Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_I24
         (455 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAP27G11.16 |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    27   1.8  
SPBC4F6.06 |kin1||microtubule affinity-regulating kinase Kin1 |S...    27   1.8  
SPBC18E5.12c |mas2|SPBC23G7.02c|mitochondrial processing peptida...    26   2.4  
SPBC1773.14 |arg7||argininosuccinate lyase |Schizosaccharomyces ...    25   4.2  
SPAC23E2.03c |ste7||meiotic suppressor protein Ste7|Schizosaccha...    25   4.2  
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M...    25   4.2  
SPBC21C3.14c |||sequence orphan|Schizosaccharomyces pombe|chr 2|...    25   4.2  
SPBC21D10.05c |ucp3|soc2|GTPase activating protein Ucp3 |Schizos...    25   5.5  
SPAC9E9.05 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||...    25   7.3  
SPAC17C9.03 |tif471||translation initiation factor eIF4G |Schizo...    25   7.3  
SPBC27B12.10c |tom7||mitochondrial TOM complex subunit Tom7|Schi...    25   7.3  
SPCC1020.10 |oca2||serine/threonine protein kinase Oca2 |Schizos...    24   9.6  

>SPAP27G11.16 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 104

 Score = 26.6 bits (56), Expect = 1.8
 Identities = 10/28 (35%), Positives = 22/28 (78%)
 Frame = +1

Query: 28  SIKIISNNPIATTQC*FKKLFQTSFTIS 111
           +++I+ +  IA ++C F+K++ T+F+IS
Sbjct: 63  TLRILRDFIIAASKCEFEKIWSTTFSIS 90


>SPBC4F6.06 |kin1||microtubule affinity-regulating kinase Kin1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 891

 Score = 26.6 bits (56), Expect = 1.8
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = +3

Query: 174 KKQLYESRIRHVYHQHQNP 230
           KK  +E RIRH  H  +NP
Sbjct: 467 KKSFFEFRIRHAAHDIENP 485


>SPBC18E5.12c |mas2|SPBC23G7.02c|mitochondrial processing peptidase
           complex alpha subunit Mas2|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 494

 Score = 26.2 bits (55), Expect = 2.4
 Identities = 15/54 (27%), Positives = 23/54 (42%), Gaps = 1/54 (1%)
 Frame = +2

Query: 272 EKIIIVYP-IDQAPPLSITESTNGVQQKQQIPMYNSIPASQSSGFQSINRPXAP 430
           E + + Y  I Q     IT+   G      +P   +IP+  + GF  I +  AP
Sbjct: 225 EHLTLAYAGIPQEIAKEITKELYGHLPSSSLPPLEAIPSHYTGGFMGIKKSEAP 278


>SPBC1773.14 |arg7||argininosuccinate lyase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 461

 Score = 25.4 bits (53), Expect = 4.2
 Identities = 13/44 (29%), Positives = 22/44 (50%)
 Frame = +3

Query: 66  TMLIQEIIPDLLYHFLREEYLNHLSLFHQCHHLTMNKKQLYESR 197
           T + + + PDLL   L E  +     F Q HH++ +  ++ E R
Sbjct: 359 TKIAESLTPDLLATDLAEYLVRKGLPFRQTHHISGSAVRMAEER 402


>SPAC23E2.03c |ste7||meiotic suppressor protein
           Ste7|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 569

 Score = 25.4 bits (53), Expect = 4.2
 Identities = 23/71 (32%), Positives = 33/71 (46%), Gaps = 1/71 (1%)
 Frame = +2

Query: 221 SKPTEDIGPSESADTTTEKIIIVYPIDQAPPLSITESTNGVQQKQQIPMYNSIPASQSSG 400
           SK    +G S+SA     ++I+V P     PLS   S     +  Q+P ++S+  S S  
Sbjct: 129 SKRYAFLGSSQSAKA---ELIMVPPNLAGKPLSANSSFGSSAKTFQLPEFDSVTPSASLY 185

