Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0001_I24
(455 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_05_0520 + 25139314-25139364,25139580-25139711,25141594-251417... 33 0.082
01_06_0233 + 27735881-27736238,27736337-27736453,27736559-277367... 29 1.3
09_02_0254 - 6334767-6335465 29 1.8
07_03_0685 - 20679883-20679927,20680034-20680087,20680179-206803... 29 1.8
09_03_0111 - 12440818-12441129,12441242-12441585,12441663-124419... 28 3.1
04_04_1226 - 31872413-31873036 28 3.1
12_02_1091 - 26001129-26001181,26001292-26001325,26001339-260014... 28 4.1
08_01_0519 - 4518256-4519623,4520840-4521230,4521313-4521525,452... 28 4.1
05_04_0131 + 18290201-18290650,18291474-18291626,18291950-182920... 28 4.1
09_04_0324 - 16686872-16687074,16687479-16687521,16687735-166880... 27 5.4
01_07_0269 - 42414345-42415328,42415419-42415551,42415939-424160... 27 7.2
01_01_0639 + 4825703-4826155,4826344-4826559,4826683-4827411 27 7.2
05_01_0342 - 2691294-2691441,2691589-2691667,2691737-2691799,269... 27 9.5
02_01_0035 - 220036-221419,222050-222801 27 9.5
>03_05_0520 +
25139314-25139364,25139580-25139711,25141594-25141731,
25143191-25143241,25143662-25143751,25143854-25144000,
25144108-25144218,25144307-25144375,25144777-25145517,
25145840-25146004,25146376-25146442,25146580-25146704,
25148714-25148983,25149065-25149199,25149316-25149497,
25149669-25149744
Length = 849
Score = 33.5 bits (73), Expect = 0.082
Identities = 23/91 (25%), Positives = 40/91 (43%), Gaps = 2/91 (2%)
Frame = +2
Query: 188 RISYPPRLP--PTSKPTEDIGPSESADTTTEKIIIVYPIDQAPPLSITESTNGVQQKQQI 361
++ P +P PT+ T S SA+T + + + P A L + + + I
Sbjct: 299 KVGSQPSVPVVPTTISTSTAAVSVSAETISSPVRPIVPTTTAAVLPASVTARSAPEN--I 356
Query: 362 PMYNSIPASQSSGFQSINRPXAPERKITPAL 454
P S PA+ SS + + P R+ +PA+
Sbjct: 357 PAVTSAPANSSSTLKDDDNMSFPSRRSSPAV 387
>01_06_0233 +
27735881-27736238,27736337-27736453,27736559-27736713,
27736796-27736870,27736934-27737242,27737431-27737742,
27737844-27738218
Length = 566
Score = 29.5 bits (63), Expect = 1.3
Identities = 12/26 (46%), Positives = 14/26 (53%)
Frame = +2
Query: 200 PPRLPPTSKPTEDIGPSESADTTTEK 277
PP +PP+SK D GP D EK
Sbjct: 102 PPVVPPSSKNVRDSGPPSEIDLVKEK 127
>09_02_0254 - 6334767-6335465
Length = 232
Score = 29.1 bits (62), Expect = 1.8
Identities = 12/25 (48%), Positives = 14/25 (56%)
Frame = +2
Query: 200 PPRLPPTSKPTEDIGPSESADTTTE 274
PP PP KP + PS + TTTE
Sbjct: 173 PPTPPPPEKPAAERSPSTTPTTTTE 197
>07_03_0685 -
20679883-20679927,20680034-20680087,20680179-20680390,
20680476-20680550,20683094-20683168,20686196-20686264,
20686349-20686502,20686577-20686654,20689102-20689194,
20689491-20689640,20690134-20690268,20691009-20691098,
