Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_I24
         (455 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    24   0.68 
AY739659-1|AAU85298.1|  288|Apis mellifera hyperpolarization-act...    24   0.90 
AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein ...    22   3.6  
AB208106-1|BAE72138.1|  111|Apis mellifera Broad complex zinc fi...    22   3.6  
M12598-1|AAA27733.1|   77|Apis mellifera protein ( Bee preprosec...    21   6.3  
AY082691-1|AAL92482.1|   77|Apis mellifera preprosecapin protein.      21   6.3  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       21   8.4  

>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 24.2 bits (50), Expect = 0.68
 Identities = 14/44 (31%), Positives = 19/44 (43%)
 Frame = +2

Query: 200 PPRLPPTSKPTEDIGPSESADTTTEKIIIVYPIDQAPPLSITES 331
           P     +S PT       S D   E + ++  + QAPPL  T S
Sbjct: 592 PASSSASSAPTSVCSSPRSEDKEVEDMPVLKRVLQAPPLYDTNS 635


>AY739659-1|AAU85298.1|  288|Apis mellifera
           hyperpolarization-activated ion channelvariant T
           protein.
          Length = 288

 Score = 23.8 bits (49), Expect = 0.90
 Identities = 13/27 (48%), Positives = 15/27 (55%)
 Frame = +2

Query: 188 RISYPPRLPPTSKPTEDIGPSESADTT 268
           R + PP+   TSK    IG SE  DTT
Sbjct: 249 RRATPPQPDRTSKDQGTIGESEVFDTT 275


>AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein
           protein.
          Length = 352

 Score = 21.8 bits (44), Expect = 3.6
 Identities = 10/18 (55%), Positives = 10/18 (55%)
 Frame = +3

Query: 213 HQHQNPQKTLVLVNQQTQ 266
           HQHQ      V V QQTQ
Sbjct: 22  HQHQQHYGAAVQVPQQTQ 39


>AB208106-1|BAE72138.1|  111|Apis mellifera Broad complex zinc
           finger domain-Z1 isoform protein.
          Length = 111

 Score = 21.8 bits (44), Expect = 3.6
 Identities = 13/46 (28%), Positives = 20/46 (43%)
 Frame = +3

Query: 129 NHLSLFHQCHHLTMNKKQLYESRIRHVYHQHQNPQKTLVLVNQQTQ 266
           NH S++H+ H  + N++Q  E        + Q      V   QQ Q
Sbjct: 50  NHKSIYHRQH--SKNEQQRKEMEQMREREREQREHSDRVTSQQQQQ 93


>M12598-1|AAA27733.1|   77|Apis mellifera protein ( Bee
           preprosecapin mRNA, complete cds. ).
          Length = 77

 Score = 21.0 bits (42), Expect = 6.3
 Identities = 8/12 (66%), Positives = 8/12 (66%)
 Frame = +2

Query: 191 ISYPPRLPPTSK 226
           I  PPR PP SK
Sbjct: 55  IDVPPRCPPGSK 66


>AY082691-1|AAL92482.1|   77|Apis mellifera preprosecapin protein.
          Length = 77

 Score = 21.0 bits (42), Expect = 6.3
 Identities = 8/12 (66%), Positives = 8/12 (66%)
 Frame = +2

Query: 191 ISYPPRLPPTSK 226
           I  PPR PP SK
Sbjct: 55  IDVPPRCPPGSK 66


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 20.6 bits (41), Expect = 8.4
 Identities = 11/44 (25%), Positives = 20/44 (45%)
 Frame = +2

Query: 290 YPIDQAPPLSITESTNGVQQKQQIPMYNSIPASQSSGFQSINRP 421
           Y + Q   L     ++G+Q  + +PM+ S  +      Q+ N P
Sbjct: 197 YLLQQGLGLQGHNPSSGLQPGEGLPMWKSDTSDGPESHQNSNVP 240


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 121,201
Number of Sequences: 438
Number of extensions: 2442
Number of successful extensions: 9
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 12066642
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)