Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0001_J02
(420 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF003139-2|AAB54165.1| 244|Caenorhabditis elegans Ribosomal pro... 83 8e-17
AF016672-5|AAB66120.1| 951|Caenorhabditis elegans Hypothetical ... 31 0.44
AL034393-11|CAA22324.2| 2417|Caenorhabditis elegans Hypothetical... 29 1.4
AJ250261-1|CAB59919.1| 2417|Caenorhabditis elegans hypothetical ... 29 1.4
AF016672-4|AAD47126.1| 968|Caenorhabditis elegans Hypothetical ... 29 1.8
Z32683-1|CAA83621.1| 812|Caenorhabditis elegans Hypothetical pr... 28 3.1
U41993-3|AAA83445.1| 384|Caenorhabditis elegans Nuclear hormone... 28 3.1
Z81533-12|CAB04333.2| 356|Caenorhabditis elegans Hypothetical p... 27 4.1
U21854-1|AAA87454.1| 310|Caenorhabditis elegans cCAF1 protein p... 27 5.5
AY305835-1|AAR11980.1| 618|Caenorhabditis elegans nuclear recep... 27 5.5
AL132860-28|CAB60501.1| 310|Caenorhabditis elegans Hypothetical... 27 5.5
AF273820-1|AAG15169.1| 624|Caenorhabditis elegans nuclear recep... 27 5.5
AF273819-1|AAG15168.1| 619|Caenorhabditis elegans nuclear recep... 27 5.5
AF047660-8|AAM54167.1| 526|Caenorhabditis elegans Nuclear hormo... 27 5.5
AF047660-7|AAM54166.1| 577|Caenorhabditis elegans Nuclear hormo... 27 5.5
AF047660-6|AAV34786.1| 659|Caenorhabditis elegans Nuclear hormo... 27 5.5
AF047660-5|AAM54168.1| 733|Caenorhabditis elegans Nuclear hormo... 27 5.5
AC006631-2|AAL02500.1| 142|Caenorhabditis elegans Hypothetical ... 27 5.5
Z81519-2|CAB04217.1| 468|Caenorhabditis elegans Hypothetical pr... 27 7.2
>AF003139-2|AAB54165.1| 244|Caenorhabditis elegans Ribosomal
protein, large subunitprotein 7 protein.
Length = 244
Score = 83.0 bits (196), Expect = 8e-17
Identities = 39/100 (39%), Positives = 62/100 (62%)
Frame = +2
Query: 119 LPTVPESVXXXXXXXXXXXXXXXQITLKRRSASIKKRKEIFQRAEQYVKEYRIEERDEIR 298
+P VPE+V Q + + + +K+ + F+RAE+YV+EYR +++ +R
Sbjct: 7 VPQVPETVLKRRKQRADARTKAAQHKVTVAAKNKEKKTQYFKRAEKYVQEYRNAQKEGLR 66
Query: 299 LARQARNRGNYYVPGEAKLAFVIRIRGVNQVSAKVRTVLQ 418
L R+A +G++YVP E K+AFV+RIRG+NQ+ K R LQ
Sbjct: 67 LKREAEAKGDFYVPAEHKVAFVVRIRGINQLHPKPRKALQ 106
>AF016672-5|AAB66120.1| 951|Caenorhabditis elegans Hypothetical
protein F56D12.6b protein.
Length = 951
Score = 30.7 bits (66), Expect = 0.44
Identities = 16/76 (21%), Positives = 40/76 (52%), Gaps = 1/76 (1%)
Frame = +2
Query: 191 ITLKRRSASIKKRKEIFQRAEQYVKEYRIEERDEIRLARQARNRGNYYVPGEAKL-AFVI 367
++LK ++KK +E Q+VKE E + ++ ++ N+ ++Y+ + + A +
Sbjct: 1 MSLKVLQENLKKSEETVAEVAQFVKERLSVEDEYVKAINRSVNKVSHYIQNGSSIDAMWL 60
Query: 368 RIRGVNQVSAKVRTVL 415
+G ++ A++ +L
Sbjct: 61 LTKGTMELMAEIHVML 76
>AL034393-11|CAA22324.2| 2417|Caenorhabditis elegans Hypothetical
protein Y18D10A.13 protein.