20691412-20691453,20691796-20692053,20692131-20692207,
20693126-20693186,20693687-20693905,20694936-20695208,
20695314-20695505,20695841-20696011
Length = 840
Score = 29.1 bits (62), Expect = 1.8
Identities = 22/71 (30%), Positives = 36/71 (50%), Gaps = 6/71 (8%)
Frame = +2
Query: 164 DDEQET-IIRISYPPRLPPTSKPTEDIGPSESADTTTEKII-IVYPIDQAPPL----SIT 325
+ EQ T IIR+ P +LPP TED+ S T + + V+P + P + +I
Sbjct: 640 EKEQSTEIIRLPVPYQLPPKPYGTEDVPWSWDKRYTKKDVYGSVWPRHETPDMKTESNII 699
Query: 326 ESTNGVQQKQQ 358
E+ NG + ++
Sbjct: 700 ETENGAKTNRR 710
>09_03_0111 -
12440818-12441129,12441242-12441585,12441663-12441989,
12443444-12443602,12443687-12443784,12444745-12444821
Length = 438
Score = 28.3 bits (60), Expect = 3.1
Identities = 12/26 (46%), Positives = 18/26 (69%), Gaps = 1/26 (3%)
Frame = +3
Query: 69 MLIQEIIPD-LLYHFLREEYLNHLSL 143
ML+ E IP+ L+H + E + NH+SL
Sbjct: 223 MLVYEFIPNGTLFHLIHENHGNHISL 248
>04_04_1226 - 31872413-31873036
Length = 207
Score = 28.3 bits (60), Expect = 3.1
Identities = 14/35 (40%), Positives = 18/35 (51%)
Frame = +2
Query: 245 PSESADTTTEKIIIVYPIDQAPPLSITESTNGVQQ 349
P +S EK V PI PPL TE ++ +QQ
Sbjct: 29 PRKSEYGMHEKPYSVQPIQSVPPLHSTEDSSNIQQ 63
>12_02_1091 -
26001129-26001181,26001292-26001325,26001339-26001437,
26002327-26002369,26002389-26002494,26002776-26002818,
26003526-26003579,26003831-26003911,26003997-26004119,
26004197-26004846,26004928-26005554,26005633-26005870,
26006082-26006258,26006373-26006723,26006824-26007111,
26008340-26008462,26008551-26009007,26009115-26009263,
26009466-26009489
Length = 1239
Score = 27.9 bits (59), Expect = 4.1
Identities = 16/60 (26%), Positives = 29/60 (48%), Gaps = 3/60 (5%)
Frame = +2
Query: 242 GPSESADTTTEKIIIVYPIDQAPP---LSITESTNGVQQKQQIPMYNSIPASQSSGFQSI 412
G S + TT+K+II Y Q+P SI E + ++ + ++ +P +G S+
Sbjct: 586 GTSTVPEVTTDKLIIPYVEHQSPSASHASIFEKLDAHEEAELDDSFDEVPPGTEAGLASL 645
>08_01_0519 - 4518256-4519623,4520840-4521230,4521313-4521525,
4521632-4521723,4522226-4522342,4522641-4522704,
4523175-4523228,4523579-4523666,4523788-4524023,
4525258-4525478,4525634-4525827,4525938-4525995,
4526771-4526824,4526851-4527473,4527580-4527640,
4528417-4528590,4528803-4529063,4529201-4529320,
4529388-4530022,4530062-4530828,4530915-4531012,
4531101-4531155,4531230-4531318
Length = 2010
Score = 27.9 bits (59), Expect = 4.1
Identities = 12/35 (34%), Positives = 23/35 (65%)
Frame = +2
Query: 290 YPIDQAPPLSITESTNGVQQKQQIPMYNSIPASQS 394
+P+ A +S ++ + +QQ+ Q P ++IP+SQS
Sbjct: 1659 HPLSGASAVSTVQNGSQMQQQSQGPASSAIPSSQS 1693
>05_04_0131 +
18290201-18290650,18291474-18291626,18291950-18292042,
18292285-18292313,18292702-18292795,18292941-18293153
Length = 343
