Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0001_I24
(455 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z98866-26|CAM33505.1| 559|Caenorhabditis elegans Hypothetical p... 30 0.92
AC025724-1|AAG23375.2| 4177|Caenorhabditis elegans Enhancer of e... 29 2.1
AC006633-4|AAK68376.3| 1128|Caenorhabditis elegans Prion-like-(q... 28 2.8
U41019-3|AAA82329.3| 531|Caenorhabditis elegans Sop-2 related (... 28 3.7
Z49207-3|CAA89071.1| 927|Caenorhabditis elegans Hypothetical pr... 27 4.9
Z81058-7|CAB02920.1| 1011|Caenorhabditis elegans Hypothetical pr... 27 8.6
Z77661-11|CAB01190.2| 1099|Caenorhabditis elegans Hypothetical p... 27 8.6
Z68132-2|CAA92220.2| 762|Caenorhabditis elegans Hypothetical pr... 27 8.6
U00045-3|AAL02502.1| 868|Caenorhabditis elegans Temporarily ass... 27 8.6
U00045-2|AAL02501.1| 1004|Caenorhabditis elegans Temporarily ass... 27 8.6
U00045-1|AAM29684.1| 1099|Caenorhabditis elegans Temporarily ass... 27 8.6
U00025-4|AAN65312.1| 606|Caenorhabditis elegans Hypothetical pr... 27 8.6
U00025-3|AAA50619.1| 804|Caenorhabditis elegans Hypothetical pr... 27 8.6
AC006743-1|AAF60503.1| 255|Caenorhabditis elegans Hypothetical ... 27 8.6
AB110824-1|BAD80739.1| 606|Caenorhabditis elegans chondroitin p... 27 8.6
AB110823-1|BAD80738.1| 804|Caenorhabditis elegans chondroitin p... 27 8.6
>Z98866-26|CAM33505.1| 559|Caenorhabditis elegans Hypothetical
protein Y49E10.29 protein.
Length = 559
Score = 29.9 bits (64), Expect = 0.92
Identities = 17/70 (24%), Positives = 28/70 (40%), Gaps = 4/70 (5%)
Frame = +2
Query: 200 PPRLPPTSKPTEDIGPSESADTTTEKIIIVY----PIDQAPPLSITESTNGVQQKQQIPM 367
PP+ P P P + A + ++ P+ QAPP + V+Q +P
Sbjct: 326 PPKPAPQQAPPVQQNPPKPAVQQAQAPVVQQAPAPPVQQAPPKPTPQQAPPVRQNPPMPA 385
Query: 368 YNSIPASQSS 397
P+SQ +
Sbjct: 386 VQQAPSSQQA 395
>AC025724-1|AAG23375.2| 4177|Caenorhabditis elegans Enhancer of
efl-1 mutant phenotypeprotein 1 protein.
Length = 4177
Score = 28.7 bits (61), Expect = 2.1
Identities = 14/50 (28%), Positives = 22/50 (44%)
Frame = +3
Query: 72 LIQEIIPDLLYHFLREEYLNHLSLFHQCHHLTMNKKQLYESRIRHVYHQH 221
L++ +P+ L H L SLFHQ HL N + + + +H
Sbjct: 602 LMEGDLPEALMHILSNAEYYSPSLFHQSAHLITNFVYQFPEELSSIQRRH 651
>AC006633-4|AAK68376.3| 1128|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 34,
isoform a protein.
Length = 1128
Score = 28.3 bits (60), Expect = 2.8
Identities = 19/63 (30%), Positives = 32/63 (50%), Gaps = 2/63 (3%)
Frame = +2
Query: 212 PPTSKPTEDIGPSESADTTTEKIIIVYPIDQAPPLSITES-TN-GVQQKQQIPMYNSIPA 385
PP P + + P+++A K + PPL I + TN G+ KQ++P SIP+
Sbjct: 698 PPQQPPQQMLPPNQNAFHLHSKSDDATQVQADPPLEINRNLTNWGMTYKQEMPA-RSIPS 756
Query: 386 SQS 394
++
Sbjct: 757 RRT 759
>U41019-3|AAA82329.3| 531|Caenorhabditis elegans Sop-2 related
(ectopic expressionof hox genes) protein 3 protein.
