Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_I24
         (455 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_26162| Best HMM Match : HMG_box (HMM E-Value=1.5e-31)               30   1.0  
SB_59006| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.0  
SB_46921| Best HMM Match : Endomucin (HMM E-Value=6.3)                 30   1.0  
SB_25986| Best HMM Match : Myosin_head (HMM E-Value=1.4e-17)           30   1.0  
SB_55700| Best HMM Match : tRNA_bind (HMM E-Value=0.79)                29   1.8  
SB_33292| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   3.2  
SB_14830| Best HMM Match : NADH5_C (HMM E-Value=1.1)                   28   3.2  
SB_29909| Best HMM Match : Tymo_45kd_70kd (HMM E-Value=1.8)            28   3.2  
SB_21866| Best HMM Match : UCH (HMM E-Value=0)                         28   3.2  
SB_15908| Best HMM Match : LysR_substrate (HMM E-Value=8.5e-40)        28   3.2  
SB_54589| Best HMM Match : Extensin_2 (HMM E-Value=0.0081)             28   4.2  
SB_47680| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.2  
SB_52576| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   5.6  
SB_33411| Best HMM Match : 7tm_1 (HMM E-Value=0.03)                    27   5.6  
SB_6365| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   5.6  
SB_31590| Best HMM Match : His_leader (HMM E-Value=3.2)                27   5.6  
SB_52135| Best HMM Match : RCSD (HMM E-Value=4.8)                      27   7.4  
SB_45068| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.4  
SB_32254| Best HMM Match : zf-TRAF (HMM E-Value=2.5)                   27   7.4  
SB_53444| Best HMM Match : DUF40 (HMM E-Value=6.7)                     27   7.4  
SB_24871| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.4  
SB_21529| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.7  

>SB_26162| Best HMM Match : HMG_box (HMM E-Value=1.5e-31)
          Length = 367

 Score = 29.9 bits (64), Expect = 1.0
 Identities = 14/50 (28%), Positives = 25/50 (50%)
 Frame = +1

Query: 268 YRKNNNCVSY*SSPTIINNGIHEWCSTKTTNSNV*FNSC*PIFRISIYKP 417
           Y  + NC  Y +  T++N    ++  TK T     F  C P+ +++ Y+P
Sbjct: 31  YTGSINCARYFTDITLLNGDTRQY--TKPTRVKSHFRYCNPVIQVTQYRP 78


>SB_59006| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1211

 Score = 29.9 bits (64), Expect = 1.0
 Identities = 23/99 (23%), Positives = 41/99 (41%), Gaps = 6/99 (6%)
 Frame = +2

Query: 170 EQETIIRISYPPRLPP--TSKPTEDIGPSES--ADTTTEKIIIVYPIDQAPPLSITESTN 337
           + E  + IS  P+  P  T  P   + P  +  ++TT E     YP D  P + +T  +N
Sbjct: 395 DPEISVTISTQPKKAPGITVAPETTVVPETTVASETTAETHQTTYPRDPLPEMFVTTQSN 454

Query: 338 GVQQKQQIPMYNSIPASQSSGFQSI--NRPXAPERKITP 448
              +  + P   + P + ++   ++      APE    P
Sbjct: 455 TATETTEAPETTAEPETTAAPETTVEPETTKAPESAAAP 493


>SB_46921| Best HMM Match : Endomucin (HMM E-Value=6.3)
          Length = 312

 Score = 29.9 bits (64), Expect = 1.0
 Identities = 17/40 (42%), Positives = 18/40 (45%), Gaps = 1/40 (2%)
 Frame = +2

Query: 218 TSKPTEDIGPSESADTTTE-KIIIVYPIDQAPPLSITEST 334
           TSKPTED+G S    T  E      YP     P   T ST
Sbjct: 90  TSKPTEDVGTSPQPSTENETHTPTTYPTPPPNPTDDTSST 129


>SB_25986| Best HMM Match : Myosin_head (HMM E-Value=1.4e-17)
          Length = 1189

 Score = 29.9 bits (64), Expect = 1.0
 Identities = 21/79 (26%), Positives = 34/79 (43%)
 Frame = +2

Query: 161 PDDEQETIIRISYPPRLPPTSKPTEDIGPSESADTTTEKIIIVYPIDQAPPLSITESTNG 340
           P  E E       P   PP S+P    G + S+ T    ++ ++P  Q  P S   +TN 
Sbjct: 248 PSQEDEDPKEEGNPAASPPGSRPGSGQGAAVSSFTKPSAVLRIFPPAQVGPCS---ATNY 304

Query: 341 VQQKQQIPMYNSIPASQSS 397
           V   + +   NS+  + S+
Sbjct: 305 VAALKAVDADNSVIGTGSN 323


>SB_55700| Best HMM Match : tRNA_bind (HMM E-Value=0.79)
          Length = 632

 Score = 29.1 bits (62), Expect = 1.8
 Identities = 12/37 (32%), Positives = 23/37 (62%), Gaps = 1/37 (2%)
 Frame = +2

