Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_J02
         (420 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g44120.2 68415.m05488 60S ribosomal protein L7 (RPL7C)              81   2e-16
At2g44120.1 68415.m05487 60S ribosomal protein L7 (RPL7C)              81   2e-16
At3g13580.3 68416.m01710 60S ribosomal protein L7 (RPL7D) simila...    81   3e-16
At3g13580.2 68416.m01709 60S ribosomal protein L7 (RPL7D) simila...    81   3e-16
At3g13580.1 68416.m01708 60S ribosomal protein L7 (RPL7D) simila...    81   3e-16
At2g01250.1 68415.m00037 60S ribosomal protein L7 (RPL7B)              78   3e-15
At1g80750.1 68414.m09474 60S ribosomal protein L7 (RPL7A) simila...    45   2e-05
At1g31820.1 68414.m03908 amino acid permease family protein weak...    31   0.42 
At3g52860.1 68416.m05825 expressed protein                             29   1.3  
At1g23180.1 68414.m02896 armadillo/beta-catenin repeat family pr...    28   2.2  
At3g54690.1 68416.m06051 sugar isomerase (SIS) domain-containing...    28   3.0  
At1g26540.1 68414.m03234 agenet domain-containing protein contai...    27   3.9  
At3g09120.1 68416.m01073 hypothetical protein contains Pfam prof...    27   5.2  
At5g45310.1 68418.m05562 expressed protein                             26   9.0  
At4g11450.1 68417.m01843 expressed protein                             26   9.0  

>At2g44120.2 68415.m05488 60S ribosomal protein L7 (RPL7C) 
          Length = 247

 Score = 81.4 bits (192), Expect = 2e-16
 Identities = 40/97 (41%), Positives = 57/97 (58%)
 Frame = +2

Query: 128 VPESVXXXXXXXXXXXXXXXQITLKRRSASIKKRKEIFQRAEQYVKEYRIEERDEIRLAR 307
           VPESV                  +  +  S++ RK IF+RAEQY KEY  ++ + IRL R
Sbjct: 13  VPESVLKKIKRQEEWALAKKDEAVAAKKKSVEARKLIFKRAEQYAKEYAEKDNELIRLKR 72

Query: 308 QARNRGNYYVPGEAKLAFVIRIRGVNQVSAKVRTVLQ 418
           +A+ +G +YV  EAKL F+IRIRG+N +  K + +LQ
Sbjct: 73  EAKLKGGFYVDPEAKLLFIIRIRGINAIDPKTKKILQ 109


>At2g44120.1 68415.m05487 60S ribosomal protein L7 (RPL7C) 
          Length = 242

 Score = 81.4 bits (192), Expect = 2e-16
 Identities = 40/97 (41%), Positives = 57/97 (58%)
 Frame = +2

Query: 128 VPESVXXXXXXXXXXXXXXXQITLKRRSASIKKRKEIFQRAEQYVKEYRIEERDEIRLAR 307
           VPESV                  +  +  S++ RK IF+RAEQY KEY  ++ + IRL R
Sbjct: 8   VPESVLKKIKRQEEWALAKKDEAVAAKKKSVEARKLIFKRAEQYAKEYAEKDNELIRLKR 67

Query: 308 QARNRGNYYVPGEAKLAFVIRIRGVNQVSAKVRTVLQ 418
           +A+ +G +YV  EAKL F+IRIRG+N +  K + +LQ
Sbjct: 68  EAKLKGGFYVDPEAKLLFIIRIRGINAIDPKTKKILQ 104


>At3g13580.3 68416.m01710 60S ribosomal protein L7 (RPL7D) similar
           to 60S ribosomal protein L7 GB:AAD14525 GI:4262232 from
           [Arabidopsis thaliana]
          Length = 244

 Score = 81.0 bits (191), Expect = 3e-16
 Identities = 41/104 (39%), Positives = 61/104 (58%)
 Frame = +2

Query: 107 DSNTLPTVPESVXXXXXXXXXXXXXXXQITLKRRSASIKKRKEIFQRAEQYVKEYRIEER 286
           ++ +   VPESV               Q     +  + +KRK IF RA+QY KEY+ +ER
Sbjct: 3   EAESKTVVPESVLKKRKREEEWALAKKQELEAAKKQNAEKRKLIFNRAKQYSKEYQEKER 62

Query: 287 DEIRLARQARNRGNYYVPGEAKLAFVIRIRGVNQVSAKVRTVLQ 418
           + I+L R+A+ +G +YV  EAKL F+IRIRG+N +  K + +LQ
Sbjct: 63  ELIQLKREAKLKGGFYVDPEAKLLFIIRIRGINAIDPKTKKILQ 106