Query: 401 FQ-SINRPXAP 430
            Q S N   AP
Sbjct: 186 KQPSFNSNPAP 196


>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 309

 Score = 25.4 bits (53), Expect = 4.2
 Identities = 21/85 (24%), Positives = 30/85 (35%), Gaps = 2/85 (2%)
 Frame = +2

Query: 200 PPRLPPTSKPTEDIGPSESADTTTEKIIIVYPIDQAPPLSITESTNGVQQKQQI-PMYNS 376
           P  LPP ++P   +    SA +    +  + P    PPLS     N   +     P    
Sbjct: 168 PSSLPPPAQPAAPVKSPPSAPSLPSAVPPMPPKVPPPPLSQAPVANTSSRPSSFAPPAGH 227

Query: 377 IPASQSSGFQSINR-PXAPERKITP 448
            P   S   +  NR P  P   + P
Sbjct: 228 APNVTSESPKFPNRGPSIPSASVPP 252


>SPBC21C3.14c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 841

 Score = 25.4 bits (53), Expect = 4.2
 Identities = 16/52 (30%), Positives = 25/52 (48%), Gaps = 1/52 (1%)
 Frame = +2

Query: 161 PDDEQETIIRISYPPRLPPT-SKPTEDIGPSESADTTTEKIIIVYPIDQAPP 313
           P  E E +  I  P  +P + ++ T    PS+  ++  EKI  + PID   P
Sbjct: 694 PKSEAEKVYSI-LPIDVPQSVAEETYSFKPSDIPESEAEKIYSILPIDVKDP 744


>SPBC21D10.05c |ucp3|soc2|GTPase activating protein Ucp3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 601

 Score = 25.0 bits (52), Expect = 5.5
 Identities = 10/28 (35%), Positives = 14/28 (50%)
 Frame = +2

Query: 194 SYPPRLPPTSKPTEDIGPSESADTTTEK 277
           S PP LPP +K +    P  S  T+  +
Sbjct: 130 SKPPSLPPRTKSSSQSSPMASTSTSKSR 157


>SPAC9E9.05 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 313

 Score = 24.6 bits (51), Expect = 7.3
 Identities = 17/70 (24%), Positives = 34/70 (48%), Gaps = 6/70 (8%)
 Frame = +2

Query: 164 DDEQETI--IRISYP--PRLPPTSKPTEDIGPSESADTTTEKIIIVYPIDQ--APPLSIT 325
           D+ Q+++  + I+ P  P LPP+S P      SES+      ++    + Q    P +++
Sbjct: 106 DENQQSVPTVSIASPSTPELPPSSSPLLPPNGSESSSPIPLSLLSTSSLQQRKITPSNLS 165

Query: 326 ESTNGVQQKQ 355
            ++  +  KQ
Sbjct: 166 NTSKPMDSKQ 175


>SPAC17C9.03 |tif471||translation initiation factor eIF4G
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1403

 Score = 24.6 bits (51), Expect = 7.3
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = +2

Query: 200 PPRLPPTSKPTEDIGPSESADTTTE 274
           P    PT+KP+ DI  ++ A  TT+
Sbjct: 244 PANGAPTNKPSTDINTTDPATQTTQ 268


>SPBC27B12.10c |tom7||mitochondrial TOM complex subunit
           Tom7|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 49

 Score = 24.6 bits (51), Expect = 7.3
 Identities = 7/15 (46%), Positives = 12/15 (80%)
 Frame = -1

Query: 347 VEHHSWIPLLIMVGL 303
           V H+ WIPL++ +G+
Sbjct: 21  VTHYGWIPLILWLGM 35


>SPCC1020.10 |oca2||serine/threonine protein kinase Oca2
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 650

 Score = 24.2 bits (50), Expect = 9.6
 Identities = 13/34 (38%), Positives = 20/34 (58%)
 Frame = +2

Query: 164 DDEQETIIRISYPPRLPPTSKPTEDIGPSESADT 265
           +++ +T ++I+ PPR PP      D   SE ADT
Sbjct: 28  ENKLDTELKITSPPRNPPQRLHPVDF--SEHADT 59


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,689,953
Number of Sequences: 5004
Number of extensions: 30996
Number of successful extensions: 107
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 106
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 107
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 170285640
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)