Length = 2417
Score = 29.1 bits (62), Expect = 1.4
Identities = 13/48 (27%), Positives = 25/48 (52%)
Frame = +3
Query: 168 HSELAVFRSHSRGVPLPLRRGKKSFREPNNMSKNTASRSVMKSDWQDR 311
H L F SH+ + ++RG +F + N+ + + +SVM + +R
Sbjct: 1427 HRSLLTFTSHAIRLECDIKRGFATFSDANSSHRFSIIQSVMNQSFNNR 1474
>AJ250261-1|CAB59919.1| 2417|Caenorhabditis elegans hypothetical
protein protein.
Length = 2417
Score = 29.1 bits (62), Expect = 1.4
Identities = 13/48 (27%), Positives = 25/48 (52%)
Frame = +3
Query: 168 HSELAVFRSHSRGVPLPLRRGKKSFREPNNMSKNTASRSVMKSDWQDR 311
H L F SH+ + ++RG +F + N+ + + +SVM + +R
Sbjct: 1427 HRSLLTFTSHAIRLECDIKRGFATFSDANSSHRFSIIQSVMNQSFNNR 1474
>AF016672-4|AAD47126.1| 968|Caenorhabditis elegans Hypothetical
protein F56D12.6a protein.
Length = 968
Score = 28.7 bits (61), Expect = 1.8
Identities = 14/68 (20%), Positives = 36/68 (52%), Gaps = 1/68 (1%)
Frame = +2
Query: 215 SIKKRKEIFQRAEQYVKEYRIEERDEIRLARQARNRGNYYVPGEAKL-AFVIRIRGVNQV 391
++KK +E Q+VKE E + ++ ++ N+ ++Y+ + + A + +G ++
Sbjct: 26 NLKKSEETVAEVAQFVKERLSVEDEYVKAINRSVNKVSHYIQNGSSIDAMWLLTKGTMEL 85
Query: 392 SAKVRTVL 415
A++ +L
Sbjct: 86 MAEIHVML 93
>Z32683-1|CAA83621.1| 812|Caenorhabditis elegans Hypothetical
protein R07E5.1 protein.
Length = 812
Score = 27.9 bits (59), Expect = 3.1
Identities = 16/47 (34%), Positives = 29/47 (61%), Gaps = 6/47 (12%)
Frame = +2
Query: 188 QITLKRRSASIKKRKEIFQRAEQ-----YVKEYR-IEERDEIRLARQ 310
Q LK+R +K+R+EI ++ E+ KE + +E RD +R+++Q
Sbjct: 673 QEILKKREEDLKRRREIVEKKEEENRKRVEKELKELENRDLLRVSKQ 719
>U41993-3|AAA83445.1| 384|Caenorhabditis elegans Nuclear hormone
receptor familyprotein 39 protein.
Length = 384
Score = 27.9 bits (59), Expect = 3.1
Identities = 15/46 (32%), Positives = 25/46 (54%)
Frame = -1
Query: 420 SCNTVRTLADTWLTPRIRMTNASLASPGT**LPRLRACLANLISSR 283
+C + +ADTW++ M ++SLA+ G LP + +L S R
Sbjct: 334 NCQFKKLIADTWMSTLKNMNDSSLATRG---LPFAAPAIHDLTSGR 376
>Z81533-12|CAB04333.2| 356|Caenorhabditis elegans Hypothetical
protein F36G9.1 protein.