Query: 170 EQETIIRISYPPRLPPTSKPTEDIGPSE-SADTTTEK 277
           E +T++  +   + PPT  P+ +  P+E + DTT++K
Sbjct: 485 EDDTVVIFAGADKAPPTGTPSAETPPAEHTEDTTSDK 521


>SB_33292| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 896

 Score = 28.3 bits (60), Expect = 3.2
 Identities = 13/47 (27%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
 Frame = +2

Query: 227 PTEDIGPSESADTTTEKIIIVY-PIDQAPPLSITESTNGVQQKQQIP 364
           PT+ +GP + A+  +E++   + P D      IT+  N   + Q++P
Sbjct: 470 PTKGLGPRQCAELASERVFRYHGPTDYTKAQPITQILNASFKDQRLP 516


>SB_14830| Best HMM Match : NADH5_C (HMM E-Value=1.1)
          Length = 175

 Score = 28.3 bits (60), Expect = 3.2
 Identities = 18/53 (33%), Positives = 24/53 (45%)
 Frame = +3

Query: 96  LLYHFLREEYLNHLSLFHQCHHLTMNKKQLYESRIRHVYHQHQNPQKTLVLVN 254
           + YHF    Y +H   FH  HHL     Q Y    RH  + HQ    ++V+ N
Sbjct: 93  IYYHFHHYHYNHHHHHFHLHHHL---HYQNYIHPYRHRLNTHQALIWSVVIFN 142


>SB_29909| Best HMM Match : Tymo_45kd_70kd (HMM E-Value=1.8)
          Length = 441

 Score = 28.3 bits (60), Expect = 3.2
 Identities = 17/57 (29%), Positives = 20/57 (35%)
 Frame = +2

Query: 68  NANSRNYSRXXXXXXXXXXXXXXXXXXXXXXPDDEQETIIRISYPPRLPPTSKPTED 238
           N +S N SR                      P DE E +   +YPP LP    P ED
Sbjct: 295 NPDSPNSSRRQSDMRTKHSSTGSPLPRTPSPPTDEDEELDMANYPPPLPLEVIPLED 351


>SB_21866| Best HMM Match : UCH (HMM E-Value=0)
          Length = 2165

 Score = 28.3 bits (60), Expect = 3.2
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = +2

Query: 200 PPRLPPTSKPTEDIGPSESADTTTEKI 280
           PP   P S+PT+   P+ S  T TE++
Sbjct: 17  PPATTPPSQPTQPATPASSEPTNTEQL 43


>SB_15908| Best HMM Match : LysR_substrate (HMM E-Value=8.5e-40)
          Length = 296

 Score = 28.3 bits (60), Expect = 3.2
 Identities = 15/58 (25%), Positives = 28/58 (48%), Gaps = 2/58 (3%)
 Frame = +3

Query: 72  LIQEIIPDLLYHFLREEYLNHLSLFHQCHH--LTMNKKQLYESRIRHVYHQHQNPQKT 239
           +   ++P LL  F+      H+S F       L M + Q  +  I H++H+ ++P K+
Sbjct: 108 IASRVLPGLLQEFVSGAPNLHISFFDDNSDAVLKMVETQKVDFGIAHLFHEEEHPDKS 165


>SB_54589| Best HMM Match : Extensin_2 (HMM E-Value=0.0081)
          Length = 667

 Score = 27.9 bits (59), Expect = 4.2
 Identities = 14/41 (34%), Positives = 20/41 (48%), Gaps = 1/41 (2%)
 Frame = +2

Query: 200 PPRLPPT-SKPTEDIGPSESADTTTEKIIIVYPIDQAPPLS 319
           PP LPP    PT+ I   E  D   + +  ++    +PPLS
Sbjct: 567 PPTLPPIPGSPTKSIQSREGGDKELKPLRGLFTTGSSPPLS 607


>SB_47680| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2749

 Score = 27.9 bits (59), Expect = 4.2
 Identities = 24/84 (28%), Positives = 36/84 (42%), Gaps = 7/84 (8%)
 Frame = +2

Query: 200  PPRLPPTSKPTE--DIGPS-----ESADTTTEKIIIVYPIDQAPPLSITESTNGVQQKQQ 358
            PP +PP SKPT+  ++ P+     +S DT  EK     P    P   +  +      K  
Sbjct: 1273 PPPVPPPSKPTDKSNLRPAYKKLVDSQDTAIEKASPSLPAPPRPQQDLKPTGKIAPMKAP 1332

Query: 359  IPMYNSIPASQSSGFQSINRPXAP 430
             P  +  P S +S   S+N   +P
Sbjct: 1333 TPEIDE-PVSDNSSV-SLNARDSP 1354


>SB_52576| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1649

 Score = 27.5 bits (58), Expect = 5.6
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = +3

Query: 156  HHLTMNKKQLYESRIRHVYHQHQNPQKTLVLV 251
            HH T+ +  L   RI+H+Y  H N   TL ++
Sbjct: 1557 HHFTLKQWDLGSGRIKHIY-PHSNEITTLCVL 1587


>SB_33411| Best HMM Match : 7tm_1 (HMM E-Value=0.03)
          Length = 1020

 Score = 27.5 bits (58), Expect = 5.6
 Identities = 14/36 (38%), Positives = 19/36 (52%)
 Frame = +3

