Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_J03
         (457 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC794.07 |||dihydrolipoamide S-acetyltransferase E2 |Schizosac...    71   1e-13
SPBC947.06c |||spermidine family transporter |Schizosaccharomyce...    29   0.34 
SPBC23G7.04c |nif1||SEL1 repear protein Nif1|Schizosaccharomyces...    27   1.0  
SPCC417.07c |mto1|mbo1, mod20|MT organizer Mto1|Schizosaccharomy...    25   7.3  
SPAC806.08c |mod21||gamma tubulin complex subunit Mod21|Schizosa...    25   7.3  
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ...    24   9.6  
SPBC16D10.10 |||tRNA specific adenosine deaminase subunit Tad2 |...    24   9.6  
SPCC4G3.02 |aph1||bis|Schizosaccharomyces pombe|chr 3|||Manual         24   9.6  

>SPCC794.07 |||dihydrolipoamide S-acetyltransferase E2
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 483

 Score = 70.5 bits (165), Expect = 1e-13
 Identities = 45/147 (30%), Positives = 69/147 (46%), Gaps = 11/147 (7%)
 Frame = +1

Query: 46  DRIYASPFARRIAELKNFRLGG-QGTGLYGSLKSGDLSDXX----------XXXXXXXXX 192
           DR++ASP AR++AE K+  L   +G+G  G +   D+ +                     
Sbjct: 184 DRVFASPLARKLAEEKDLDLSQIRGSGPNGRIIKVDIENFKPVVAPKPSNEAAAKATTPA 243

Query: 193 XXXXXXXXXXTFVDLPLSGMRETIARRLTAAKQSIPHYQLVATVNVESTLAMRKLVNDKL 372
                      + DLPLS MR+ IA RL  +K   PHY +  +VN+E  + +R  +N   
Sbjct: 244 ASAADAAAPGDYEDLPLSNMRKIIASRLAESKNMNPHYYVTVSVNMEKIIRLRAALN--- 300

Query: 373 AAEKSDINVSVNDLIVNAVAATCKRVP 453
           A       +SVNDL++ A  A  ++VP
Sbjct: 301 AMADGRYKLSVNDLVIKATTAALRQVP 327


>SPBC947.06c |||spermidine family transporter |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 498

 Score = 29.1 bits (62), Expect = 0.34
 Identities = 10/19 (52%), Positives = 14/19 (73%)
 Frame = -3

Query: 134 DPYKPVPWPPSLKFFNSAI 78
           DP KP+ WP S+K  N+A+
Sbjct: 43  DPEKPLNWPVSIKLLNTAL 61


>SPBC23G7.04c |nif1||SEL1 repear protein Nif1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 681

 Score = 27.5 bits (58), Expect = 1.0
 Identities = 11/31 (35%), Positives = 18/31 (58%)
 Frame = +3

Query: 222 YVRGLAPERHAGDHRPSPHSRQAKHPALPAR 314
           Y   + P R A +  P+P+S ++ HPA P +
Sbjct: 182 YYHEIEPPRTASNTSPTPNSIKSAHPAEPPK 212


>SPCC417.07c |mto1|mbo1, mod20|MT organizer Mto1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1115

 Score = 24.6 bits (51), Expect = 7.3
 Identities = 10/30 (33%), Positives = 19/30 (63%)
 Frame = +1

Query: 340 LAMRKLVNDKLAAEKSDINVSVNDLIVNAV 429
           L +RK  ND+L  +  ++ V++N   +NA+
Sbjct: 448 LLLRKQENDRLVKQVEELTVALNSGKMNAI 477


>SPAC806.08c |mod21||gamma tubulin complex subunit
           Mod21|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 618

 Score = 24.6 bits (51), Expect = 7.3
 Identities = 10/29 (34%), Positives = 18/29 (62%)
 Frame = +1

Query: 229 VDLPLSGMRETIARRLTAAKQSIPHYQLV 315
           +++PL    E + R+  + KQSI H Q++
Sbjct: 9   LEMPLRNACEVLNRQTVSVKQSILHAQIL 37


>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1420

 Score = 24.2 bits (50), Expect = 9.6
 Identities = 13/36 (36%), Positives = 17/36 (47%)
 Frame = +3

Query: 213 SGRYVRGLAPERHAGDHRPSPHSRQAKHPALPARCH 320
           S +  +G +  R A  H  S H R +KH A P   H
Sbjct: 577 SSKSGQGSSLSRRASKHE-SKHKRDSKHEARPESKH 611


>SPBC16D10.10 |||tRNA specific adenosine deaminase subunit Tad2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 367

 Score = 24.2 bits (50), Expect = 9.6
 Identities = 10/41 (24%), Positives = 21/41 (51%)
 Frame = +1

Query: 295 IPHYQLVATVNVESTLAMRKLVNDKLAAEKSDINVSVNDLI 417
           +P+Y     V  ++   + + V  ++ AEK D+   +ND +
Sbjct: 113 LPYYTSKIFVYEDADTRLERCVLQRVKAEKGDLTKVLNDFV 153


>SPCC4G3.02 |aph1||bis|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 182

 Score = 24.2 bits (50), Expect = 9.6
 Identities = 10/16 (62%), Positives = 11/16 (68%)
 Frame = +3

Query: 243 ERHAGDHRPSPHSRQA 290
           ER+AGD RP    RQA
Sbjct: 134 ERYAGDERPPTSMRQA 149


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.317    0.132    0.359 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,412,550
Number of Sequences: 5004
Number of extensions: 22528
Number of successful extensions: 73
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 71
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 72
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 170285640
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)