Length = 356
Score = 27.5 bits (58), Expect = 4.1
Identities = 20/64 (31%), Positives = 32/64 (50%), Gaps = 1/64 (1%)
Frame = -3
Query: 295 DFITL-LDAVFFDILFGSLKDFFPLLNGSGTPLECDLKTASSECLPPFTVLQD*FGNSWQ 119
DF++L FF ILFG+ +F L+NG+ L C + + +++ FG
Sbjct: 295 DFLSLGYRLAFFIILFGAFCEFVSLINGTLHFLLCAFISTQYQ-----KTVREMFGRKIS 349
Query: 118 RVTV 107
R+TV
Sbjct: 350 RITV 353
>U21854-1|AAA87454.1| 310|Caenorhabditis elegans cCAF1 protein
protein.
Length = 310
Score = 27.1 bits (57), Expect = 5.5
Identities = 11/30 (36%), Positives = 17/30 (56%)
Frame = -3
Query: 157 FTVLQD*FGNSWQRVTVLFTVHKFFLGRSL 68
F + + FG++W ++ L H F LG SL
Sbjct: 254 FKIKKQFFGDNWNQIAPLICGHMFGLGSSL 283
>AY305835-1|AAR11980.1| 618|Caenorhabditis elegans nuclear receptor
NHR-66 protein.
Length = 618
Score = 27.1 bits (57), Expect = 5.5
Identities = 18/63 (28%), Positives = 29/63 (46%)
Frame = -3
Query: 253 FGSLKDFFPLLNGSGTPLECDLKTASSECLPPFTVLQD*FGNSWQRVTVLFTVHKFFLGR 74
F ++ +F NG+ L+ D +T ++ LP FT D G ++ + T LG
Sbjct: 427 FNNIAKYFE--NGALKDLKLDYETTTNLFLPSFTHAMDTIGEKMKKNNITETELTILLGL 484
Query: 73 SLL 65
LL
Sbjct: 485 VLL 487
>AL132860-28|CAB60501.1| 310|Caenorhabditis elegans Hypothetical
protein Y56A3A.20 protein.
Length = 310
Score = 27.1 bits (57), Expect = 5.5
Identities = 11/30 (36%), Positives = 17/30 (56%)
Frame = -3
Query: 157 FTVLQD*FGNSWQRVTVLFTVHKFFLGRSL 68
F + + FG++W ++ L H F LG SL
Sbjct: 254 FKIKKQFFGDNWNQIAPLICGHMFGLGSSL 283
>AF273820-1|AAG15169.1| 624|Caenorhabditis elegans nuclear receptor
NHR-66 protein.
Length = 624
Score = 27.1 bits (57), Expect = 5.5
Identities = 18/63 (28%), Positives = 29/63 (46%)
Frame = -3
Query: 253 FGSLKDFFPLLNGSGTPLECDLKTASSECLPPFTVLQD*FGNSWQRVTVLFTVHKFFLGR 74
F ++ +F NG+ L+ D +T ++ LP FT D G ++ + T LG
Sbjct: 431 FNNIAKYFE--NGALKDLKLDYETTTNLFLPSFTHAMDTIGEKMKKNNITETELTILLGL 488
Query: 73 SLL 65
LL
Sbjct: 489 VLL 491
>AF273819-1|AAG15168.1| 619|Caenorhabditis elegans nuclear receptor
NHR-66 protein.
Length = 619
Score = 27.1 bits (57), Expect = 5.5
Identities = 18/63 (28%), Positives = 29/63 (46%)
Frame = -3
Query: 253 FGSLKDFFPLLNGSGTPLECDLKTASSECLPPFTVLQD*FGNSWQRVTVLFTVHKFFLGR 74
F ++ +F NG+ L+ D +T ++ LP FT D G ++ + T LG
Sbjct: 426 FNNIAKYFE--NGALKDLKLDYETTTNLFLPSFTHAMDTIGEKMKKNNITETELTILLGL 483
Query: 73 SLL 65
LL
Sbjct: 484 VLL 486
>AF047660-8|AAM54167.1| 526|Caenorhabditis elegans Nuclear hormone
receptor familyprotein 66, isoform b protein.
