5|60S ribosomal protein L5|Schizo...   157   9e-40
SPBC354.03 |swd3||WD repeat protein Swd3|Schizosaccharomyces pom...    26   2.2  
SPAC1687.20c |mis6||inner centromere protein Mis6|Schizosaccharo...    26   2.9  
SPAC1006.03c |||human CCDC131 homolog|Schizosaccharomyces pombe|...    25   6.7  
SPBC21.03c |||DUF55 family protein|Schizosaccharomyces pombe|chr...    24   8.9  
SPAC16C9.06c |upf1||ATP-dependent RNA helicase Upf1|Schizosaccha...    24   8.9  

>SPBC11C11.09c |rpl502|rpl5-2, rpl5b|60S ribosomal protein
           L5|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 294

 Score =  157 bits (380), Expect = 9e-40
 Identities = 71/127 (55%), Positives = 85/127 (66%)
 Frame = +1

Query: 58  MGFVKVVKNKQYFKRYQVKFKRRREGKTDYYARKRLVVQDKNKYNTPKYRLIVRLSNKDV 237
           M F+K VK+  YF RYQ K++RRREGKTDYYARKRL+ Q KNKYN PKYRL+VR SN+ V
Sbjct: 1   MPFIKAVKSSPYFSRYQTKYRRRREGKTDYYARKRLIAQAKNKYNAPKYRLVVRFSNRFV 60

Query: 238 TCQVAYSRIEGDHIVCAAYSHELPRYGINVGLTNYAAAYCTGXXXXXXXXXXXXXDSLYP 417
           TCQ+  SR+ GD+++  A+S ELPRYGI  GL N+ AAY TG                Y 
Sbjct: 61  TCQIVSSRVNGDYVLAHAHSSELPRYGIKWGLANWTAAYATGLLVARRALAKVGLADKYE 120

Query: 418 GATEVTG 438
           G TE  G
Sbjct: 121 GVTEPEG 127


>SPAC3H5.12c |rpl501|rpl5-1, rpl5|60S ribosomal protein
           L5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 294

 Score =  157 bits (380), Expect = 9e-40
 Identities = 71/127 (55%), Positives = 85/127 (66%)
 Frame = +1

Query: 58  MGFVKVVKNKQYFKRYQVKFKRRREGKTDYYARKRLVVQDKNKYNTPKYRLIVRLSNKDV 237
           M F+K VK+  YF RYQ K++RRREGKTDYYARKRL+ Q KNKYN PKYRL+VR SN+ V
Sbjct: 1   MPFIKAVKSSPYFSRYQTKYRRRREGKTDYYARKRLIAQAKNKYNAPKYRLVVRFSNRFV 60

Query: 238 TCQVAYSRIEGDHIVCAAYSHELPRYGINVGLTNYAAAYCTGXXXXXXXXXXXXXDSLYP 417
           TCQ+  SR+ GD+++  A+S ELPRYGI  GL N+ AAY TG                Y 
Sbjct: 61  TCQIVSSRVNGDYVLAHAHSSELPRYGIKWGLANWTAAYATGLLVARRALAKVGLADKYE 120

Query: 418 GATEVTG 438
           G TE  G
Sbjct: 121 GVTEPEG 127


>SPBC354.03 |swd3||WD repeat protein Swd3|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 380

 Score = 26.2 bits (55), Expect = 2.2
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = -2

Query: 426 SGTWVETVQAEPLQQSSCQQQTSAVGSSIVS 334
           SG+W ETV+   LQ  +C +   A    I+S
Sbjct: 155 SGSWDETVRIWNLQDGTCLRMLPAHSEPIIS 185


>SPAC1687.20c |mis6||inner centromere protein
           Mis6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 672

 Score = 25.8 bits (54), Expect = 2.9
 Identities = 13/28 (46%), Positives = 17/28 (60%), Gaps = 1/28 (3%)
 Frame = -3

Query: 239 VTSLLD-NRTISRYFGVLYLFLSWTTRR 159
           V   LD N  + RY+GVL+ FL + T R
Sbjct: 120 VYEFLDGNNLLCRYYGVLFHFLDFLTLR 147


>SPAC1006.03c |||human CCDC131 homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 714

 Score = 24.6 bits (51), Expect = 6.7
 Identities = 11/40 (27%), Positives = 20/40 (50%)
 Frame = +1

Query: 73  VVKNKQYFKRYQVKFKRRREGKTDYYARKRLVVQDKNKYN 192
           + K +    +YQ   K + E  T  Y RK+ +++ + K N
Sbjct: 485 IEKEEGELTKYQTLVKSKTEILTQLYTRKKQLLEQQGKGN 524


>SPBC21.03c |||DUF55 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 239

 Score = 24.2 bits (50), Expect = 8.9
 Identities = 10/35 (28%), Positives = 17/35 (48%)
 Frame = -1

Query: 223 ITVQSVGTLECCICFYPGQRGVCEHSSQFFPHDAS 119
           I +     L C  C +P  +G+C+  S   P D++
Sbjct: 62  IKIGDYAFLYCSNCKFPHIKGLCQICSNSHPDDSA 96


>SPAC16C9.06c |upf1||ATP-dependent RNA helicase
            Upf1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 925

 Score = 24.2 bits (50), Expect = 8.9
 Identities = 11/41 (26%), Positives = 22/41 (53%), Gaps = 2/41 (4%)
 Frame = +1

Query: 82   NKQYFKRYQV--KFKRRREGKTDYYARKRLVVQDKNKYNTP 198
            +  Y + + V  ++KRR    TD+   +  V  D++K++ P
Sbjct: 882  SSSYLEEWNVFAQYKRRESNATDFEDFRSQVGDDESKFDEP 922


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,842,676
Number of Sequences: 5004
Number of extensions: 35501
Number of successful extensions: 84
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 84
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 84
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 158122380
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)