Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_J02
         (420 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3H5.07 |rpl702|rpl7-2, rpl7, rpl7b|60S ribosomal protein L7|...    87   8e-19
SPBC18H10.12c |rpl701||60S ribosomal protein L7|Schizosaccharomy...    85   3e-18
SPAC664.06 |rpl703|rpl7|60S ribosomal protein L7|Schizosaccharom...    79   3e-16
SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase Mok11|S...    27   0.90 
SPCC70.05c |||serine/threonine protein kinase |Schizosaccharomyc...    26   2.7  
SPCC24B10.09 |rps1702|rps17-2, rps17|40S ribosomal protein S17|S...    25   3.6  
SPAC1834.11c |sec18||secretory pathway protein Sec18 |Schizosacc...    25   4.8  
SPCC74.02c |||mRNA cleavage and polyadenylation specificity fact...    24   8.4  

>SPAC3H5.07 |rpl702|rpl7-2, rpl7, rpl7b|60S ribosomal protein
           L7|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 250

 Score = 87.4 bits (207), Expect = 8e-19
 Identities = 46/108 (42%), Positives = 64/108 (59%), Gaps = 5/108 (4%)
 Frame = +2

Query: 110 SNTLPTV-----PESVXXXXXXXXXXXXXXXQITLKRRSASIKKRKEIFQRAEQYVKEYR 274
           S+T+P+V     PES+                   +++SA  KKR+ I +RAE Y  EYR
Sbjct: 4   SSTVPSVASIFAPESLLKKTKAQKQSREQIVAAAAEKKSARQKKRELIAKRAEAYEAEYR 63

Query: 275 IEERDEIRLARQARNRGNYYVPGEAKLAFVIRIRGVNQVSAKVRTVLQ 418
             ER++I LAR+AR  GNY+VP E KL FV+RIRG+N +  K R ++Q
Sbjct: 64  AAEREQIELARKARAEGNYFVPHEPKLIFVVRIRGINNIPPKARKIMQ 111


>SPBC18H10.12c |rpl701||60S ribosomal protein L7|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 251

 Score = 85.4 bits (202), Expect = 3e-18
 Identities = 42/96 (43%), Positives = 56/96 (58%)
 Frame = +2

Query: 131 PESVXXXXXXXXXXXXXXXQITLKRRSASIKKRKEIFQRAEQYVKEYRIEERDEIRLARQ 310
           PES+                   ++++A  KKR+ I +RAE Y  EYR  ER++I L R+
Sbjct: 17  PESLLKKKKTQEQSREQRVAAAAEKKAAQQKKRELIAKRAESYDAEYRKAEREQIELGRK 76

Query: 311 ARNRGNYYVPGEAKLAFVIRIRGVNQVSAKVRTVLQ 418
           AR  GNYYVP E KL FVIRIRG+N +  K R ++Q
Sbjct: 77  ARAEGNYYVPDETKLVFVIRIRGINNIPPKARKIMQ 112


>SPAC664.06 |rpl703|rpl7|60S ribosomal protein
           L7|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 249

 Score = 79.0 bits (186), Expect = 3e-16
 Identities = 36/74 (48%), Positives = 50/74 (67%)
 Frame = +2

Query: 197 LKRRSASIKKRKEIFQRAEQYVKEYRIEERDEIRLARQARNRGNYYVPGEAKLAFVIRIR 376
           + ++ A  K RKE F+RAE ++  YR  ER+ IRL R A+N+G+ +VP E KL FVIRI 
Sbjct: 37  IAKKEAQKKNRKETFKRAETFINNYRQRERERIRLNRSAKNKGDIFVPDETKLLFVIRIA 96

Query: 377 GVNQVSAKVRTVLQ 418
           GV  +  K+R VL+
Sbjct: 97  GVKNMPPKIRKVLR 110


>SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase
           Mok11|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2397

 Score = 27.5 bits (58), Expect = 0.90
 Identities = 9/34 (26%), Positives = 19/34 (55%)
 Frame = +2

Query: 245 RAEQYVKEYRIEERDEIRLARQARNRGNYYVPGE 346
           +A Q   ++ ++    +RL     N+ N+++PGE
Sbjct: 309 KATQMTVDFLVDWAKSVRLCANRFNKSNFFIPGE 342


>SPCC70.05c |||serine/threonine protein kinase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 781

 Score = 25.8 bits (54), Expect = 2.7
 Identities = 14/45 (31%), Positives = 24/45 (53%)
 Frame = +3

Query: 171 SELAVFRSHSRGVPLPLRRGKKSFREPNNMSKNTASRSVMKSDWQ 305
           SE    RS   G P P+R+G   F+  + +S+  +S+    SD++
Sbjct: 20  SESPSSRSIGSGTPAPVRKGLSKFKN-SFLSRKNSSQIKSPSDYK 63


>SPCC24B10.09 |rps1702|rps17-2, rps17|40S ribosomal protein
           S17|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 132

 Score = 25.4 bits (53), Expect = 3.6
 Identities = 12/38 (31%), Positives = 22/38 (57%)
 Frame = +2

Query: 206 RSASIKKRKEIFQRAEQYVKEYRIEERDEIRLARQARN 319
           R  S K ++E  +R +QYV E    E+D+I + +  ++
Sbjct: 67  RGISFKLQEEERERKDQYVPEVSELEKDKINVDQDTKD 104


>SPAC1834.11c |sec18||secretory pathway protein Sec18
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 792

 Score = 25.0 bits (52), Expect = 4.8
 Identities = 10/20 (50%), Positives = 14/20 (70%)
 Frame = -2

Query: 131 EQLATCYCPIYRSQVFSRPQ 72
           E++A  +C  Y+SQVFS  Q
Sbjct: 167 EEMAKLFCSSYQSQVFSPGQ 186


>SPCC74.02c |||mRNA cleavage and polyadenylation specificity factor
           complex associated protein|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 710

 Score = 24.2 bits (50), Expect = 8.4
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = -3

Query: 214 SGTPLECDLKTASSECLPPFTVLQ 143
           S  PLE DL+   +ECL P  ++Q
Sbjct: 187 SSDPLE-DLRLTLTECLNPINIVQ 209


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,691,223
Number of Sequences: 5004
Number of extensions: 31399
Number of successful extensions: 75
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 74
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 75
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 148351622
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)