Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0001_J04
(439 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AB208980-1|BAD92217.1| 303|Homo sapiens ribosomal protein L5 va... 213 2e-55
BC132972-1|AAI32973.1| 297|Homo sapiens ribosomal protein L5 pr... 211 9e-55
BC132970-1|AAI32971.1| 297|Homo sapiens ribosomal protein L5 pr... 211 9e-55
BC109370-1|AAI09371.1| 297|Homo sapiens ribosomal protein L5 pr... 211 9e-55
AL162740-1|CAI22505.1| 297|Homo sapiens ribosomal protein L5 pr... 211 9e-55
AK222604-1|BAD96324.1| 297|Homo sapiens ribosomal protein L5 va... 211 9e-55
U14966-1|AAA85654.1| 297|Homo sapiens ribosomal protein L5 prot... 209 4e-54
BC001882-1|AAH01882.1| 101|Homo sapiens RPL5 protein protein. 189 3e-48
AL162740-2|CAI22506.1| 126|Homo sapiens ribosomal protein L5 pr... 108 9e-24
AJ417593-1|CAD10391.2| 4169|Homo sapiens ALMS1 protein protein. 29 9.3
>AB208980-1|BAD92217.1| 303|Homo sapiens ribosomal protein L5
variant protein.
Length = 303
Score = 213 bits (521), Expect = 2e-55
Identities = 94/131 (71%), Positives = 109/131 (83%)
Frame = +1
Query: 46 IF*KMGFVKVVKNKQYFKRYQVKFKRRREGKTDYYARKRLVVQDKNKYNTPKYRLIVRLS 225
+F +MGFVKVVKNK YFKRYQVKF+RRREGKTDYYARKRLV+QDKNKYNTPKYR+IVR++
Sbjct: 4 LFRRMGFVKVVKNKAYFKRYQVKFRRRREGKTDYYARKRLVIQDKNKYNTPKYRMIVRVT 63
Query: 226 NKDVTCQVAYSRIEGDHIVCAAYSHELPRYGINVGLTNYAAAYCTGXXXXXXXXXXXXXD 405
N+D+ CQ+AY+RIEGD IVCAAY+HELP+YG+ VGLTNYAAAYCTG D
Sbjct: 64 NRDIICQIAYARIEGDMIVCAAYAHELPKYGVKVGLTNYAAAYCTGLLLARRLLNRFGMD 123
Query: 406 SLYPGATEVTG 438
+Y G EVTG
Sbjct: 124 KIYEGQVEVTG 134
>BC132972-1|AAI32973.1| 297|Homo sapiens ribosomal protein L5
protein.
Length = 297
Score = 211 bits (515), Expect = 9e-55
Identities = 93/127 (73%), Positives = 106/127 (83%)
Frame = +1
Query: 58 MGFVKVVKNKQYFKRYQVKFKRRREGKTDYYARKRLVVQDKNKYNTPKYRLIVRLSNKDV 237
MGFVKVVKNK YFKRYQVKF+RRREGKTDYYARKRLV+QDKNKYNTPKYR+IVR++N+D+
Sbjct: 1 MGFVKVVKNKAYFKRYQVKFRRRREGKTDYYARKRLVIQDKNKYNTPKYRMIVRVTNRDI 60
Query: 238 TCQVAYSRIEGDHIVCAAYSHELPRYGINVGLTNYAAAYCTGXXXXXXXXXXXXXDSLYP 417
CQ+AY+RIEGD IVCAAY+HELP+YG+ VGLTNYAAAYCTG D +Y
Sbjct: 61 ICQIAYARIEGDMIVCAAYAHELPKYGVKVGLTNYAAAYCTGLLLARRLLNRFGMDKIYE 120
Query: 418 GATEVTG 438
G EVTG
Sbjct: 121 GQVEVTG 127
>BC132970-1|AAI32971.1| 297|Homo sapiens ribosomal protein L5
protein.