Length = 526
Score = 27.1 bits (57), Expect = 5.5
Identities = 18/63 (28%), Positives = 29/63 (46%)
Frame = -3
Query: 253 FGSLKDFFPLLNGSGTPLECDLKTASSECLPPFTVLQD*FGNSWQRVTVLFTVHKFFLGR 74
F ++ +F NG+ L+ D +T ++ LP FT D G ++ + T LG
Sbjct: 333 FNNIAKYFE--NGALKDLKLDYETTTNLFLPSFTHAMDTIGEKMKKNNITETELTILLGL 390
Query: 73 SLL 65
LL
Sbjct: 391 VLL 393
>AF047660-7|AAM54166.1| 577|Caenorhabditis elegans Nuclear hormone
receptor familyprotein 66, isoform a protein.
Length = 577
Score = 27.1 bits (57), Expect = 5.5
Identities = 18/63 (28%), Positives = 29/63 (46%)
Frame = -3
Query: 253 FGSLKDFFPLLNGSGTPLECDLKTASSECLPPFTVLQD*FGNSWQRVTVLFTVHKFFLGR 74
F ++ +F NG+ L+ D +T ++ LP FT D G ++ + T LG
Sbjct: 384 FNNIAKYFE--NGALKDLKLDYETTTNLFLPSFTHAMDTIGEKMKKNNITETELTILLGL 441
Query: 73 SLL 65
LL
Sbjct: 442 VLL 444
>AF047660-6|AAV34786.1| 659|Caenorhabditis elegans Nuclear hormone
receptor familyprotein 66, isoform d protein.
Length = 659
Score = 27.1 bits (57), Expect = 5.5
Identities = 18/63 (28%), Positives = 29/63 (46%)
Frame = -3
Query: 253 FGSLKDFFPLLNGSGTPLECDLKTASSECLPPFTVLQD*FGNSWQRVTVLFTVHKFFLGR 74
F ++ +F NG+ L+ D +T ++ LP FT D G ++ + T LG
Sbjct: 466 FNNIAKYFE--NGALKDLKLDYETTTNLFLPSFTHAMDTIGEKMKKNNITETELTILLGL 523
Query: 73 SLL 65
LL
Sbjct: 524 VLL 526
>AF047660-5|AAM54168.1| 733|Caenorhabditis elegans Nuclear hormone
receptor familyprotein 66, isoform c protein.
Length = 733
Score = 27.1 bits (57), Expect = 5.5
Identities = 18/63 (28%), Positives = 29/63 (46%)
Frame = -3
Query: 253 FGSLKDFFPLLNGSGTPLECDLKTASSECLPPFTVLQD*FGNSWQRVTVLFTVHKFFLGR 74
F ++ +F NG+ L+ D +T ++ LP FT D G ++ + T LG
Sbjct: 540 FNNIAKYFE--NGALKDLKLDYETTTNLFLPSFTHAMDTIGEKMKKNNITETELTILLGL 597
Query: 73 SLL 65
LL
Sbjct: 598 VLL 600
>AC006631-2|AAL02500.1| 142|Caenorhabditis elegans Hypothetical
protein F27B3.7 protein.
Length = 142
Score = 27.1 bits (57), Expect = 5.5
Identities = 14/36 (38%), Positives = 20/36 (55%), Gaps = 5/36 (13%)
Frame = +3
Query: 207 VPLPLRRGK-----KSFREPNNMSKNTASRSVMKSD 299
+PL +RR KS +P N+ NTA ++M SD
Sbjct: 25 IPLEIRRKHNLTQLKSMIDPQNLDDNTALEAIMNSD 60
>Z81519-2|CAB04217.1| 468|Caenorhabditis elegans Hypothetical
protein F29C12.5 protein.
Length = 468
Score = 26.6 bits (56), Expect = 7.2
Identities = 11/21 (52%), Positives = 13/21 (61%)
Frame = -3
Query: 226 LLNGSGTPLECDLKTASSECL 164
L+ GSG P+E L A ECL
Sbjct: 240 LIEGSGKPMEIRLDIAEKECL 260
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,611,651
Number of Sequences: 27780
Number of extensions: 189568
Number of successful extensions: 598
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 579
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 598
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 682028672
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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