Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_J01
         (574 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_16903| Best HMM Match : No HMM Matches (HMM E-Value=.)             127   7e-30
SB_55500| Best HMM Match : Ribosomal_L7Ae (HMM E-Value=2.8e-24)        35   0.054
SB_25921| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.6  
SB_44900| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.2  
SB_19395| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.2  
SB_46370| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.2  
SB_2190| Best HMM Match : SGS (HMM E-Value=2.5)                        28   6.2  
SB_4001| Best HMM Match : Exo_endo_phos (HMM E-Value=0.0056)           27   8.2  

>SB_16903| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 263

 Score =  127 bits (306), Expect = 7e-30
 Identities = 58/111 (52%), Positives = 73/111 (65%)
 Frame = +3

Query: 189 LFEKRTKNFAIGQDIQPTRDLSRFVRWPKYIRIQRQKAVLQRRLKVPPPINQFTQTLDKT 368
           L EKR +NF IG DIQP RDLSRFVRWP+Y+++QRQK++L +RLKVPP INQFTQ LD+ 
Sbjct: 31  LIEKRPRNFGIGGDIQPKRDLSRFVRWPRYVKLQRQKSLLYQRLKVPPAINQFTQALDRQ 90

Query: 369 TAKGLFKILEKYRPETXXXXXXXXXXXXXXXXXXXDEPPPKRPNTLRAGTN 521
           +   LFK+L KYRPET                   +E P K+P  ++ G N
Sbjct: 91  STVQLFKLLHKYRPETKAEKKARLSAKAEKKAEGKEEAPGKKPMLVKYGIN 141


>SB_55500| Best HMM Match : Ribosomal_L7Ae (HMM E-Value=2.8e-24)
          Length = 172

 Score = 34.7 bits (76), Expect = 0.054
 Identities = 16/47 (34%), Positives = 21/47 (44%)
 Frame = +3

Query: 381 LFKILEKYRPETXXXXXXXXXXXXXXXXXXXDEPPPKRPNTLRAGTN 521
           LFK+L KYRPET                   +E P K+P  ++ G N
Sbjct: 4   LFKLLHKYRPETKAEKKARLSAKAEKKAEGKEEAPGKKPMLVKYGIN 50


>SB_25921| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 162

 Score = 28.7 bits (61), Expect = 3.6
 Identities = 12/17 (70%), Positives = 13/17 (76%)
 Frame = -1

Query: 52 IRDLFRTLVPNSCSPGD 2
          IR LF  L+ NSCSPGD
Sbjct: 30 IRILFLDLISNSCSPGD 46


>SB_44900| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 136

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 10/14 (71%), Positives = 12/14 (85%)
 Frame = -1

Query: 43 LFRTLVPNSCSPGD 2
          +FRT+  NSCSPGD
Sbjct: 7  IFRTISSNSCSPGD 20


>SB_19395| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 832

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 17/50 (34%), Positives = 23/50 (46%)
 Frame = +3

Query: 252 SRFVRWPKYIRIQRQKAVLQRRLKVPPPINQFTQTLDKTTAKGLFKILEK 401
           SR  RW  Y R+   KA+LQR  ++   I Q T  + K        +L K
Sbjct: 508 SRTFRWDPYSRMSTLKALLQRMEQLKTQIVQETCEIKKLEKLSRLVLLRK 557


>SB_46370| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 204

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 10/14 (71%), Positives = 11/14 (78%)
 Frame = +1

Query: 1  DPPGCRNSARGFGI 42
          DPPGCRNS  G G+
Sbjct: 34 DPPGCRNSIDGNGV 47


>SB_2190| Best HMM Match : SGS (HMM E-Value=2.5)
          Length = 221

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 13/21 (61%), Positives = 14/21 (66%)
 Frame = -1

Query: 64  GHE*IRDLFRTLVPNSCSPGD 2
           GHE   D+ R L  NSCSPGD
Sbjct: 88  GHE---DIKRALASNSCSPGD 105


>SB_4001| Best HMM Match : Exo_endo_phos (HMM E-Value=0.0056)
          Length = 508

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 19/54 (35%), Positives = 23/54 (42%), Gaps = 1/54 (1%)
 Frame = +2

Query: 251 IPFRAMAEIYSHPA-SKGCVTASSQSAAANQPVHPDIR*NHSQRSVQDLGEIQA 409
           +P     +   HP  S GC T SS S  A  PV PD    + Q     L E+ A
Sbjct: 65  LPVVTTVDSTGHPQLSSGCSTNSSSSQTAPFPVIPDTIIANMQSLFAKLDELYA 118


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,770,425
Number of Sequences: 59808
Number of extensions: 292922
Number of successful extensions: 1481
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1444
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1481
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1361520496
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)