Length = 297
Score = 211 bits (515), Expect = 9e-55
Identities = 93/127 (73%), Positives = 106/127 (83%)
Frame = +1
Query: 58 MGFVKVVKNKQYFKRYQVKFKRRREGKTDYYARKRLVVQDKNKYNTPKYRLIVRLSNKDV 237
MGFVKVVKNK YFKRYQVKF+RRREGKTDYYARKRLV+QDKNKYNTPKYR+IVR++N+D+
Sbjct: 1 MGFVKVVKNKAYFKRYQVKFRRRREGKTDYYARKRLVIQDKNKYNTPKYRMIVRVTNRDI 60
Query: 238 TCQVAYSRIEGDHIVCAAYSHELPRYGINVGLTNYAAAYCTGXXXXXXXXXXXXXDSLYP 417
CQ+AY+RIEGD IVCAAY+HELP+YG+ VGLTNYAAAYCTG D +Y
Sbjct: 61 ICQIAYARIEGDMIVCAAYAHELPKYGVKVGLTNYAAAYCTGLLLARRLLNRFGMDKIYE 120
Query: 418 GATEVTG 438
G EVTG
Sbjct: 121 GQVEVTG 127
>BC109370-1|AAI09371.1| 297|Homo sapiens ribosomal protein L5
protein.
Length = 297
Score = 211 bits (515), Expect = 9e-55
Identities = 93/127 (73%), Positives = 106/127 (83%)
Frame = +1
Query: 58 MGFVKVVKNKQYFKRYQVKFKRRREGKTDYYARKRLVVQDKNKYNTPKYRLIVRLSNKDV 237
MGFVKVVKNK YFKRYQVKF+RRREGKTDYYARKRLV+QDKNKYNTPKYR+IVR++N+D+
Sbjct: 1 MGFVKVVKNKAYFKRYQVKFRRRREGKTDYYARKRLVIQDKNKYNTPKYRMIVRVTNRDI 60
Query: 238 TCQVAYSRIEGDHIVCAAYSHELPRYGINVGLTNYAAAYCTGXXXXXXXXXXXXXDSLYP 417
CQ+AY+RIEGD IVCAAY+HELP+YG+ VGLTNYAAAYCTG D +Y
Sbjct: 61 ICQIAYARIEGDMIVCAAYAHELPKYGVKVGLTNYAAAYCTGLLLARRLLNRFGMDKIYE 120
Query: 418 GATEVTG 438
G EVTG
Sbjct: 121 GQVEVTG 127
>AL162740-1|CAI22505.1| 297|Homo sapiens ribosomal protein L5
protein.
Length = 297
Score = 211 bits (515), Expect = 9e-55
Identities = 93/127 (73%), Positives = 106/127 (83%)
Frame = +1
Query: 58 MGFVKVVKNKQYFKRYQVKFKRRREGKTDYYARKRLVVQDKNKYNTPKYRLIVRLSNKDV 237
MGFVKVVKNK YFKRYQVKF+RRREGKTDYYARKRLV+QDKNKYNTPKYR+IVR++N+D+
Sbjct: 1 MGFVKVVKNKAYFKRYQVKFRRRREGKTDYYARKRLVIQDKNKYNTPKYRMIVRVTNRDI 60
Query: 238 TCQVAYSRIEGDHIVCAAYSHELPRYGINVGLTNYAAAYCTGXXXXXXXXXXXXXDSLYP 417
CQ+AY+RIEGD IVCAAY+HELP+YG+ VGLTNYAAAYCTG D +Y
Sbjct: 61 ICQIAYARIEGDMIVCAAYAHELPKYGVKVGLTNYAAAYCTGLLLARRLLNRFGMDKIYE 120
Query: 418 GATEVTG 438
G EVTG
Sbjct: 121 GQVEVTG 127
>AK222604-1|BAD96324.1| 297|Homo sapiens ribosomal protein L5
variant protein.
Length = 297
Score = 211 bits (515), Expect = 9e-55
Identities = 93/127 (73%), Positives = 106/127 (83%)
Frame = +1
Query: 58 MGFVKVVKNKQYFKRYQVKFKRRREGKTDYYARKRLVVQDKNKYNTPKYRLIVRLSNKDV 237
MGFVKVVKNK YFKRYQVKF+RRREGKTDYYARKRLV+QDKNKYNTPKYR+IVR++N+D+
Sbjct: 1 MGFVKVVKNKAYFKRYQVKFRRRREGKTDYYARKRLVIQDKNKYNTPKYRMIVRVTNRDI 60
Query: 238 TCQVAYSRIEGDHIVCAAYSHELPRYGINVGLTNYAAAYCTGXXXXXXXXXXXXXDSLYP 417
CQ+AY+RIEGD IVCAAY+HELP+YG+ VGLTNYAAAYCTG D +Y
Sbjct: 61 ICQIAYARIEGDMIVCAAYAHELPKYGVKVGLTNYAAAYCTGLLLARRLLNRFGMDKIYE 120
Query: 418 GATEVTG 438
G EVTG
Sbjct: 121 GQVEVTG 127
>U14966-1|AAA85654.1| 297|Homo sapiens ribosomal protein L5
protein.