>At3g13580.2 68416.m01709 60S ribosomal protein L7 (RPL7D) similar
           to 60S ribosomal protein L7 GB:AAD14525 GI:4262232 from
           [Arabidopsis thaliana]
          Length = 244

 Score = 81.0 bits (191), Expect = 3e-16
 Identities = 41/104 (39%), Positives = 61/104 (58%)
 Frame = +2

Query: 107 DSNTLPTVPESVXXXXXXXXXXXXXXXQITLKRRSASIKKRKEIFQRAEQYVKEYRIEER 286
           ++ +   VPESV               Q     +  + +KRK IF RA+QY KEY+ +ER
Sbjct: 3   EAESKTVVPESVLKKRKREEEWALAKKQELEAAKKQNAEKRKLIFNRAKQYSKEYQEKER 62

Query: 287 DEIRLARQARNRGNYYVPGEAKLAFVIRIRGVNQVSAKVRTVLQ 418
           + I+L R+A+ +G +YV  EAKL F+IRIRG+N +  K + +LQ
Sbjct: 63  ELIQLKREAKLKGGFYVDPEAKLLFIIRIRGINAIDPKTKKILQ 106


>At3g13580.1 68416.m01708 60S ribosomal protein L7 (RPL7D) similar
           to 60S ribosomal protein L7 GB:AAD14525 GI:4262232 from
           [Arabidopsis thaliana]
          Length = 244

 Score = 81.0 bits (191), Expect = 3e-16
 Identities = 41/104 (39%), Positives = 61/104 (58%)
 Frame = +2

Query: 107 DSNTLPTVPESVXXXXXXXXXXXXXXXQITLKRRSASIKKRKEIFQRAEQYVKEYRIEER 286
           ++ +   VPESV               Q     +  + +KRK IF RA+QY KEY+ +ER
Sbjct: 3   EAESKTVVPESVLKKRKREEEWALAKKQELEAAKKQNAEKRKLIFNRAKQYSKEYQEKER 62

Query: 287 DEIRLARQARNRGNYYVPGEAKLAFVIRIRGVNQVSAKVRTVLQ 418
           + I+L R+A+ +G +YV  EAKL F+IRIRG+N +  K + +LQ
Sbjct: 63  ELIQLKREAKLKGGFYVDPEAKLLFIIRIRGINAIDPKTKKILQ 106


>At2g01250.1 68415.m00037 60S ribosomal protein L7 (RPL7B)
          Length = 242

 Score = 77.8 bits (183), Expect = 3e-15
 Identities = 40/97 (41%), Positives = 56/97 (57%)
 Frame = +2

Query: 128 VPESVXXXXXXXXXXXXXXXQITLKRRSASIKKRKEIFQRAEQYVKEYRIEERDEIRLAR 307
           VPESV               Q     +  + + RK IF+RAEQY KEY  +E++ I L R
Sbjct: 8   VPESVLKKRKREEEWALEKKQNVEAAKKKNAENRKLIFKRAEQYSKEYAEKEKELISLKR 67

Query: 308 QARNRGNYYVPGEAKLAFVIRIRGVNQVSAKVRTVLQ 418
           +A+ +G +YV  EAKL F+IRIRG+N +  K + +LQ
Sbjct: 68  EAKLKGGFYVDPEAKLLFIIRIRGINAIDPKTKKILQ 104


>At1g80750.1 68414.m09474 60S ribosomal protein L7 (RPL7A) similar
           to ribosomal protein L7 GB:AAA03081 GI:307388 from [Homo
           sapiens]
          Length = 247

 Score = 44.8 bits (101), Expect = 2e-05
 Identities = 22/67 (32%), Positives = 41/67 (61%), Gaps = 2/67 (2%)
 Frame = +2

Query: 221 KKRKEI--FQRAEQYVKEYRIEERDEIRLARQARNRGNYYVPGEAKLAFVIRIRGVNQVS 394
           KK+K++   +R E +V E+R +E D IR+ ++ +   +   P ++ L F+IRI+G N + 
Sbjct: 41  KKKKKVSDIKRPEDFVHEFRAKEVDMIRMKQRVKRPKSSPPPVKSDLVFIIRIQGKNDMH 100

Query: 395 AKVRTVL 415
            K + +L
Sbjct: 101 PKTKRIL 107


>At1g31820.1 68414.m03908 amino acid permease family protein weak
           similarity to asc-type amino acid transporter 2 [Mus
           musculus] GI:18148438; contains Pfam profile PF00324:
           Amino acid permease
          Length = 482

