Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0001_I23
(437 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC336.01 |fbh1|fdh1, fdh|DNA helicase I|Schizosaccharomyces po... 33 0.015
SPAC3G9.01 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||... 33 0.025
SPBC577.13 |syj2||inositol-polyphosphate 5-phosphatase |Schizosa... 27 1.7
SPAPYUG7.03c |mid2||anillin homologue Mid2|Schizosaccharomyces p... 26 2.2
SPAC1565.08 |cdc48|SPAC6F12.01|AAA family ATPase Cdc48|Schizosac... 26 2.2
SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual 26 2.9
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 26 2.9
SPBP35G2.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr... 26 2.9
SPBC577.15c |||NASP family histone binding protein|Schizosacchar... 25 3.9
SPAC694.06c |mrc1||mediator of replication checkpoint 1 |Schizos... 25 3.9
SPAC3H1.12c |snt2||Lid2 complex subunit Snt2 |Schizosaccharomyce... 25 6.7
SPAC688.08 |srb8|med12|mediator complex subunit Srb8 |Schizosacc... 25 6.7
SPCC330.11 |btb1||BTB/POZ domain protein Btb1|Schizosaccharomyce... 25 6.7
SPBC19F8.02 |||nuclear distribution protein NUDC |Schizosaccharo... 24 8.9
SPBC28F2.06c |mdm12||Mdm10/Mdm12/Mmm1 complex subunit Mdm12|Schi... 24 8.9
>SPBC336.01 |fbh1|fdh1, fdh|DNA helicase I|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 878
Score = 33.5 bits (73), Expect = 0.015
Identities = 29/117 (24%), Positives = 49/117 (41%), Gaps = 2/117 (1%)
Frame = +2
Query: 53 QCDKN-NNFVEVKAKYGKGKTSSISVDSSFAPHDSTLQIKANSPSAEKFK-KLELNIRSK 226
+C N ++VKA G GKT ++ + P D L + N + E + + N++
Sbjct: 282 ECQLNPGEVLKVKAFAGTGKTKALLEFAKSRPKDKILYVAFNKAAKEDAELRFPFNVKCS 341
Query: 227 NPSPDTYSNSIIMDADGRVYKSESTIVLSKAHPVLDLQYVNPETNKPSRIYVKGSSL 397
Y +I+ AD K E + S +L LQ P+ N+ + +SL
Sbjct: 342 TMHGLAY-GAILAQADLPQAKLERQLSNSTIASLLSLQVAFPKANRKNNPGTPSASL 397
>SPAC3G9.01 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 462
Score = 32.7 bits (71), Expect = 0.025
Identities = 29/102 (28%), Positives = 47/102 (46%), Gaps = 6/102 (5%)
Frame = +2
Query: 41 KRDSQCDKNNNFVEVKAKYGKGKTSSISVDSSFAP----HDSTLQI--KANSPSAEKFKK 202
K D++ D + V+ G+GKTS+ S ++ P D+ + K EK+ K
Sbjct: 125 KLDNEIDNYKHDVKYSPYKGQGKTSNPSQGTTKCPGIFEEDNFFSVSPKRRKNLFEKYGK 184
Query: 203 LELNIRSKNPSPDTYSNSIIMDADGRVYKSESTIVLSKAHPV 328
+L ++ PSP +S I RV T +LSK+ P+
Sbjct: 185 TDLGKPARVPSPKKSLSSTIKSPPSRV--KLPTSILSKSPPL 224
>SPBC577.13 |syj2||inositol-polyphosphate 5-phosphatase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 889
Score = 26.6 bits (56), Expect = 1.7
Identities = 13/47 (27%), Positives = 21/47 (44%)
Frame = +2
Query: 107 KTSSISVDSSFAPHDSTLQIKANSPSAEKFKKLELNIRSKNPSPDTY 247
+ S V+ F+ ST PS ++FK+L L + + D Y
Sbjct: 558 RRSEYRVERDFSIFSSTFNANGKVPSTDEFKRLLLPFGERTSAYDLY 604