Length = 531
Score = 27.9 bits (59), Expect = 3.7
Identities = 18/56 (32%), Positives = 22/56 (39%), Gaps = 4/56 (7%)
Frame = +3
Query: 108 FLREEYLNHLSLFHQ----CHHLTMNKKQLYESRIRHVYHQHQNPQKTLVLVNQQT 263
FL EY N H CH + K + E R Y++H N LV Q T
Sbjct: 196 FLLVEYQNFKRWIHMLSPYCHEIGWGKNEKQEYLKRGPYNRHMNVDLVAGLVKQST 251
>Z49207-3|CAA89071.1| 927|Caenorhabditis elegans Hypothetical
protein R07E3.6 protein.
Length = 927
Score = 27.5 bits (58), Expect = 4.9
Identities = 21/62 (33%), Positives = 32/62 (51%), Gaps = 2/62 (3%)
Frame = +2
Query: 170 EQETIIRISYPPRLPPTSKPTE--DIGPSESADTTTEKIIIVYPIDQAPPLSITESTNGV 343
E+E +I+ + ++ PTS TE +E A TTTE+I +AP + T+ST
Sbjct: 302 EKEVVIKTT---KVTPTSTTTEIPTTTTTEEATTTTEEITTT--TTKAPTTTTTQSTTTT 356
Query: 344 QQ 349
Q
Sbjct: 357 TQ 358
>Z81058-7|CAB02920.1| 1011|Caenorhabditis elegans Hypothetical
protein F11E6.7 protein.
Length = 1011
Score = 26.6 bits (56), Expect = 8.6
Identities = 23/84 (27%), Positives = 40/84 (47%), Gaps = 7/84 (8%)
Frame = +2
Query: 167 DEQETIIRISYPPRLP---PTSKPTEDIGPSESADTTTE-KIIIVYPIDQAPPLSIT--- 325
+E+ + + PP + P+SK ++ + P E+ D + +I + +A P+S T
Sbjct: 742 EEKPMDVADAIPPEIEAVSPSSKDSQSV-PMETKDNSPPANEVIAQELPKASPISNTPSV 800
Query: 326 ESTNGVQQKQQIPMYNSIPASQSS 397
EST Q+ P + PAS S
Sbjct: 801 ESTQPALNVQKTPEASQSPASPIS 824
>Z77661-11|CAB01190.2| 1099|Caenorhabditis elegans Hypothetical
protein F40G12.3 protein.
Length = 1099
Score = 26.6 bits (56), Expect = 8.6
Identities = 18/48 (37%), Positives = 21/48 (43%), Gaps = 2/48 (4%)
Frame = +2
Query: 212 PPTSKPTEDIGPSESADTTT--EKIIIVYPIDQAPPLSITESTNGVQQ 349
P KPT D+ S S D+TT D +P TEST V Q
Sbjct: 337 PNPGKPTPDVTYSSSTDSTTAITSHSTSELHDYSPTFKSTESTTSVTQ 384
>Z68132-2|CAA92220.2| 762|Caenorhabditis elegans Hypothetical
protein F09C8.2 protein.
Length = 762
Score = 26.6 bits (56), Expect = 8.6
Identities = 13/45 (28%), Positives = 18/45 (40%)
Frame = +3
Query: 99 LYHFLREEYLNHLSLFHQCHHLTMNKKQLYESRIRHVYHQHQNPQ 233
LY L L + FH H ++Q + +H H Q PQ
Sbjct: 119 LYQALNMSPLPPTATFHALHQQQQQQQQHQSMKQQHAMHLQQQPQ 163
>U00045-3|AAL02502.1| 868|Caenorhabditis elegans Temporarily
assigned gene nameprotein 204, isoform b protein.
Length = 868
Score = 26.6 bits (56), Expect = 8.6
Identities = 15/64 (23%), Positives = 33/64 (51%), Gaps = 2/64 (3%)
Frame = +2
Query: 230 TEDIGPSESADTTTEKII--IVYPIDQAPPLSITESTNGVQQKQQIPMYNSIPASQSSGF 403
T+ + P+ +T +I + P D++P + NG Q++++ Y++ AS+ G
Sbjct: 311 TQILAPAPKKPNSTTRIYHAVDIPFDESPASYYPKQNNGYQRQRR---YSASSASKQDGM 367
Query: 404 QSIN 415
++N
Sbjct: 368 FTLN 371
>U00045-2|AAL02501.1| 1004|Caenorhabditis elegans Temporarily
assigned gene nameprotein 204, isoform a protein.