 Score = 30.7 bits (66), Expect = 0.42
 Identities = 15/36 (41%), Positives = 25/36 (69%), Gaps = 1/36 (2%)
 Frame = -3

Query: 286 TLLDAVFFDILFGSLKDFFPLLNGSGT-PLECDLKT 182
           TL  A+ + ++F +L +F PLL+G+G  PL+ +L T
Sbjct: 245 TLPKALCYGVIFVALSNFLPLLSGTGAIPLDRELWT 280


>At3g52860.1 68416.m05825 expressed protein 
          Length = 156

 Score = 29.1 bits (62), Expect = 1.3
 Identities = 13/33 (39%), Positives = 20/33 (60%)
 Frame = +2

Query: 197 LKRRSASIKKRKEIFQRAEQYVKEYRIEERDEI 295
           LK +   IKK   +FQ +++ VKE   + RDE+
Sbjct: 121 LKTKDELIKKHMRLFQESQKLVKEQIEKHRDEL 153


>At1g23180.1 68414.m02896 armadillo/beta-catenin repeat family
           protein contains Pfam profile: PF00514
           armadillo/beta-catenin-like repeat
          Length = 834

 Score = 28.3 bits (60), Expect = 2.2
 Identities = 12/18 (66%), Positives = 14/18 (77%)
 Frame = +1

Query: 232 RNLSESRTICQRIPHRGA 285
           +NLS SRT+CQRI   GA
Sbjct: 492 KNLSLSRTVCQRIEAEGA 509


>At3g54690.1 68416.m06051 sugar isomerase (SIS) domain-containing
           protein / CBS domain-containing protein similar to
           SP|Q47334 Polysialic acid capsule expression protein
           kpsF {Escherichia coli}; contains Pfam profiles PF01380:
           sugar isomerase (SIS) domain, PF00571: CBS domain
          Length = 350

 Score = 27.9 bits (59), Expect = 3.0
 Identities = 17/51 (33%), Positives = 27/51 (52%)
 Frame = -3

Query: 349 SFTGHIIIATVTSLSCQSDFITLLDAVFFDILFGSLKDFFPLLNGSGTPLE 197
           +F  + +  T+ SLS +S F++ LDA+  DI   S +D     + SG   E
Sbjct: 80  AFVANKVSQTLVSLSFRSSFLSPLDALHGDIGALSPRDVLVFFSKSGATEE 130


>At1g26540.1 68414.m03234 agenet domain-containing protein contains
           Pfam PF05641: Agenet domain
          Length = 695

 Score = 27.5 bits (58), Expect = 3.9
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = -1

Query: 390 TWLTPRIRMTNASLASPGT 334
           TW+ P I  +N S+ SPGT
Sbjct: 140 TWIQPEIEESNKSMFSPGT 158


>At3g09120.1 68416.m01073 hypothetical protein contains Pfam profile
           PF05056: Protein of unknown function (DUF674)
          Length = 333

 Score = 27.1 bits (57), Expect = 5.2
 Identities = 16/45 (35%), Positives = 23/45 (51%)
 Frame = -3

Query: 319 VTSLSCQSDFITLLDAVFFDILFGSLKDFFPLLNGSGTPLECDLK 185
           V  +SC+S FI   D     ++  S+ +   +LNG G P   DLK
Sbjct: 137 VVFVSCRSSFILTDD---LKVMLNSIDEIVKVLNGLGYPNINDLK 178


>At5g45310.1 68418.m05562 expressed protein
          Length = 352

 Score = 26.2 bits (55), Expect = 9.0
 Identities = 11/21 (52%), Positives = 15/21 (71%)
 Frame = +2

Query: 227 RKEIFQRAEQYVKEYRIEERD 289
           RKEI +   + +KEYRI E+D
Sbjct: 107 RKEIEKNLREAIKEYRIMEQD 127


>At4g11450.1 68417.m01843 expressed protein 
          Length = 694

 Score = 26.2 bits (55), Expect = 9.0
 Identities = 13/34 (38%), Positives = 16/34 (47%)
 Frame = -3

Query: 241 KDFFPLLNGSGTPLECDLKTASSECLPPFTVLQD 140
           KD+  +L  S   L C LK  S   LP F  + D
Sbjct: 263 KDYTSVLKSSPVHLHCRLKMESKNGLPVFQFVSD 296


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,028,378
Number of Sequences: 28952
Number of extensions: 174178
Number of successful extensions: 403
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 398
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 403
length of database: 12,070,560
effective HSP length: 74
effective length of database: 9,928,112
effective search space used: 645327280
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)