Score = 27.9 bits (59), Expect = 4.1
Identities = 15/58 (25%), Positives = 28/58 (48%), Gaps = 1/58 (1%)
Frame = +2
Query: 224 KPTEDIGPSESADTTTEKIIIVYPIDQAPPLSITESTNGVQQ-KQQIPMYNSIPASQS 394
+P +D P E++ +TTE+ D+ PP ++TE + K + + P Q+
Sbjct: 89 QPADDSEPEETSRSTTEEKKEENKPDETPPSTVTEPEEDEDEYKPTVRSWGMFPRPQN 146
>09_04_0324 -
16686872-16687074,16687479-16687521,16687735-16688068,
16688190-16688854
Length = 414
Score = 27.5 bits (58), Expect = 5.4
Identities = 12/41 (29%), Positives = 19/41 (46%)
Frame = +2
Query: 200 PPRLPPTSKPTEDIGPSESADTTTEKIIIVYPIDQAPPLSI 322
PP PP S P PS DT + +I++ + + P +
Sbjct: 5 PPSPPPPSPPPAPAPPSSRWDTPVPQWVILWRVPRVYPADV 45
>01_07_0269 -
42414345-42415328,42415419-42415551,42415939-42416007,
42416459-42416672,42416785-42417040
Length = 551
Score = 27.1 bits (57), Expect = 7.2
Identities = 12/29 (41%), Positives = 16/29 (55%)
Frame = +2
Query: 245 PSESADTTTEKIIIVYPIDQAPPLSITES 331
PS+S D EK + P + PP S T+S
Sbjct: 259 PSDSCDFEVEKFVNKLPASEKPPGSSTDS 287
>01_01_0639 + 4825703-4826155,4826344-4826559,4826683-4827411
Length = 465
Score = 27.1 bits (57), Expect = 7.2
Identities = 17/77 (22%), Positives = 32/77 (41%), Gaps = 2/77 (2%)
Frame = +2
Query: 218 TSKPTEDIGPSES--ADTTTEKIIIVYPIDQAPPLSITESTNGVQQKQQIPMYNSIPASQ 391
TS P D G +E A++ + ++ + + APP S + P+ PA+
Sbjct: 278 TSPPVVDAGAAEEWYANSVSSPLLPFHQLPGAPPRISAPSARHFPEYDWCPLEKPRPATA 337
Query: 392 SSGFQSINRPXAPERKI 442
S + + P P + +
Sbjct: 338 QSTPRLAHMPVTPTKSV 354
>05_01_0342 -
2691294-2691441,2691589-2691667,2691737-2691799,
2692852-2692917,2694939-2695004,2695194-2695283,
2695376-2695463,2695552-2695629,2695732-2695824,
2695907-2696024,2696418-2696539,2696633-2696930,
2697645-2697649
Length = 437
Score = 26.6 bits (56), Expect = 9.5
Identities = 11/32 (34%), Positives = 16/32 (50%)
Frame = +2
Query: 218 TSKPTEDIGPSESADTTTEKIIIVYPIDQAPP 313
TS P + +GP + T E+ P+DQ P
Sbjct: 310 TSVPLDQVGPGDPQIPTAEETSTSRPLDQVEP 341
>02_01_0035 - 220036-221419,222050-222801
Length = 711
Score = 26.6 bits (56), Expect = 9.5
Identities = 14/40 (35%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
Frame = +3
Query: 132 HLSLFHQCHHLTMNKKQ-LYESRIRHVYHQHQNPQKTLVL 248
HL LFH+ HH +++Q +R +H H +P L L
Sbjct: 107 HLQLFHEQHHHQKHQQQPPPPARWAPQHHHHHHPHHHLGL 146
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,302,367
Number of Sequences: 37544
Number of extensions: 181173
Number of successful extensions: 647
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 637
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 647
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 895500300
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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