>SPAPYUG7.03c |mid2||anillin homologue Mid2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 704
Score = 26.2 bits (55), Expect = 2.2
Identities = 18/59 (30%), Positives = 27/59 (45%)
Frame = +2
Query: 107 KTSSISVDSSFAPHDSTLQIKANSPSAEKFKKLELNIRSKNPSPDTYSNSIIMDADGRV 283
K + SV +S ++ TL + S KLEL S N S +++NSI+ V
Sbjct: 176 KNPARSVCNSKLFNEDTLPAEFEEVSISPPVKLELPTHSHNSSDTSFTNSIVSSVSDMV 234
>SPAC1565.08 |cdc48|SPAC6F12.01|AAA family ATPase
Cdc48|Schizosaccharomyces pombe|chr 1|||Manual
Length = 815
Score = 26.2 bits (55), Expect = 2.2
Identities = 16/50 (32%), Positives = 27/50 (54%), Gaps = 1/50 (2%)
Frame = +2
Query: 173 NSPSAEKFKKLEL-NIRSKNPSPDTYSNSIIMDADGRVYKSESTIVLSKA 319
N+PS KK E+ +++ +NP DTYS A R + +++V+ A
Sbjct: 2 NAPSTMTDKKPEVEHLQGENPPKDTYSAEDTATAILRKKRKPNSLVVDDA 51
>SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual
Length = 4717
Score = 25.8 bits (54), Expect = 2.9
Identities = 14/41 (34%), Positives = 23/41 (56%)
Frame = +2
Query: 185 AEKFKKLELNIRSKNPSPDTYSNSIIMDADGRVYKSESTIV 307
A +FKK ++ +R PS TY I +D + +S ST++
Sbjct: 4484 ASQFKKDKIWMRRVKPSKRTYQVMISIDDSKSMSESGSTVL 4524
>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 534
Score = 25.8 bits (54), Expect = 2.9
Identities = 24/98 (24%), Positives = 41/98 (41%)
Frame = +2
Query: 110 TSSISVDSSFAPHDSTLQIKANSPSAEKFKKLELNIRSKNPSPDTYSNSIIMDADGRVYK 289
+SS S SSF+ S+ + ++S + I S + SP + S S +
Sbjct: 308 SSSSSSSSSFSSTLSSSSMSSSSSFSSSPTSSSSTISSSSSSPSSSSFSSTTSSSKSSSS 367
Query: 290 SESTIVLSKAHPVLDLQYVNPETNKPSRIYVKGSSLSS 403
ST+ S + L + +++P+ SSLSS
Sbjct: 368 FSSTVSSSSSTSSSTLTSSSSSSSRPASSSSHSSSLSS 405
>SPBP35G2.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 1060
Score = 25.8 bits (54), Expect = 2.9
Identities = 21/87 (24%), Positives = 39/87 (44%), Gaps = 1/87 (1%)
Frame = +2
Query: 62 KNNNFVEVKAKYGKGKTSSISVDSSFAP-HDSTLQIKANSPSAEKFKKLELNIRSKNPSP 238
+NN+ + V + +G+TSS+S SS+ P ++ + S + L L+ S
Sbjct: 130 QNNSNLSVTSSANRGRTSSVS--SSYDPSFPWGPRMSSVSSGKQHLSSLSLHTHFNPSSS 187
Query: 239 DTYSNSIIMDADGRVYKSESTIVLSKA 319
T S+ + + + S ST + A
Sbjct: 188 STVSSDSLESSQQKAPSSSSTATPASA 214
>SPBC577.15c |||NASP family histone binding
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 396
Score = 25.4 bits (53), Expect = 3.9
Identities = 15/52 (28%), Positives = 27/52 (51%), Gaps = 2/52 (3%)
Frame = +2
Query: 206 ELNIRSKNPSPDTYSNSIIMDADGRVYKSESTIVLSKAH--PVLDLQYVNPE 355
EL++ +N S + ++ +VY + +LS+AH L L++ NPE
Sbjct: 207 ELSLEIENFSQASQDLKTALEWKEKVYNVSNNTLLSEAHYKLALALEFTNPE 258
>SPAC694.06c |mrc1||mediator of replication checkpoint 1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1019
Score = 25.4 bits (53), Expect = 3.9
Identities = 17/59 (28%), Positives = 30/59 (50%)
Frame = +2