Length = 297
Score = 209 bits (510), Expect = 4e-54
Identities = 92/127 (72%), Positives = 105/127 (82%)
Frame = +1
Query: 58 MGFVKVVKNKQYFKRYQVKFKRRREGKTDYYARKRLVVQDKNKYNTPKYRLIVRLSNKDV 237
MGFVKVVKNK YFKRYQVKF+RRREGKTDYYARKRLV+QDKNKYNTPKYR+IVR++N+D+
Sbjct: 1 MGFVKVVKNKAYFKRYQVKFRRRREGKTDYYARKRLVIQDKNKYNTPKYRMIVRVTNRDI 60
Query: 238 TCQVAYSRIEGDHIVCAAYSHELPRYGINVGLTNYAAAYCTGXXXXXXXXXXXXXDSLYP 417
CQ+AY+RIEGD IVCA Y+HELP+YG+ VGLTNYAAAYCTG D +Y
Sbjct: 61 ICQIAYARIEGDMIVCARYAHELPKYGVKVGLTNYAAAYCTGLLLARRLLNRFGMDKIYE 120
Query: 418 GATEVTG 438
G EVTG
Sbjct: 121 GQVEVTG 127
>BC001882-1|AAH01882.1| 101|Homo sapiens RPL5 protein protein.
Length = 101
Score = 189 bits (461), Expect = 3e-48
Identities = 82/98 (83%), Positives = 94/98 (95%)
Frame = +1
Query: 58 MGFVKVVKNKQYFKRYQVKFKRRREGKTDYYARKRLVVQDKNKYNTPKYRLIVRLSNKDV 237
MGFVKVVKNK YFKRYQVKF+RRREGKTDYYARKRLV+QDKNKYNTPKYR+IVR++N+D+
Sbjct: 1 MGFVKVVKNKAYFKRYQVKFRRRREGKTDYYARKRLVIQDKNKYNTPKYRMIVRVTNRDI 60
Query: 238 TCQVAYSRIEGDHIVCAAYSHELPRYGINVGLTNYAAA 351
CQ+AY+RIEGD IVCAAY+HELP+YG+ VGLTNYAAA
Sbjct: 61 ICQIAYARIEGDMIVCAAYAHELPKYGVKVGLTNYAAA 98
>AL162740-2|CAI22506.1| 126|Homo sapiens ribosomal protein L5
protein.
Length = 126
Score = 108 bits (259), Expect = 9e-24
Identities = 46/77 (59%), Positives = 57/77 (74%)
Frame = +1
Query: 208 LIVRLSNKDVTCQVAYSRIEGDHIVCAAYSHELPRYGINVGLTNYAAAYCTGXXXXXXXX 387
+IVR++N+D+ CQ+AY+RIEGD IVCAAY+HELP+YG+ VGLTNYAAAYCTG
Sbjct: 1 MIVRVTNRDIICQIAYARIEGDMIVCAAYAHELPKYGVKVGLTNYAAAYCTGLLLARRLL 60
Query: 388 XXXXXDSLYPGATEVTG 438
D +Y G EVTG
Sbjct: 61 NRFGMDKIYEGQVEVTG 77
>AJ417593-1|CAD10391.2| 4169|Homo sapiens ALMS1 protein protein.
Length = 4169
Score = 28.7 bits (61), Expect = 9.3
Identities = 20/73 (27%), Positives = 34/73 (46%)
Frame = +1
Query: 55 KMGFVKVVKNKQYFKRYQVKFKRRREGKTDYYARKRLVVQDKNKYNTPKYRLIVRLSNKD 234
K F+ + KNK K+ ++ +R + +KR ++K K YRL +L K
Sbjct: 4099 KRVFLAIQKNKPISKKEMIQRSKRIYEQLPEVQKKR--EEEKRKSEYKSYRLRAQLYKKR 4156
Query: 235 VTCQVAYSRIEGD 273
VT Q+ ++ D
Sbjct: 4157 VTNQLLGRKVPWD 4169
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 66,981,512
Number of Sequences: 237096
Number of extensions: 1348176
Number of successful extensions: 6771
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 6729
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6771
length of database: 76,859,062
effective HSP length: 83
effective length of database: 57,180,094
effective search space used: 3545165828
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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