Length = 1004
Score = 26.6 bits (56), Expect = 8.6
Identities = 15/64 (23%), Positives = 33/64 (51%), Gaps = 2/64 (3%)
Frame = +2
Query: 230 TEDIGPSESADTTTEKII--IVYPIDQAPPLSITESTNGVQQKQQIPMYNSIPASQSSGF 403
T+ + P+ +T +I + P D++P + NG Q++++ Y++ AS+ G
Sbjct: 266 TQILAPAPKKPNSTTRIYHAVDIPFDESPASYYPKQNNGYQRQRR---YSASSASKQDGM 322
Query: 404 QSIN 415
++N
Sbjct: 323 FTLN 326
>U00045-1|AAM29684.1| 1099|Caenorhabditis elegans Temporarily
assigned gene nameprotein 204, isoform c protein.
Length = 1099
Score = 26.6 bits (56), Expect = 8.6
Identities = 15/64 (23%), Positives = 33/64 (51%), Gaps = 2/64 (3%)
Frame = +2
Query: 230 TEDIGPSESADTTTEKII--IVYPIDQAPPLSITESTNGVQQKQQIPMYNSIPASQSSGF 403
T+ + P+ +T +I + P D++P + NG Q++++ Y++ AS+ G
Sbjct: 361 TQILAPAPKKPNSTTRIYHAVDIPFDESPASYYPKQNNGYQRQRR---YSASSASKQDGM 417
Query: 404 QSIN 415
++N
Sbjct: 418 FTLN 421
>U00025-4|AAN65312.1| 606|Caenorhabditis elegans Hypothetical
protein PAR2.4b protein.
Length = 606
Score = 26.6 bits (56), Expect = 8.6
Identities = 11/21 (52%), Positives = 15/21 (71%)
Frame = +2
Query: 167 DEQETIIRISYPPRLPPTSKP 229
+ +ET IS+PP LPP +KP
Sbjct: 157 EARETGEAISWPPALPPYAKP 177
>U00025-3|AAA50619.1| 804|Caenorhabditis elegans Hypothetical
protein PAR2.4a protein.
Length = 804
Score = 26.6 bits (56), Expect = 8.6
Identities = 11/21 (52%), Positives = 15/21 (71%)
Frame = +2
Query: 167 DEQETIIRISYPPRLPPTSKP 229
+ +ET IS+PP LPP +KP
Sbjct: 355 EARETGEAISWPPALPPYAKP 375
>AC006743-1|AAF60503.1| 255|Caenorhabditis elegans Hypothetical
protein Y38C1BA.1 protein.
Length = 255
Score = 26.6 bits (56), Expect = 8.6
Identities = 8/21 (38%), Positives = 15/21 (71%)
Frame = -1
Query: 377 LNYTLEFVVFVEHHSWIPLLI 315
+ YT++F+++V W P+LI
Sbjct: 88 ITYTIDFLIWVPKEFWCPMLI 108
>AB110824-1|BAD80739.1| 606|Caenorhabditis elegans chondroitin
polymerizing factor-S protein.
Length = 606
Score = 26.6 bits (56), Expect = 8.6
Identities = 11/21 (52%), Positives = 15/21 (71%)
Frame = +2
Query: 167 DEQETIIRISYPPRLPPTSKP 229
+ +ET IS+PP LPP +KP
Sbjct: 157 EARETGEAISWPPALPPYAKP 177
>AB110823-1|BAD80738.1| 804|Caenorhabditis elegans chondroitin
polymerizing factor protein.
Length = 804
Score = 26.6 bits (56), Expect = 8.6
Identities = 11/21 (52%), Positives = 15/21 (71%)
Frame = +2
Query: 167 DEQETIIRISYPPRLPPTSKP 229
+ +ET IS+PP LPP +KP
Sbjct: 355 EARETGEAISWPPALPPYAKP 375
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,350,774
Number of Sequences: 27780
Number of extensions: 180124
Number of successful extensions: 785
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 726
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 785
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 809909048
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -