Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_J02
         (420 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_1075 + 30634141-30634320,30634917-30635014,30635113-306351...    82   2e-16
08_01_0835 + 8147177-8147359,8147871-8147968,8148045-8148102,814...    81   3e-16
02_05_0756 - 31534011-31534141,31534235-31535338,31535448-315356...    31   0.28 
11_01_0049 - 375049-375342,375596-375660,375907-375956,376492-37...    28   3.5  
10_08_0139 + 15145310-15145622,15145820-15145881,15145975-151463...    28   3.5  
09_01_0043 + 790859-790873,791410-791603,792521-792605,792719-79...    27   6.1  

>04_04_1075 +
           30634141-30634320,30634917-30635014,30635113-30635170,
           30635259-30635338,30635686-30635788,30635847-30636080
          Length = 250

 Score = 81.8 bits (193), Expect = 2e-16
 Identities = 39/97 (40%), Positives = 57/97 (58%)
 Frame = +2

Query: 128 VPESVXXXXXXXXXXXXXXXQITLKRRSASIKKRKEIFQRAEQYVKEYRIEERDEIRLAR 307
           VPESV               +  +  +  SI+ RK IF RA+QY +EY  +E++ ++L R
Sbjct: 10  VPESVLRKRKREEVWAAASKEKAVAEKKKSIESRKLIFSRAKQYAEEYEAQEKELVQLKR 69

Query: 308 QARNRGNYYVPGEAKLAFVIRIRGVNQVSAKVRTVLQ 418
           +AR +G +YV  E KL FV+RIRG+N +  K R +LQ
Sbjct: 70  EARMKGGFYVSPEEKLLFVVRIRGINAMHPKTRKILQ 106


>08_01_0835 +
           8147177-8147359,8147871-8147968,8148045-8148102,
           8148192-8148271,8148770-8148872,8148966-8149181
          Length = 245

 Score = 81.4 bits (192), Expect = 3e-16
 Identities = 39/97 (40%), Positives = 58/97 (59%)
 Frame = +2

Query: 128 VPESVXXXXXXXXXXXXXXXQITLKRRSASIKKRKEIFQRAEQYVKEYRIEERDEIRLAR 307
           VPESV               +  L  +  +++ RK IF RA+QY +EY  +E++ ++L R
Sbjct: 11  VPESVLKKRKREEQWAADRKEKALAEKKKAVESRKLIFARAKQYAQEYDAQEKELVQLKR 70

Query: 308 QARNRGNYYVPGEAKLAFVIRIRGVNQVSAKVRTVLQ 418
           +AR +G +YV  EAKL FV+RIRG+N +  K R +LQ
Sbjct: 71  EARMKGGFYVSPEAKLLFVVRIRGINAMHPKTRKILQ 107


>02_05_0756 -
           31534011-31534141,31534235-31535338,31535448-31535692,
           31535789-31535940,31536051-31536158
          Length = 579

 Score = 31.5 bits (68), Expect = 0.28
 Identities = 17/52 (32%), Positives = 28/52 (53%)
 Frame = -3

Query: 382 DTTNTDDKC*FSFTGHIIIATVTSLSCQSDFITLLDAVFFDILFGSLKDFFP 227
           D TN  +KC     G+   A++ ++S QS  I +LDA ++    G  ++ FP
Sbjct: 382 DPTNMAEKCKEGPQGNRFAASLNNVSFQSPAIDVLDAYYYSSGHGVYEEDFP 433


>11_01_0049 -
           375049-375342,375596-375660,375907-375956,376492-376541
          Length = 152

 Score = 27.9 bits (59), Expect = 3.5
 Identities = 14/35 (40%), Positives = 19/35 (54%)
 Frame = +3

Query: 222 RRGKKSFREPNNMSKNTASRSVMKSDWQDRLVTVA 326
           R+G KS   P N  K+   R +M S+ +  L TVA
Sbjct: 108 RKGTKSIDHPCNTIKSMGDRGLMSSESRRMLYTVA 142


>10_08_0139 +
           15145310-15145622,15145820-15145881,15145975-15146355,
           15146413-15146929,15147031-15147161
          Length = 467

 Score = 27.9 bits (59), Expect = 3.5
 Identities = 16/52 (30%), Positives = 28/52 (53%)
 Frame = -3

Query: 382 DTTNTDDKC*FSFTGHIIIATVTSLSCQSDFITLLDAVFFDILFGSLKDFFP 227
           DTTN  +K      G+   A++ ++S +S  I +LDA ++    G  ++ FP
Sbjct: 269 DTTNATNKLCKGPQGNQFAASLNNVSFESPAIDVLDAYYYGSGRGVYEEDFP 320


>09_01_0043 +
           790859-790873,791410-791603,792521-792605,792719-793075
          Length = 216

 Score = 27.1 bits (57), Expect = 6.1
 Identities = 14/32 (43%), Positives = 17/32 (53%)
 Frame = -2

Query: 164 PSFYGASRLIREQLATCYCPIYRSQVFSRPQP 69
           P    A  L R Q+  C+CP+ RS  F RP P
Sbjct: 30  PCMQPAICLPRTQVI-CHCPVGRSLSFPRPMP 60


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,516,186
Number of Sequences: 37544
Number of extensions: 226670
Number of successful extensions: 524
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 516
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 524
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 766563072
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)