Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_J01
         (574 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g62870.1 68416.m07063 60S ribosomal protein L7A (RPL7aB) 60S ...   109   2e-24
At2g47610.1 68415.m05940 60S ribosomal protein L7A (RPL7aA)           108   2e-24
At4g27120.2 68417.m03898 expressed protein                             27   6.7  
At4g27120.1 68417.m03897 expressed protein                             27   6.7  

>At3g62870.1 68416.m07063 60S ribosomal protein L7A (RPL7aB) 60S
           RIBOSOMAL PROTEIN L7A - Oryza sativa,
           SWISSPROT:RL7A_ORYSA
          Length = 256

 Score =  109 bits (261), Expect = 2e-24
 Identities = 48/75 (64%), Positives = 60/75 (80%)
 Frame = +3

Query: 189 LFEKRTKNFAIGQDIQPTRDLSRFVRWPKYIRIQRQKAVLQRRLKVPPPINQFTQTLDKT 368
           LFE+R K F IG  + P +DLSR+++WPK IR+QRQK +L++RLKVPP +NQFT+TLDK 
Sbjct: 22  LFERRPKQFGIGGALPPKKDLSRYIKWPKSIRLQRQKRILKQRLKVPPALNQFTKTLDKN 81

Query: 369 TAKGLFKILEKYRPE 413
            A  LFKIL KYRPE
Sbjct: 82  LATSLFKILLKYRPE 96


>At2g47610.1 68415.m05940 60S ribosomal protein L7A (RPL7aA)
          Length = 257

 Score =  108 bits (260), Expect = 2e-24
 Identities = 47/75 (62%), Positives = 60/75 (80%)
 Frame = +3

Query: 189 LFEKRTKNFAIGQDIQPTRDLSRFVRWPKYIRIQRQKAVLQRRLKVPPPINQFTQTLDKT 368
           LFE+R K F IG  + P +DLSR+++WPK IR+QRQK +L++RLKVPP +NQFT+TLDK 
Sbjct: 23  LFERRPKQFGIGGALPPKKDLSRYIKWPKSIRLQRQKRILKQRLKVPPALNQFTKTLDKN 82

Query: 369 TAKGLFKILEKYRPE 413
            A  LFK+L KYRPE
Sbjct: 83  LATSLFKVLLKYRPE 97


>At4g27120.2 68417.m03898 expressed protein
          Length = 298

 Score = 27.5 bits (58), Expect = 6.7
 Identities = 14/46 (30%), Positives = 24/46 (52%)
 Frame = +2

Query: 419 GSQERASKESRRSQGC*ER*AATEKAKHPTRWNQSNWLPELVEKKE 556
           G+Q RASK+  + +   E     E+A   +R  + +W  E+  KK+
Sbjct: 89  GTQARASKKKEKKRQEREAQRQAEEATRESRNTKQDWYAEMRRKKD 134


>At4g27120.1 68417.m03897 expressed protein
          Length = 298

 Score = 27.5 bits (58), Expect = 6.7
 Identities = 14/46 (30%), Positives = 24/46 (52%)
 Frame = +2

Query: 419 GSQERASKESRRSQGC*ER*AATEKAKHPTRWNQSNWLPELVEKKE 556
           G+Q RASK+  + +   E     E+A   +R  + +W  E+  KK+
Sbjct: 89  GTQARASKKKEKKRQEREAQRQAEEATRESRNTKQDWYAEMRRKKD 134


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,753,343
Number of Sequences: 28952
Number of extensions: 205055
Number of successful extensions: 539
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 537
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 539
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1112061928
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)