Query: 233 SPDTYSNSIIMDADGRVYKSESTIVLSKAHPVLDLQYVNPETNKPSRIYVKGSSLSSTQ 409
S D + +I D+ R+ SES K + D +N E ++ + +YV+ S S++Q
Sbjct: 548 SDDESNGDMIRDSFDRL-SSESIKDSQKTEELHDSFGINDEVDQSTSLYVQNSQPSASQ 605
>SPAC3H1.12c |snt2||Lid2 complex subunit Snt2 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1131
Score = 24.6 bits (51), Expect = 6.7
Identities = 12/45 (26%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
Frame = +2
Query: 47 DSQCDKNNNFVEVKAKYGKG-KTSSISVDSSFAPHDSTLQIKANS 178
D++ K NN + + + + S+ + D+ HDST+ +KA++
Sbjct: 746 DNEVKKENNRIRNASSLMENPRVSTKTFDNFTLTHDSTINVKADT 790
>SPAC688.08 |srb8|med12|mediator complex subunit Srb8
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1233
Score = 24.6 bits (51), Expect = 6.7
Identities = 12/35 (34%), Positives = 23/35 (65%), Gaps = 1/35 (2%)
Frame = -2
Query: 127 NGNRTCLTLAVF-RFNFHKVIILITLAISFVVKIH 26
+G+R + ++F NF + +I + L +SFV+K+H
Sbjct: 436 SGDRNFIVSSIFDNANFDRNLI-VDLTLSFVLKLH 469
>SPCC330.11 |btb1||BTB/POZ domain protein Btb1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1347
Score = 24.6 bits (51), Expect = 6.7
Identities = 20/65 (30%), Positives = 35/65 (53%), Gaps = 1/65 (1%)
Frame = +2
Query: 221 SKNPSPDTYSNSIIMDADG-RVYKSESTIVLSKAHPVLDLQYVNPETNKPSRIYVKGSSL 397
SK+PS + + I D +G ++ S ++ S HPVLDL + E +Y G+++
Sbjct: 108 SKDPS---FRSLRIKDKEGLSPFQFLSRVLSSTIHPVLDLPIIGNE------LYGFGTNV 158
Query: 398 SSTQG 412
++T G
Sbjct: 159 NNTLG 163
>SPBC19F8.02 |||nuclear distribution protein NUDC
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 166
Score = 24.2 bits (50), Expect = 8.9
Identities = 24/99 (24%), Positives = 38/99 (38%), Gaps = 1/99 (1%)
Frame = +2
Query: 77 VEVKAKYGKG-KTSSISVDSSFAPHDSTLQIKANSPSAEKFKKLELNIRSKNPSPDTYSN 253
V++ KG + S+ VD S HD +QI LE I +
Sbjct: 20 VDIVIHVPKGTRAKSLQVDMS--NHDLKIQINVPERKVLLSGPLEKQINLDESTWTVEEQ 77
Query: 254 SIIMDADGRVYKSESTIVLSKAHPVLDLQYVNPETNKPS 370
++ + K E + K HP +D+ + PE +K S
Sbjct: 78 ERLVIHLEKSNKMEWWSCVIKGHPSIDIGSIEPENSKLS 116
>SPBC28F2.06c |mdm12||Mdm10/Mdm12/Mmm1 complex subunit
Mdm12|Schizosaccharomyces pombe|chr 2|||Manual
Length = 273
Score = 24.2 bits (50), Expect = 8.9
Identities = 11/39 (28%), Positives = 16/39 (41%)
Frame = +2
Query: 320 HPVLDLQYVNPETNKPSRIYVKGSSLSSTQGKIELKVDN 436
HP L Y NP N P + G + + + +DN
Sbjct: 101 HPFSRLAYFNPAFNSPGILSASGLTSPIPESRPSTPMDN 139
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,841,309
Number of Sequences: 5004
Number of extensions: 36456
Number of successful extensions: 127
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 125
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 126
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 158122380
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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