Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_J03
         (457 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_16687| Best HMM Match : No HMM Matches (HMM E-Value=.)              72   2e-13
SB_10000| Best HMM Match : 2-oxoacid_dh (HMM E-Value=0)                48   3e-06
SB_12028| Best HMM Match : DAG1 (HMM E-Value=0.22)                     29   2.4  
SB_56407| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.4  
SB_14652| Best HMM Match : E-MAP-115 (HMM E-Value=4.6)                 28   3.2  
SB_27694| Best HMM Match : CPSase_L_D3 (HMM E-Value=8)                 28   3.2  
SB_36875| Best HMM Match : TP2 (HMM E-Value=2.9)                       27   5.6  
SB_51071| Best HMM Match : SNF7 (HMM E-Value=0.16)                     27   5.6  
SB_59432| Best HMM Match : MORN (HMM E-Value=9.3e-26)                  27   7.4  
SB_53604| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.4  
SB_48387| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.7  

>SB_16687| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 407

 Score = 72.1 bits (169), Expect = 2e-13
 Identities = 40/134 (29%), Positives = 65/134 (48%), Gaps = 4/134 (2%)
 Frame = +1

Query: 64  PFARRIAELKNFRL----GGQGTGLYGSLKSGDLSDXXXXXXXXXXXXXXXXXXXXXTFV 231
           P    + + KNF +    G  G+G  G + + D+                        + 
Sbjct: 146 PNKEDVDKFKNFTVDDAEGIPGSGPGGRITAADVQTAASAALAAQPTPVAAAPIPGTVYE 205

Query: 232 DLPLSGMRETIARRLTAAKQSIPHYQLVATVNVESTLAMRKLVNDKLAAEKSDINVSVND 411
           D+PLS MR+ IA+RL  +KQ+IPHY L   V ++  + +RK +N++    K    +S+ND
Sbjct: 206 DIPLSNMRQVIAKRLLQSKQTIPHYYLSVDVKMDQLIEIRKQLNEQ---GKGSYKLSIND 262

Query: 412 LIVNAVAATCKRVP 453
            IV + A  C++VP
Sbjct: 263 FIVKSCALACRQVP 276


>SB_10000| Best HMM Match : 2-oxoacid_dh (HMM E-Value=0)
          Length = 382

 Score = 48.4 bits (110), Expect = 3e-06
 Identities = 28/77 (36%), Positives = 41/77 (53%)
 Frame = +1

Query: 223 TFVDLPLSGMRETIARRLTAAKQSIPHYQLVATVNVESTLAMRKLVNDKLAAEKSDINVS 402
           TF D+P + MR  IA+RL  +K +IPH      V   +   M  L+  K   ++  + VS
Sbjct: 162 TFTDVPNTEMRREIAKRLLKSKTTIPH------VYASTDCVMDNLLQLKSHLKERGVTVS 215

Query: 403 VNDLIVNAVAATCKRVP 453
           VNDL+V   A   ++VP
Sbjct: 216 VNDLLVKVAAVCLRKVP 232


>SB_12028| Best HMM Match : DAG1 (HMM E-Value=0.22)
          Length = 1249

 Score = 28.7 bits (61), Expect = 2.4
 Identities = 15/54 (27%), Positives = 26/54 (48%)
 Frame = +1

Query: 241 LSGMRETIARRLTAAKQSIPHYQLVATVNVESTLAMRKLVNDKLAAEKSDINVS 402
           LSG   T++R +     S+      +T++ ES +    LVND      S ++V+
Sbjct: 236 LSGPGSTLSRTVVLTLSSVTQAITYSTISTESFVTPTSLVNDSTIFASSPVDVT 289


>SB_56407| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2028

 Score = 28.7 bits (61), Expect = 2.4
 Identities = 14/38 (36%), Positives = 22/38 (57%)
 Frame = +3

Query: 234  LAPERHAGDHRPSPHSRQAKHPALPARCHC*RRVHLGY 347
            LAP++   ++  +PHS   K   +PA  HC + + LGY
Sbjct: 1630 LAPQQLLAENHSTPHSIPLKWQPIPA--HCVQGILLGY 1665


