Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_J04
         (439 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_35225| Best HMM Match : Ribosomal_L18p (HMM E-Value=4e-30)          83   7e-17
SB_12441| Best HMM Match : Ribosomal_L18p (HMM E-Value=0)              81   5e-16
SB_25925| Best HMM Match : No HMM Matches (HMM E-Value=.)              32   0.24 
SB_24452| Best HMM Match : PKD_channel (HMM E-Value=0)                 29   2.2  
SB_11523| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.2  
SB_4647| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   3.9  
SB_16955| Best HMM Match : SLAP (HMM E-Value=0.048)                    28   3.9  
SB_42238| Best HMM Match : Trypsin (HMM E-Value=0)                     27   5.1  
SB_54131| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   5.1  
SB_25649| Best HMM Match : Trypsin (HMM E-Value=0)                     27   5.1  
SB_17985| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   6.8  
SB_50009| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.9  

>SB_35225| Best HMM Match : Ribosomal_L18p (HMM E-Value=4e-30)
          Length = 113

 Score = 83.4 bits (197), Expect = 7e-17
 Identities = 35/64 (54%), Positives = 43/64 (67%)
 Frame = +1

Query: 247 VAYSRIEGDHIVCAAYSHELPRYGINVGLTNYAAAYCTGXXXXXXXXXXXXXDSLYPGAT 426
           +AY+++EGD I+CAAY+HELPRYG+ VGLTNYAAAYCTG               +Y G  
Sbjct: 1   IAYAKLEGDVIICAAYAHELPRYGVKVGLTNYAAAYCTGLLLARRLLTKLNLHEIYTGTE 60

Query: 427 EVTG 438
           EV G
Sbjct: 61  EVNG 64


>SB_12441| Best HMM Match : Ribosomal_L18p (HMM E-Value=0)
          Length = 328

 Score = 80.6 bits (190), Expect = 5e-16
 Identities = 32/42 (76%), Positives = 38/42 (90%)
 Frame = +1

Query: 121 RRREGKTDYYARKRLVVQDKNKYNTPKYRLIVRLSNKDVTCQ 246
           RR +GKTDYYARKRL+ QDKNKYNTPKYR +VR++NKD+ CQ
Sbjct: 17  RRSQGKTDYYARKRLITQDKNKYNTPKYRFVVRITNKDIICQ 58


>SB_25925| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 415

 Score = 31.9 bits (69), Expect = 0.24
 Identities = 23/65 (35%), Positives = 36/65 (55%), Gaps = 1/65 (1%)
 Frame = +2

Query: 176 IKTNTTLQSTD*LYGYPIKMLPV-KLHTHALRAITLSVLPTLMNSHAMVSMWV*LTMLLP 352
           IK NT  ++T  L  + ++  PV K H    RA+ L    TL+N+   V++W+   +LL 
Sbjct: 333 IKGNTISENT--LSTFRVRNTPVSKQHDDINRALFLE--STLLNTFQNVALWLQKFLLLK 388

Query: 353 TALVC 367
            A+VC
Sbjct: 389 PAMVC 393


>SB_24452| Best HMM Match : PKD_channel (HMM E-Value=0)
          Length = 1433

 Score = 28.7 bits (61), Expect = 2.2
 Identities = 20/55 (36%), Positives = 26/55 (47%), Gaps = 2/55 (3%)
 Frame = -2

Query: 384 QSSCQQQTSAVGSSIVSQTHID--TIAWEFMRVGSTDNVIALNA*VCNLTGNIFI 226
           Q  C   T+  GS IV+   ID   +  E  R+G + NV  L   V  LTG + I
Sbjct: 378 QCLCDHLTAFGGSMIVAPNPIDFNKVFLEMSRLGESGNVAVLATIVSILTGYLVI 432


>SB_11523| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 411

 Score = 28.7 bits (61), Expect = 2.2
 Identities = 12/27 (44%), Positives = 18/27 (66%), Gaps = 1/27 (3%)
 Frame = +1

