Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_J04
         (439 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z49967-5|CAA90251.1|  293|Caenorhabditis elegans Hypothetical pr...   195   1e-50
AL132951-9|CAC44304.3|  553|Caenorhabditis elegans Hypothetical ...    29   1.5  
Z92806-5|CAB07255.2| 1251|Caenorhabditis elegans Hypothetical pr...    28   2.6  
AF022969-1|AAB69894.3|  391|Caenorhabditis elegans Hypothetical ...    27   6.0  

>Z49967-5|CAA90251.1|  293|Caenorhabditis elegans Hypothetical
           protein F54C9.5 protein.
          Length = 293

 Score =  195 bits (475), Expect = 1e-50
 Identities = 90/127 (70%), Positives = 100/127 (78%)
 Frame = +1

Query: 58  MGFVKVVKNKQYFKRYQVKFKRRREGKTDYYARKRLVVQDKNKYNTPKYRLIVRLSNKDV 237
           MG VKV+KNK YFKRYQVK +RRREGKTDYYARKRL VQDKNKYNTPKYRLIVR++NKDV
Sbjct: 1   MGLVKVIKNKAYFKRYQVKLRRRREGKTDYYARKRLTVQDKNKYNTPKYRLIVRITNKDV 60

Query: 238 TCQVAYSRIEGDHIVCAAYSHELPRYGINVGLTNYAAAYCTGXXXXXXXXXXXXXDSLYP 417
             Q+AYS+IEGD +V +AYSHELPRYG+ VGLTNYAAAY TG             DS Y 
Sbjct: 61  VAQLAYSKIEGDVVVASAYSHELPRYGLKVGLTNYAAAYATGLLLARRHLKTIGLDSTYK 120

Query: 418 GATEVTG 438
           G  E+TG
Sbjct: 121 GHEELTG 127


>AL132951-9|CAC44304.3|  553|Caenorhabditis elegans Hypothetical
           protein Y67H2A.2a protein.
          Length = 553

 Score = 29.1 bits (62), Expect = 1.5
 Identities = 16/38 (42%), Positives = 24/38 (63%)
 Frame = +1

Query: 37  ISGIF*KMGFVKVVKNKQYFKRYQVKFKRRREGKTDYY 150
           I  IF K+G V+  K +Q  +R+Q+KF   RE +T Y+
Sbjct: 405 IYSIFYKLGKVEE-KERQIIERFQIKF-HEREDRTRYF 440


>Z92806-5|CAB07255.2| 1251|Caenorhabditis elegans Hypothetical
           protein K10G4.5 protein.
          Length = 1251

 Score = 28.3 bits (60), Expect = 2.6
 Identities = 14/43 (32%), Positives = 24/43 (55%), Gaps = 3/43 (6%)
 Frame = +1

Query: 187 YNTPKYRLIVRLSNKDVTCQVAYSRIEGDHI---VCAAYSHEL 306
           YN P+YR +++L  K   C+     + GD++   +CA +  EL
Sbjct: 548 YNDPEYRNVMKLKIKSPICE--QCEVTGDNLPFGICAEHETEL 588


>AF022969-1|AAB69894.3|  391|Caenorhabditis elegans Hypothetical
           protein C29G2.5 protein.
          Length = 391

 Score = 27.1 bits (57), Expect = 6.0
 Identities = 14/31 (45%), Positives = 19/31 (61%)
 Frame = +1

Query: 178 KNKYNTPKYRLIVRLSNKDVTCQVAYSRIEG 270
           K+K  TP YRL++ L + D+T  V  S I G
Sbjct: 187 KSKSRTPTYRLMLILGSLDLTGLVISSLIPG 217


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,282,421
Number of Sequences: 27780
Number of extensions: 205184
Number of successful extensions: 484
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 468
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 484
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 745968860
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)