>SB_14652| Best HMM Match : E-MAP-115 (HMM E-Value=4.6)
          Length = 192

 Score = 28.3 bits (60), Expect = 3.2
 Identities = 24/78 (30%), Positives = 34/78 (43%)
 Frame = +3

Query: 48  QDLRESFRSQNR*IEKF*TRRPGYRFIRITEER*PIRCSAGRVWRWGVAAGTGTGSGRYV 227
           Q LRE +   N  + +F + + G   I++       RC A      G+ AG G      V
Sbjct: 40  QSLREKYPDLNENLIRFQSDQRGKTLIQLRNLGKGGRCKAE-----GLQAGDG------V 88

Query: 228 RGLAPERHAGDHRPSPHS 281
           RG     H G+HR SP +
Sbjct: 89  RGKGRRGHPGEHRTSPRA 106


>SB_27694| Best HMM Match : CPSase_L_D3 (HMM E-Value=8)
          Length = 396

 Score = 28.3 bits (60), Expect = 3.2
 Identities = 17/36 (47%), Positives = 22/36 (61%), Gaps = 6/36 (16%)
 Frame = -2

Query: 372 ELVVDQLPHSQG---GL---DVNSGNELVVRDALLG 283
           ELV DQ PH +G   GL   DVN G E + ++ L+G
Sbjct: 167 ELVRDQFPHLEGLLEGLWFSDVNRGEERLEKEVLVG 202


>SB_36875| Best HMM Match : TP2 (HMM E-Value=2.9)
          Length = 234

 Score = 27.5 bits (58), Expect = 5.6
 Identities = 10/33 (30%), Positives = 17/33 (51%)
 Frame = +3

Query: 225 VRGLAPERHAGDHRPSPHSRQAKHPALPARCHC 323
           +R L+P RH+   +P   + + K P  P   +C
Sbjct: 70  IRDLSPSRHSPSPKPDRKAHKNKSPKSPVTINC 102


>SB_51071| Best HMM Match : SNF7 (HMM E-Value=0.16)
          Length = 417

 Score = 27.5 bits (58), Expect = 5.6
 Identities = 14/58 (24%), Positives = 25/58 (43%)
 Frame = -2

Query: 402 RNVDVGFLSGELVVDQLPHSQGGLDVNSGNELVVRDALLGGCEATGDGLPHAAQGQVH 229
           R  D+G L G  +VDQL H    ++  + N++  + +   GC +      +      H
Sbjct: 254 RTADLGQLRG--IVDQLSHQVANMERETSNQVHRQHSSATGCSSNSTSRKNGKSSATH 309


>SB_59432| Best HMM Match : MORN (HMM E-Value=9.3e-26)
          Length = 1362

 Score = 27.1 bits (57), Expect = 7.4
 Identities = 10/18 (55%), Positives = 11/18 (61%)
 Frame = +3

Query: 162 SAGRVWRWGVAAGTGTGS 215
           S G VW WG+   TG GS
Sbjct: 183 SRGTVWAWGLGCQTGHGS 200


>SB_53604| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 655

 Score = 27.1 bits (57), Expect = 7.4
 Identities = 18/53 (33%), Positives = 26/53 (49%), Gaps = 1/53 (1%)
 Frame = +3

Query: 249 HAGDHRPSPHSRQAKHPALPARCHC*RRVHLGYEEAGQRQ-ARR*EIRHQRFC 404
           H+G    + H+    H  + A+ H  R  H G  +  + Q AR  EI+H RFC
Sbjct: 206 HSGTQSCTHHA----HTQVHAKAHA-RSTHAGTRKRTRTQYARTTEIKHVRFC 253


>SB_48387| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 941

 Score = 26.6 bits (56), Expect = 9.7
 Identities = 13/52 (25%), Positives = 28/52 (53%)
 Frame = +1

Query: 262 IARRLTAAKQSIPHYQLVATVNVESTLAMRKLVNDKLAAEKSDINVSVNDLI 417
           I   L A ++++ + + +   N++S  A      DK+ AEK D+  S+ +++
Sbjct: 149 IEYELMAERKAMENARNIFKANIDSLNASHSKELDKIEAEKEDVRKSMLEML 200


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.317    0.132    0.359 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,519,476
Number of Sequences: 59808
Number of extensions: 202190
Number of successful extensions: 568
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 517
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 566
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 920703675
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)