Query: 208 LIVRLSNKDVTCQVAYSRIEGD-HIVC 285
           L++ LS +D+TC V YS   G+ H +C
Sbjct: 108 LLLYLSKRDITCPVPYSSRNGELHTMC 134


>SB_4647| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2735

 Score = 27.9 bits (59), Expect = 3.9
 Identities = 12/32 (37%), Positives = 21/32 (65%)
 Frame = +1

Query: 76  VKNKQYFKRYQVKFKRRREGKTDYYARKRLVV 171
           VK+K+  KR   K KR+ + K+D + RK+ ++
Sbjct: 228 VKHKRKQKRKSAKHKRKHKRKSDKHKRKQTLI 259


>SB_16955| Best HMM Match : SLAP (HMM E-Value=0.048)
          Length = 1952

 Score = 27.9 bits (59), Expect = 3.9
 Identities = 11/29 (37%), Positives = 15/29 (51%)
 Frame = +1

Query: 61   GFVKVVKNKQYFKRYQVKFKRRREGKTDY 147
            GF++ +K +    RY VK  R R    DY
Sbjct: 1090 GFIEALKRRDVSSRYNVKHARFRRATNDY 1118


>SB_42238| Best HMM Match : Trypsin (HMM E-Value=0)
          Length = 657

 Score = 27.5 bits (58), Expect = 5.1
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = +1

Query: 214 VRLSNKDVTCQVAYSRIEGDHIVCAAY 294
           VRL ++D TC  +YS I  +  +CA Y
Sbjct: 405 VRLVSRD-TCNASYSGIINERYICAGY 430


>SB_54131| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3160

 Score = 27.5 bits (58), Expect = 5.1
 Identities = 12/34 (35%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
 Frame = +1

Query: 256 SRIEGDHIVCAAYSH-ELPRYGINVGLTNYAAAY 354
           ++  GDH+  A+YSH ++ R+ + + L    AAY
Sbjct: 133 AKYRGDHLDIASYSHQQIDRFAVLLDLWTNEAAY 166


>SB_25649| Best HMM Match : Trypsin (HMM E-Value=0)
          Length = 718

 Score = 27.5 bits (58), Expect = 5.1
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = +1

Query: 214 VRLSNKDVTCQVAYSRIEGDHIVCAAY 294
           VRL ++D TC  +YS I  +  +CA Y
Sbjct: 690 VRLVSRD-TCNASYSGIINERYICAGY 715


>SB_17985| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 818

 Score = 27.1 bits (57), Expect = 6.8
 Identities = 15/71 (21%), Positives = 37/71 (52%)
 Frame = +1

Query: 70  KVVKNKQYFKRYQVKFKRRREGKTDYYARKRLVVQDKNKYNTPKYRLIVRLSNKDVTCQV 249
           K +K+ Q+     V+F+  +E + D + R + ++QD N   T +  ++++  N+    ++
Sbjct: 400 KTMKSMQFKNEELVRFQYNQEDQVDDFKRLKKLIQD-NGLPTIEQVIVLQRQNESYREEL 458

Query: 250 AYSRIEGDHIV 282
              R E + ++
Sbjct: 459 MNERKEKERLL 469


>SB_50009| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 149

 Score = 26.6 bits (56), Expect = 8.9
 Identities = 22/82 (26%), Positives = 39/82 (47%), Gaps = 6/82 (7%)
 Frame = +1

Query: 55  KMGFVKVVKNKQYFKRYQVKFKRRREGKTDYYARKRLVVQD-KNKYNTP--KYRLIVR-- 219
           ++ F K  K   Y +  Q + + R EGK+  +  +R+  +   N  N P  K  + V   
Sbjct: 40  RVTFGKHFKGSLYIESTQRQKEERTEGKSAKHKDERVGKRCILNGLNVPQCKNSIYVNYE 99

Query: 220 -LSNKDVTCQVAYSRIEGDHIV 282
            LS K++TC   +   +GD ++
Sbjct: 100 LLSQKEITCPYTFPEGDGDILI 121


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,953,288
Number of Sequences: 59808
Number of extensions: 288719
Number of successful extensions: 684
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 633
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 684
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 847047381
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)