Query: 120 EYLNHLSLFHQCHHLTMNKKQLYESRIRHVYHQHQN 227
           EY   ++L HQ H  T   K  Y    R V+H+H+N
Sbjct: 453 EYPGIINLVHQRHRNTRTSK--YPGTSRLVHHRHRN 486


>SB_6365| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1017

 Score = 27.5 bits (58), Expect = 5.6
 Identities = 18/47 (38%), Positives = 22/47 (46%), Gaps = 2/47 (4%)
 Frame = +2

Query: 200 PPRLPPTS--KPTEDIGPSESADTTTEKIIIVYPIDQAPPLSITEST 334
           P   PPT+  +PT D   S SA TTT       P   APP +   +T
Sbjct: 787 PTTAPPTTTKEPTTDASTSTSAATTTAPATTT-PPTTAPPTTAPPTT 832


>SB_31590| Best HMM Match : His_leader (HMM E-Value=3.2)
          Length = 104

 Score = 27.5 bits (58), Expect = 5.6
 Identities = 12/43 (27%), Positives = 21/43 (48%)
 Frame = +3

Query: 102 YHFLREEYLNHLSLFHQCHHLTMNKKQLYESRIRHVYHQHQNP 230
           +H  R  Y +H++     HH+TM     + +RI   +H  + P
Sbjct: 6   HHMTRIAYNHHMTRIPYNHHMTMIPYDHHITRIPFYHHMTRTP 48


>SB_52135| Best HMM Match : RCSD (HMM E-Value=4.8)
          Length = 476

 Score = 27.1 bits (57), Expect = 7.4
 Identities = 22/84 (26%), Positives = 37/84 (44%)
 Frame = +2

Query: 200 PPRLPPTSKPTEDIGPSESADTTTEKIIIVYPIDQAPPLSITESTNGVQQKQQIPMYNSI 379
           PP  P T KP + + P+ S+  +TEK I        PP+S  + +  + +K+   + +  
Sbjct: 15  PP--PTTEKPHQGLEPTTSSSASTEKPI---KAKTPPPVSKKQPSPKLSEKRISSLGSLK 69

Query: 380 PASQSSGFQSINRPXAPERKITPA 451
            A  +   Q       P +  TPA
Sbjct: 70  SAKINHESQDGENIDGPHKTETPA 93


>SB_45068| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 171

 Score = 27.1 bits (57), Expect = 7.4
 Identities = 9/21 (42%), Positives = 12/21 (57%)
 Frame = +1

Query: 304 SPTIINNGIHEWCSTKTTNSN 366
           SP ++ +G HEW S     SN
Sbjct: 29  SPVVVTSGCHEWLSRVVVTSN 49


>SB_32254| Best HMM Match : zf-TRAF (HMM E-Value=2.5)
          Length = 364

 Score = 27.1 bits (57), Expect = 7.4
 Identities = 12/44 (27%), Positives = 20/44 (45%)
 Frame = +2

Query: 224 KPTEDIGPSESADTTTEKIIIVYPIDQAPPLSITESTNGVQQKQ 355
           K T+D+  + + DT+     +   +D+ PP  I  S      KQ
Sbjct: 47  KDTDDVEDASAVDTSVPPTDVTEAVDERPPREIILSVEPFHPKQ 90


>SB_53444| Best HMM Match : DUF40 (HMM E-Value=6.7)
          Length = 206

 Score = 27.1 bits (57), Expect = 7.4
 Identities = 13/51 (25%), Positives = 21/51 (41%)
 Frame = +3

Query: 195 RIRHVYHQHQNPQKTLVLVNQQTQXXXXXXXXXXXXXXHHYQ*RNPRMVFN 347
           R  H YH H +P   ++++ Q T               HH+   +P +V N
Sbjct: 111 RQHHHYHHHHSPAIIIIIIYQHT-----SSSFTGNRREHHHHHHSPAIVVN 156


>SB_24871| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 143

 Score = 27.1 bits (57), Expect = 7.4
 Identities = 12/44 (27%), Positives = 20/44 (45%)
 Frame = +2

Query: 224 KPTEDIGPSESADTTTEKIIIVYPIDQAPPLSITESTNGVQQKQ 355
           K T+D+  + + DT+     +   +D+ PP  I  S      KQ
Sbjct: 47  KDTDDVEDASAVDTSVPPTDVTEAVDERPPREIILSVEPFHPKQ 90


>SB_21529| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 367

 Score = 26.6 bits (56), Expect = 9.7
 Identities = 15/41 (36%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
 Frame = +3

Query: 147 HQCHHLTMNKKQ-LYESRIRHVYHQHQNPQKTLVLVNQQTQ 266
           HQ H L  +++Q  Y+ + +H  HQHQ+ Q+      QQ Q
Sbjct: 291 HQQHQLHQHQQQHQYQQQHQH-QHQHQHQQQQQQQQQQQQQ 330


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,144,999
Number of Sequences: 59808
Number of extensions: 235958
Number of successful extensions: 818
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 691
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 810
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 920703675
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)