Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_J02
         (420 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_58517| Best HMM Match : Ribosomal_L30_N (HMM E-Value=1.5e-32)      101   2e-22
SB_10794| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.1  
SB_8804| Best HMM Match : RGS (HMM E-Value=1.5e-37)                    27   4.8  
SB_13893| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   4.8  
SB_58727| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   6.3  
SB_29786| Best HMM Match : I-set (HMM E-Value=0)                       27   8.3  

>SB_58517| Best HMM Match : Ribosomal_L30_N (HMM E-Value=1.5e-32)
          Length = 245

 Score =  101 bits (243), Expect = 2e-22
 Identities = 50/104 (48%), Positives = 67/104 (64%)
 Frame = +2

Query: 107 DSNTLPTVPESVXXXXXXXXXXXXXXXQITLKRRSASIKKRKEIFQRAEQYVKEYRIEER 286
           D   +P VPE++               +  L ++     KRKEIF+RAE+YVKEYR +E 
Sbjct: 4   DRVKVPRVPETLLKKRKSLEQIKAARAKAQLAQKKLQHGKRKEIFKRAEKYVKEYRQKEV 63

Query: 287 DEIRLARQARNRGNYYVPGEAKLAFVIRIRGVNQVSAKVRTVLQ 418
           DE+R+ + A+  GN+YVP EA+LAFVIRIRG+N VS KVR +LQ
Sbjct: 64  DELRMKKMAKKHGNFYVPPEARLAFVIRIRGINGVSPKVRKILQ 107


>SB_10794| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 477

 Score = 28.7 bits (61), Expect = 2.1
 Identities = 19/55 (34%), Positives = 26/55 (47%)
 Frame = -3

Query: 244 LKDFFPLLNGSGTPLECDLKTASSECLPPFTVLQD*FGNSWQRVTVLFTVHKFFL 80
           LK+   L++G G P++C L+ A S   P F    D +G  W  V       K FL
Sbjct: 426 LKEQMSLVSGGGGPIQCPLRRAPS---PGF---DDCYGRHWDAVGSRRYERKLFL 474


>SB_8804| Best HMM Match : RGS (HMM E-Value=1.5e-37)
          Length = 712

 Score = 27.5 bits (58), Expect = 4.8
 Identities = 13/31 (41%), Positives = 20/31 (64%)
 Frame = +2

Query: 248 AEQYVKEYRIEERDEIRLARQARNRGNYYVP 340
           +E+Y    +I  RD   +AR+ R+RG YY+P
Sbjct: 475 SEKYRSSGKI--RDTSSIARETRSRGPYYLP 503


>SB_13893| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 77

 Score = 27.5 bits (58), Expect = 4.8
 Identities = 13/42 (30%), Positives = 20/42 (47%)
 Frame = +2

Query: 206 RSASIKKRKEIFQRAEQYVKEYRIEERDEIRLARQARNRGNY 331
           R   + +R+EI++R E Y +      R+  RL    R R  Y
Sbjct: 27  RRREMYRRREIYRRREMYRRREMYRRREMYRLREMYRRREMY 68


>SB_58727| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 190

 Score = 27.1 bits (57), Expect = 6.3
 Identities = 15/31 (48%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
 Frame = -3

Query: 325 ATVTSLSCQSDF-ITLLDAVFFDILFGSLKD 236
           ATV+  S +  F  T L  V+FD  F SLKD
Sbjct: 6   ATVSGRSMRLSFGATALSGVWFDFYFSSLKD 36


>SB_29786| Best HMM Match : I-set (HMM E-Value=0)
          Length = 6300

 Score = 26.6 bits (56), Expect = 8.3
 Identities = 12/45 (26%), Positives = 23/45 (51%)
 Frame = +2

Query: 221  KKRKEIFQRAEQYVKEYRIEERDEIRLARQARNRGNYYVPGEAKL 355
            KK KE+  +  Q   ++ + + D  RLA + R R    +P + ++
Sbjct: 967  KKAKELVSKQRQISTKFELMDNDLYRLAEKLRERKRLGLPEQEEV 1011


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,343,748
Number of Sequences: 59808
Number of extensions: 261040
Number of successful extensions: 713
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 676
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 712
length of database: 16,821,457
effective HSP length: 75
effective length of database: 12,335,857
effective search space used: 789494848
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)