Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_J04
         (439 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_1659 + 38961637-38961639,38962361-38962433,38962531-389626...   163   7e-41
01_06_1660 + 38966999-38967001,38967685-38967757,38967841-389679...   159   7e-40
03_02_0719 + 10654842-10654977,10655039-10655124,10655226-106570...    29   2.2  
08_02_1410 - 26876243-26876497,26877129-26877239,26877240-268773...    28   3.8  
01_05_0510 - 22816607-22816916,22817005-22817177,22817341-228176...    27   8.7  

>01_06_1659 +
           38961637-38961639,38962361-38962433,38962531-38962613,
           38962732-38962858,38962950-38963029,38963112-38963228,
           38963393-38963527,38963714-38963883,38963970-38964087
          Length = 301

 Score =  163 bits (395), Expect = 7e-41
 Identities = 77/126 (61%), Positives = 87/126 (69%)
 Frame = +1

Query: 61  GFVKVVKNKQYFKRYQVKFKRRREGKTDYYARKRLVVQDKNKYNTPKYRLIVRLSNKDVT 240
           GFVK  K   YFKR+QVKFKRRR+GKTDY AR RL  QDKNKYNTPKYR +   +NKD+T
Sbjct: 3   GFVKTQKTHAYFKRFQVKFKRRRQGKTDYRARIRLTNQDKNKYNTPKYRFV---TNKDIT 59

Query: 241 CQVAYSRIEGDHIVCAAYSHELPRYGINVGLTNYAAAYCTGXXXXXXXXXXXXXDSLYPG 420
            Q+ Y+ I GD ++ AAYSHELPRYG+ VGLTNYAAAYCTG             D  Y G
Sbjct: 60  AQIVYATIAGDIVMAAAYSHELPRYGLEVGLTNYAAAYCTGLLLARRVLTLRGLDQEYEG 119

Query: 421 ATEVTG 438
             E TG
Sbjct: 120 NVEATG 125


>01_06_1660 +
           38966999-38967001,38967685-38967757,38967841-38967923,
           38968042-38968168,38968260-38968339,38968428-38968544,
           38968711-38968845,38969046-38969215,38969300-38969417
          Length = 301

 Score =  159 bits (387), Expect = 7e-40
 Identities = 76/126 (60%), Positives = 86/126 (68%)
 Frame = +1

Query: 61  GFVKVVKNKQYFKRYQVKFKRRREGKTDYYARKRLVVQDKNKYNTPKYRLIVRLSNKDVT 240
           GFVK  K   Y KR+QVKFKRRR+GKTDY AR RL  QDKNKYNTPKYR +   +NKD+T
Sbjct: 3   GFVKTQKTNAYHKRFQVKFKRRRQGKTDYRARIRLTNQDKNKYNTPKYRFV---TNKDIT 59

Query: 241 CQVAYSRIEGDHIVCAAYSHELPRYGINVGLTNYAAAYCTGXXXXXXXXXXXXXDSLYPG 420
            Q+ Y+ I GD ++ AAYSHELPRYG+ VGLTNYAAAYCTG             D  Y G
Sbjct: 60  AQIVYATIAGDIVMAAAYSHELPRYGLEVGLTNYAAAYCTGLLLARRVLKLRGLDQEYEG 119

Query: 421 ATEVTG 438
             E TG
Sbjct: 120 NIEATG 125


>03_02_0719 +
           10654842-10654977,10655039-10655124,10655226-10657001,
           10657782-10657926,10658017-10658735
          Length = 953

 Score = 28.7 bits (61), Expect = 2.2
 Identities = 12/23 (52%), Positives = 15/23 (65%), Gaps = 1/23 (4%)
 Frame = +2

Query: 335 LTMLLPTAL-VCCWQEDCCRGSA 400
           L++L PT L   CW  DCC GS+
Sbjct: 691 LSVLEPTFLNESCWSSDCCSGSS 713


>08_02_1410 -
           26876243-26876497,26877129-26877239,26877240-26877324,
           26877620-26877672,26878318-26878440,26878514-26878597,
           26878708-26878773,26879512-26879584,26879854-26879888,
           26879970-26880212
          Length = 375

 Score = 27.9 bits (59), Expect = 3.8
 Identities = 15/43 (34%), Positives = 23/43 (53%), Gaps = 2/43 (4%)
 Frame = +1

Query: 184 KYNTPKYRLIVRLSNKDVTCQVAYSRI--EGDHIVCAAYSHEL 306
           +YNT +YR +  +S K V C+ +   +  E DH+   A S  L
Sbjct: 274 RYNTSRYRELPHISIKCVFCKASVEPMGEESDHVHIIALSDAL 316


>01_05_0510 -
           22816607-22816916,22817005-22817177,22817341-22817607,
           22817951-22818393,22818474-22818635,22820991-22821414,
           22823177-22823227
          Length = 609

 Score = 26.6 bits (56), Expect = 8.7
 Identities = 12/36 (33%), Positives = 20/36 (55%)
 Frame = -2

Query: 438 TSDFSGTWVETVQAEPLQQSSCQQQTSAVGSSIVSQ 331
           +S  S TW E  +A P  QSS  Q+   + + +V++
Sbjct: 102 SSSSSSTWSELQRAMPAAQSSWSQRNYPIQADVVAK 137


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,831,788
Number of Sequences: 37544
Number of extensions: 225211
Number of successful extensions: 526
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 511
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 522
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 823860276
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)