Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_J04
         (439 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g25520.1 68416.m03173 60S ribosomal protein L5 similar to 60S...   162   1e-40
At5g39740.1 68418.m04813 60S ribosomal protein L5 (RPL5B) riboso...   161   2e-40
At4g36540.2 68417.m05189 basic helix-loop-helix (bHLH) family pr...    28   2.4  
At4g36540.1 68417.m05188 basic helix-loop-helix (bHLH) family pr...    28   2.4  
At2g24180.1 68415.m02889 cytochrome P450 family protein                27   5.5  
At5g35753.1 68418.m04282 expressed protein                             27   7.3  
At1g77300.1 68414.m09002 SET domain-containing protein similar t...    26   9.7  

>At3g25520.1 68416.m03173 60S ribosomal protein L5 similar to 60S
           ribosomal protein L5 GB:P49625 from [Oryza sativa]
          Length = 301

 Score =  162 bits (393), Expect = 1e-40
 Identities = 74/127 (58%), Positives = 88/127 (69%)
 Frame = +1

Query: 58  MGFVKVVKNKQYFKRYQVKFKRRREGKTDYYARKRLVVQDKNKYNTPKYRLIVRLSNKDV 237
           M FVK  K+  YFKRYQVKF+RRR+GKTDY AR RL+ QDKNKYNTPKYR +VR +NKD+
Sbjct: 1   MVFVKSTKSNAYFKRYQVKFRRRRDGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDI 60

Query: 238 TCQVAYSRIEGDHIVCAAYSHELPRYGINVGLTNYAAAYCTGXXXXXXXXXXXXXDSLYP 417
             Q+  + I GD +  +AY+HELP+YG+ VGLTNYAAAYCTG             D  Y 
Sbjct: 61  VAQIVSASIAGDIVKASAYAHELPQYGLTVGLTNYAAAYCTGLLLARRVLKMLEMDDEYE 120

Query: 418 GATEVTG 438
           G  E TG
Sbjct: 121 GNVEATG 127


>At5g39740.1 68418.m04813 60S ribosomal protein L5 (RPL5B) ribosomal
           protein L5, rice
          Length = 301

 Score =  161 bits (391), Expect = 2e-40
 Identities = 74/127 (58%), Positives = 88/127 (69%)
 Frame = +1

Query: 58  MGFVKVVKNKQYFKRYQVKFKRRREGKTDYYARKRLVVQDKNKYNTPKYRLIVRLSNKDV 237
           M FVK  K+  YFKRYQVKF+RRR+GKTDY AR RL+ QDKNKYNTPKYR +VR +NKD+
Sbjct: 1   MVFVKSSKSNAYFKRYQVKFRRRRDGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDI 60

Query: 238 TCQVAYSRIEGDHIVCAAYSHELPRYGINVGLTNYAAAYCTGXXXXXXXXXXXXXDSLYP 417
             Q+  + I GD +  +AY+HELP+YG+ VGLTNYAAAYCTG             D  Y 
Sbjct: 61  VAQIVSASIAGDIVKASAYAHELPQYGLTVGLTNYAAAYCTGLLLARRVLKMLEMDDEYE 120

Query: 418 GATEVTG 438
           G  E TG
Sbjct: 121 GNVEATG 127


>At4g36540.2 68417.m05189 basic helix-loop-helix (bHLH) family
           protein contains Pfam domain, PF00010: Helix-loop-helix
           DNA-binding domain
          Length = 302

 Score = 28.3 bits (60), Expect = 2.4
 Identities = 14/58 (24%), Positives = 32/58 (55%)
 Frame = +1

Query: 76  VKNKQYFKRYQVKFKRRREGKTDYYARKRLVVQDKNKYNTPKYRLIVRLSNKDVTCQV 249
           VKN  + +   ++ KR+ EGKT+   +K++  +D+ +   P  +    +SN + + ++
Sbjct: 79  VKNNGHSRAITLQNKRKPEGKTEKREKKKIKAEDETE---PSMKGKSNMSNTETSSEI 133


>At4g36540.1 68417.m05188 basic helix-loop-helix (bHLH) family
           protein contains Pfam domain, PF00010: Helix-loop-helix
           DNA-binding domain
          Length = 304

 Score = 28.3 bits (60), Expect = 2.4
 Identities = 14/58 (24%), Positives = 32/58 (55%)
 Frame = +1

Query: 76  VKNKQYFKRYQVKFKRRREGKTDYYARKRLVVQDKNKYNTPKYRLIVRLSNKDVTCQV 249
           VKN  + +   ++ KR+ EGKT+   +K++  +D+ +   P  +    +SN + + ++
Sbjct: 79  VKNNGHSRAITLQNKRKPEGKTEKREKKKIKAEDETE---PSMKGKSNMSNTETSSEI 133


>At2g24180.1 68415.m02889 cytochrome P450 family protein
          Length = 503

 Score = 27.1 bits (57), Expect = 5.5
 Identities = 13/37 (35%), Positives = 20/37 (54%)
 Frame = -2

Query: 372 QQQTSAVGSSIVSQTHIDTIAWEFMRVGSTDNVIALN 262
           Q Q + +GSS ++ THI  I  +    G   +VI L+
Sbjct: 281 QSQETKLGSSRITDTHIRAIIMDLFVAGVDTSVITLD 317


>At5g35753.1 68418.m04282 expressed protein
          Length = 592

 Score = 26.6 bits (56), Expect = 7.3
 Identities = 14/42 (33%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
 Frame = +1

Query: 124 RREGKTDYYARKRL-VVQDKNKYNTPKYRLIVRLSNKDVTCQ 246
           RR G+ DYY +KRL        Y   +Y  + +  NK ++C+
Sbjct: 79  RRSGEIDYYLQKRLDTFWTVCTYCKVQYEYLRKYVNKRLSCK 120


>At1g77300.1 68414.m09002 SET domain-containing protein similar to
            huntingtin interacting protein 1 [Homo sapiens]
            GI:12697196; contains Pfam profile PF00856: SET domain
          Length = 1759

 Score = 26.2 bits (55), Expect = 9.7
 Identities = 12/25 (48%), Positives = 16/25 (64%)
 Frame = +1

Query: 82   NKQYFKRYQVKFKRRREGKTDYYAR 156
            N+Q+ KR  VKF+R + GK  Y  R
Sbjct: 1017 NQQFQKRKYVKFERFQSGKKGYGLR 1041


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,548,080
Number of Sequences: 28952
Number of extensions: 181269
Number of successful extensions: 488
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 479
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 488
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 692941200
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)